ClCG04G000060 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G000060
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Protein of unknown function (DUF1138)
Location	CG_Chr04: 192489 .. 194681 (+)
RNA-Seq Expression	ClCG04G000060
Synteny	ClCG04G000060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAGAAGAAGGCAAAGACGAAACGTCCGGGAAAAGGGAAAGGACAAGAGAGAAAGCGAAAGGTTCAGAGAGAGCGAACCTTCAGGGTGAAATCGAAAGGGTCGGAGAGAAAGCGAAAGCAAAAGCGACAAGATTGGAAGAGGGAAAATTGGGACGTTCAGTGAGAAAGCGGGAAATTTTGAGAGAGAAAGCGAAAGGTTGTGAGAGAAAGCGAAAGCGGAAAAGCATTCCAACGGGTAGGAGGCGACTTTTAAAGAAAAAATGGGAAGGCGCGTTTTGAGTTGTTTTAAGTTCGGGAGGGTAAAATTGGTATTTCACGTGTCCAAACGGTCACTTATGATAAAGTTTTCGGGAGTGGGTCATCTATAGATAAGATTTTAGTTTTTGGGTCATTTCGTGCAATTTTCCGCATATCTCTCCTTCCCCTTCCAGCTTCTTCATTTTTTTCCATCTTTTTTTTTTTTTTTTTTTTTTTATTTTCTCGATAAGATTCATTTTTCTCCAATCTGAGCTTCATCGCTTAGAAAATCGGCTCTTCATTCTGTACATCTATTTTCATCGGTATGTCTTTGTCTCTATCTCTCTATCCCTGATTGTTAACTGCTGGTTGTTTCTTTCTCTCAATTCAAATGGAATCTCATGGTGGAGGCTGTTGAAATGGGTAGTATCAGTGGAAAATAGAGGGATATGTTCACATGAATTTGTTGTTGTTATGCCACCATAATTTCTATTCTAGTTTGGGATTCCCTCTAATTGACTAATAGGTTATTGTTATTATGTCACTCCCGTTGGTTACTGTTCGTGCTTGCTTAATGGGTAATTTTGCTTTTGACTTGTGGAAAGTTTGTAGGTTTGTAATGGGATTTGTTCTCTGTTTTTTGAATTTGTGATTGTTAGGCTGGATTTTGAATATTTAATGATTTATTCATGGTTGTTTCGGCTGTAACTGTAAATTTTGTTACTAAATTACTTGAGCAAAACAGTGGTCATCCCCATTCAACCCAATTCTATGGGGATGGGATCGGTTTGCTAATTTGGTGTTAATTAGTGCTGTTAACTCTTGATTTATGTTGCTCTATTCTGTTTTACTGTGCTTTGTCAATTTTCTTTTTTTCCTCCTTTCTTTGATGGACATGTATGCACTGTAAAGCTGCCTATATATTGCAGCCTCCTAGTCTGTTTTGGAATATATCAGAAAATACTCATTCGGCTTCTGCAGTCTTCTTCTTCTATCTGAATATTAGAATCCATGAAGTCTAGACGAGCATTCAGTCCAAAAAATAAAAATTGGGGTATGATCCAAGAATGGTGAACTCAGACACCATCTTGAAAGGCATGTTAGGGATCCCACATACCTCACAGTTTTTATAAGATAGAATGGCTACTCCTCTCTTTGTTATTAGTTTTGAGGTAGAACTCCGTATTATTTGATAATTGGGAAATTGATTACTTGCGGGCATTTTGGGTCTTGAATTGGCTTCAAATTGATTCTTCCCAAACCTATCCTTCATCCATCCTACATGCAAAATGAATCGTTCTTTTGGGTATATATTTCTAAGATTTTGGACACACTGATATGCCCATACACGAGACACACAAACACGTCAAAATTGTGCCGCATTTTGGGCCTCACGGCCTAAATCTGAATCCTTTGTAAAAGCGGAAAGAAAAAACCTCAAATCGTAGACTATGTTACTGTTATCAATGTTGGAACTTGACTGAGAGATTTTTAATTCGTTTGGAACTTGTTTATGGTTTCTTAAATGGTTCAATTGATTTGGGAACATACTACATACTAGTCTATTGCAGTTAGAAGATGGCAGCAAAATACATAGTAGGTTCTTTGTTTGGAGCAGTTGCAGTTGCGTATATTTCTGACCACCTTGTTGCTGACAAGAAAATATTTGGAGGTAATTAGCAGTCATCATTTGCTTTCGTAGTTTCTTTGATGTGCTAGCTAGTTGCTACCCTTACTTTGCTTTGCTGTTTCTTTGATGTGCTACCATTGTCAGTTTCTTTTTAATGGATTTTGTTTCAGGAACAACCCCAAGTACTGTTTCAAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCAGTGGTCATGAACCCCATCAGTCGCCAGAATTTCATAGTCAAAACCCTCTCTGAAGCTTAA

mRNA sequence

ATGAAGAAGAGAAGAAGGCAAAGACGAAACGTCCGGGAAAAGGGAAAGGACAAGAGAGAAAGCGAAAGGTTCAGAGAGAGCGAACCTTCAGGATTCATTTTTCTCCAATCTGAGCTTCATCGCTTAGAAAATCGGCTCTTCATTCTGTACATCTATTTTCATCGTCTATTGCAGTTAGAAGATGGCAGCAAAATACATATTGCGTATATTTCTGACCACCTTGTTGCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCAAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCAGTGGTCATGAACCCCATCAGTCGCCAGAATTTCATAGTCAAAACCCTCTCTGAAGCTTAA

