ClCG03G015150 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G015150
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	(1->3)-beta-glucan endohydrolase
Location	CG_Chr03: 30098765 .. 30099110 (+)
RNA-Seq Expression	ClCG03G015150
Synteny	ClCG03G015150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAGCTTACATCCATATAAAACATATGTTTACAGTAGCAATATAAGTTTGGGTTATGCAACATTCACCGAAGAAAGAAATCTGAGATGTGGCCATATATTGCAGTTGGGGAAACTGGGTGCCCAACTTGTGGGAATTACAATTCTACAACATCACTTGCAGCTACATACAACAAAAATTTTAAGAGTCATATTTAATTAGCTCTAGCAAGGGGACACCAATGAACCCAAATATTTATATCCAGAGTATATTCAACGAGAATGAAGAGCCTGAAGGGGAGTCGCGGTGTTATGGGATGTTCAATGTTGATTCCACCACACCTATTTATCCGCCTGTGTTTTAA

mRNA sequence

ATGCTTAGCTTACATCCATATAAAACATATGTTTACAGTAGCAATATAAGTTTGGGTTATGCAACATTCACCGAAGAAAGAAATCTGAGATGTGGCCATATATTGCAGTTGGGGAAACTGGGTGCCCAACTTGTGGGAATTACAATTCTACAACATCACTTGCAGCTACATACAACAAAAATTTTAAGAGGGACACCAATGAACCCAAATATTTATATCCAGAGTATATTCAACGAGAATGAAGAGCCTGAAGGGGAGTCGCGGTGTTATGGGATGTTCAATGTTGATTCCACCACACCTATTTATCCGCCTGTGTTTTAA

Coding sequence (CDS)

ATGCTTAGCTTACATCCATATAAAACATATGTTTACAGTAGCAATATAAGTTTGGGTTATGCAACATTCACCGAAGAAAGAAATCTGAGATGTGGCCATATATTGCAGTTGGGGAAACTGGGTGCCCAACTTGTGGGAATTACAATTCTACAACATCACTTGCAGCTACATACAACAAAAATTTTAAGAGGGACACCAATGAACCCAAATATTTATATCCAGAGTATATTCAACGAGAATGAAGAGCCTGAAGGGGAGTCGCGGTGTTATGGGATGTTCAATGTTGATTCCACCACACCTATTTATCCGCCTGTGTTTTAA

Protein sequence

MLSLHPYKTYVYSSNISLGYATFTEERNLRCGHILQLGKLGAQLVGITILQHHLQLHTTKILRGTPMNPNIYIQSIFNENEEPEGESRCYGMFNVDSTTPIYPPVF

Homology

[Close]

BLAST of ClCG03G015150 vs. NCBI nr
Match: XP_038880685.1 (probable glucan endo-1,3-beta-glucosidase BG5 [Benincasa hispida])

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 66/151 (43.71%), Postives = 80/151 (52.98%), Query Frame = 0


Query: 1   MLSLHPYKTYVYSSNISLGYATFTEER-NLRCGHI------------------------- 60
           M+SL+P+KTY YS N+SLGYATF EE  ++R G +                         
Sbjct: 192 MVSLYPHKTYFYSGNMSLGYATFAEENFSIRDGDLSYNNLFDEMMDAFYAAIDKEDVGDV 251

Query: 61  -LQLGKLGAQLVGITILQHHLQLHTTKIL--------------RGTPMNPNIYIQ----S 107
            + +G+ G    G      HL + TT I               +GTPM  NIYIQ    S
Sbjct: 252 AIAVGETGWPTCG------HLNITTTSIAATYNRNFKNHITSGKGTPMKSNIYIQGFIKS 311

[Close]

BLAST of ClCG03G015150 vs. NCBI nr
Match: KAG6590489.1 (putative glucan endo-1,3-beta-glucosidase BG5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 57/145 (39.31%), Postives = 71/145 (48.97%), Query Frame = 0


Query: 1   MLSLHPYKTYVYSSNISLGYATFTEERNLRCGHILQLGKLGAQLVGITILQHHLQ----- 60
           M+S++ Y  YVY  NISLGYAT +E+  L    +L    L  ++V         +     
Sbjct: 186 MVSVYTYDQYVYGGNISLGYATLSEQNTLVRDGMLSYNNLFDEIVDAFYAAMDKENVGDV 245

Query: 61  ---------------LHTTKIL---------------RGTPMNPNIYIQ----SIFNENE 107
                            TT +L               +GTP   NIYI+    SIFNEN+
Sbjct: 246 AIVFGETGWPSCGNYNATTPLLAAEYNRNFKNHISSGKGTPRKENIYIEGFIRSIFNENQ 305

[Close]

BLAST of ClCG03G015150 vs. NCBI nr
Match: TYK10032.1 (lichenase-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 62/150 (41.33%), Postives = 77/150 (51.33%), Query Frame = 0