Coding sequence (CDS)

ATGAAGAAGAGAAGAAGGCAAAGACGAAACGTCCGGGAAAAGGGAAAGGACAAGAGAGAAAGCGAAAGGTTCAGAGAGAGCGAACCTTCAGGATTCATTTTTCTCCAATCTGAGCTTCATCGCTTAGAAAATCGGCTCTTCATTCTGTACATCTATTTTCATCGTCTATTGCAGTTAGAAGATGGCAGCAAAATACATATTGCGTATATTTCTGACCACCTTGTTGCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCAAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCAGTGGTCATGAACCCCATCAGTCGCCAGAATTTCATAGTCAAAACCCTCTCTGAAGCTTAA

Protein sequence

MKKRRRQRRNVREKGKDKRESERFRESEPSGFIFLQSELHRLENRLFILYIYFHRLLQLEDGSKIHIAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTLSEA

Homology

[Close]

BLAST of ClCG04G000060 vs. NCBI nr
Match: XP_022966506.1 (uncharacterized protein LOC111466138 [Cucurbita maxima])

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-27
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 67  IAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 126
           IAYI+D+LV+DKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK
Sbjct: 16  IAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 75

Query: 127 TLSEA 132
           T SEA
Sbjct: 76  TRSEA 80

[Close]

BLAST of ClCG04G000060 vs. NCBI nr
Match: XP_038883759.1 (uncharacterized protein LOC120074644 [Benincasa hispida] >XP_038883760.1 uncharacterized protein LOC120074644 [Benincasa hispida])

HSP 1 Score: 132.5 bits (332), Expect = 2.7e-27
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 67  IAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 126
           +AYISDHL+ADKKIFGGTTPSTVSN EWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK
Sbjct: 16  LAYISDHLIADKKIFGGTTPSTVSNREWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 75

Query: 127 TLSEA 132
             SEA
Sbjct: 76  ARSEA 80

[Close]

BLAST of ClCG04G000060 vs. NCBI nr
Match: KAG6603220.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.1 bits (331), Expect = 3.5e-27
Identity = 68/95 (71.58%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 37  SELHRLENRLFILYIYFHRLLQLEDGSKIHIAYISDHLVADKKIFGGTTPSTVSNSEWWE 96
           SE+HRLENR+ +  +    ++    G+    AYIS  LVADKKIFGGTTP+TV NSEWWE
Sbjct: 94  SEVHRLENRINLTKMAAKYIVVSTLGA-FAFAYISHILVADKKIFGGTTPTTVLNSEWWE 153

Query: 97  ETDKKFQAWPRTAGPPVVMNPISRQNFIVKTLSEA 132
           ETDKKFQAWPRTAGPPVVMNPISRQNFIVKT SEA
Sbjct: 154 ETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRSEA 187

[Close]

BLAST of ClCG04G000060 vs. NCBI nr
Match: XP_023517179.1 (uncharacterized protein LOC111781016 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 7.7e-27
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 67  IAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 126
           IAYI+D+LV+DKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK
Sbjct: 16  IAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 75

Query: 127 TLSEA 132
           T  EA
Sbjct: 76  TRPEA 80

[Close]

BLAST of ClCG04G000060 vs. NCBI nr
Match: XP_022925267.1 (uncharacterized protein LOC111432556 [Cucurbita moschata] >KAG7027625.1 hypothetical protein SDJN02_11640 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.0 bits (328), Expect = 7.7e-27
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 67  IAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 126
           IAYI+D+LV+DKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK
Sbjct: 16  IAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 75

Query: 127 TLSEA 132
           T  EA
Sbjct: 76  TRPEA 80

[Close]

BLAST of ClCG04G000060 vs. ExPASy TrEMBL
Match: A0A6J1HPI7 (uncharacterized protein LOC111466138 OS=Cucurbita maxima OX=3661 GN=LOC111466138 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 9.8e-28
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 67  IAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 126
           IAYI+D+LV+DKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK
Sbjct: 16  IAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 75

Query: 127 TLSEA 132
           T SEA
Sbjct: 76  TRSEA 80

[Close]

BLAST of ClCG04G000060 vs. ExPASy TrEMBL
Match: A0A6J1EBA8 (uncharacterized protein LOC111432556 OS=Cucurbita moschata OX=3662 GN=LOC111432556 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.7e-27
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 67  IAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 126
           IAYI+D+LV+DKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK
Sbjct: 16  IAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 75

Query: 127 TLSEA 132
           T  EA
Sbjct: 76  TRPEA 80

[Close]