Query: 1   MLSLHPYKTYVYSSNISLGYATFTEE---------------RNL---------------R 60
           MLSL+PY+ Y Y +NISLGYATFT +                NL                
Sbjct: 195 MLSLNPYEAYAY-NNISLGYATFTPQLEQNPPIRIDGNLSYNNLFDEVVDAFYAAIDKAS 254

Query: 61  CGHI-LQLGKLGAQLVG---------ITILQHHLQLHTTKILRGTPMNPNIYIQ----SI 107
            GH+ + +G+ G    G               + + H +   +GTPM PNIYI+    S+
Sbjct: 255 VGHVAIAIGETGWPTNGGNDGASPKLAATYNINFKNHISS-GKGTPMKPNIYIEGFIKSL 314

[Close]

BLAST of ClCG03G015150 vs. NCBI nr
Match: KAA0055781.1 (lichenase-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 62/150 (41.33%), Postives = 77/150 (51.33%), Query Frame = 0


Query: 1   MLSLHPYKTYVYSSNISLGYATFTEE---------------RNL---------------R 60
           MLSL+PY+ Y Y +NISLGYATFT +                NL                
Sbjct: 195 MLSLNPYEAYAY-NNISLGYATFTPQLEQNPPIRIDGNLSYNNLFDEVVDAFYAAIDKAS 254

Query: 61  CGHI-LQLGKLGAQLVG---------ITILQHHLQLHTTKILRGTPMNPNIYIQ----SI 107
            GH+ + +G+ G    G               + + H +   +GTPM PNIYI+    S+
Sbjct: 255 VGHVAIAIGETGWPTNGGNDGASPKLAATYNINFKNHISS-GKGTPMKPNIYIEGFIKSL 314

[Close]

BLAST of ClCG03G015150 vs. NCBI nr
Match: XP_022968751.1 (probable glucan endo-1,3-beta-glucosidase BG4 [Cucurbita maxima])

HSP 1 Score: 81.3 bits (199), Expect = 5.7e-12
Identity = 58/145 (40.00%), Postives = 73/145 (50.34%), Query Frame = 0


Query: 1   MLSLHPYKTYVYSSNISLGYATFTEERNLRCGHILQLGKLGAQL---------------V 60
           M+S++ Y  YVY  N SLGYAT +E+ +L    +L    L  ++               V
Sbjct: 192 MVSVYTYDQYVYGGNRSLGYATLSEQNSLVRDGMLSYNNLFDEMVDAFYAAIDKENVGDV 251

Query: 61  GITILQHHLQL-----HTTKIL---------------RGTPMNPNIYIQ----SIFNENE 107
            I I +           TT +L               +GTP   NIYI+    SIFNEN+
Sbjct: 252 AIVIGETGWPTCGNYNATTPLLAAEYNRNFKSHISSGKGTPRKENIYIEGFIRSIFNENQ 311

[Close]

BLAST of ClCG03G015150 vs. ExPASy TrEMBL
Match: A0A5A7UQE4 ((1->3)-beta-glucan endohydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001680 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.2e-13
Identity = 62/150 (41.33%), Postives = 77/150 (51.33%), Query Frame = 0


Query: 1   MLSLHPYKTYVYSSNISLGYATFTEE---------------RNL---------------R 60
           MLSL+PY+ Y Y +NISLGYATFT +                NL                
Sbjct: 195 MLSLNPYEAYAY-NNISLGYATFTPQLEQNPPIRIDGNLSYNNLFDEVVDAFYAAIDKAS 254

Query: 61  CGHI-LQLGKLGAQLVG---------ITILQHHLQLHTTKILRGTPMNPNIYIQ----SI 107
            GH+ + +G+ G    G               + + H +   +GTPM PNIYI+    S+
Sbjct: 255 VGHVAIAIGETGWPTNGGNDGASPKLAATYNINFKNHISS-GKGTPMKPNIYIEGFIKSL 314

[Close]

BLAST of ClCG03G015150 vs. ExPASy TrEMBL
Match: A0A5D3CFE1 ((1->3)-beta-glucan endohydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001650 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.2e-13
Identity = 62/150 (41.33%), Postives = 77/150 (51.33%), Query Frame = 0


Query: 1   MLSLHPYKTYVYSSNISLGYATFTEE---------------RNL---------------R 60
           MLSL+PY+ Y Y +NISLGYATFT +                NL                
Sbjct: 195 MLSLNPYEAYAY-NNISLGYATFTPQLEQNPPIRIDGNLSYNNLFDEVVDAFYAAIDKAS 254

Query: 61  CGHI-LQLGKLGAQLVG---------ITILQHHLQLHTTKILRGTPMNPNIYIQ----SI 107
            GH+ + +G+ G    G               + + H +   +GTPM PNIYI+    S+
Sbjct: 255 VGHVAIAIGETGWPTNGGNDGASPKLAATYNINFKNHISS-GKGTPMKPNIYIEGFIKSL 314

[Close]

BLAST of ClCG03G015150 vs. ExPASy TrEMBL
Match: A0A6J1HVR6 ((1->3