BLAST of ClCG04G000060 vs. ExPASy TrEMBL
Match: A0A6J1HS56 (uncharacterized protein LOC111467297 OS=Cucurbita maxima OX=3661 GN=LOC111467297 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-26
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 68  AYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKT 127
           AY+SD LVADKKIFGGTTPSTV NSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKT
Sbjct: 17  AYVSDILVADKKIFGGTTPSTVLNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKT 76

Query: 128 LSEA 132
            SEA
Sbjct: 77  RSEA 80

[Close]

BLAST of ClCG04G000060 vs. ExPASy TrEMBL
Match: A0A5A7UM13 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00430 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.2e-26
Identity = 56/61 (91.80%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 67  IAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 126
           +AYI DHL++DKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK
Sbjct: 16  VAYIGDHLISDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 75

Query: 127 T 128
           +
Sbjct: 76  S 76

[Close]

BLAST of ClCG04G000060 vs. ExPASy TrEMBL
Match: A0A1S3CSQ7 (uncharacterized protein LOC103504527 OS=Cucumis melo OX=3656 GN=LOC103504527 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.2e-26
Identity = 56/61 (91.80%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 67  IAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 126
           +AYI DHL++DKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK
Sbjct: 16  VAYIGDHLISDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 75

Query: 127 T 128
           +
Sbjct: 76  S 76

[Close]

BLAST of ClCG04G000060 vs. TAIR 10
Match: AT1G01170.1 (Protein of unknown function (DUF1138) )

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-25
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 67  IAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 126
           I+YI D +++D KIFGGTTP TVSN EWW  TD+KFQAWPRTAGPPVVMNPISRQNFIVK
Sbjct: 20  ISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPVVMNPISRQNFIVK 79

Query: 127 TLSE 131
           T  E
Sbjct: 80  TRPE 83

[Close]

BLAST of ClCG04G000060 vs. TAIR 10
Match: AT1G01170.2 (Protein of unknown function (DUF1138) )

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-25
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 67  IAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 126
           I+YI D +++D KIFGGTTP TVSN EWW  TD+KFQAWPRTAGPPVVMNPISRQNFIVK
Sbjct: 20  ISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPVVMNPISRQNFIVK 79

Query: 127 TLSE 131
           T  E
Sbjct: 80  TRPE 83

[Close]

BLAST of ClCG04G000060 vs. TAIR 10
Match: AT4G00860.1 (Protein of unknown function (DUF1138) )

HSP 1 Score: 97.4 bits (241), Expect = 8.8e-21
Identity = 40/64 (62.50%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 67  IAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK 126
           +AY+ D +++D K+FGGTTP T++N EW   T+++ QAWPR AGPPVVMNPISRQNFIVK
Sbjct: 17  VAYVCDKVISDDKLFGGTTPGTITNKEWGAATEERLQAWPRVAGPPVVMNPISRQNFIVK 76

Query: 127 TLSE 131
           +  E
Sbjct: 77  SRPE 80

The following BLAST results are available for this feature:

BLAST of ClCG04G000060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022966506.1	2.0e-27	93.85	uncharacterized protein LOC111466138 [Cucurbita maxima]	[more]
XP_038883759.1	2.7e-27	92.31	uncharacterized protein LOC120074644 [Benincasa hispida] >XP_038883760.1 unchara...	[more]
KAG6603220.1	3.5e-27	71.58	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023517179.1	7.7e-27	92.31	uncharacterized protein LOC111781016 [Cucurbita pepo subsp. pepo]	[more]
XP_022925267.1	7.7e-27	92.31	uncharacterized protein LOC111432556 [Cucurbita moschata] >KAG7027625.1 hypothet...	[more]

BLAST of ClCG04G000060 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G000060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HPI7	9.8e-28	93.85	uncharacterized protein LOC111466138 OS=Cucurbita maxima OX=3661 GN=LOC111466138...	[more]
A0A6J1EBA8	3.7e-27	92.31	uncharacterized protein LOC111432556 OS=Cucurbita moschata OX=3662 GN=LOC1114325...	[more]
A0A6J1HS56	1.4e-26	93.75	uncharacterized protein LOC111467297 OS=Cucurbita maxima OX=3661 GN=LOC111467297...	[more]
A0A5A7UM13	3.2e-26	91.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CSQ7	3.2e-26	91.80	uncharacterized protein LOC103504527 OS=Cucumis melo OX=3656 GN=LOC103504527 PE=...	[more]

BLAST of ClCG04G000060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01170.1	2.0e-25	78.13	Protein of unknown function (DUF1138)	[more]
AT1G01170.2	2.0e-25	78.13	Protein of unknown function (DUF1138)	[more]
AT4G00860.1	8.8e-21	62.50	Protein of unknown function (DUF1138)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009515	Protein of unknown function DUF1138	PFAM	PF06592	DUF1138	coord: 65..126 e-value: 1.8E-37 score: 127.2
IPR009515	Protein of unknown function DUF1138	PANTHER	PTHR34267	OS11G0161033 PROTEIN	coord: 65..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR34267:SF1	OS11G0161033 PROTEIN	coord: 65..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G000060.2	ClCG04G000060.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane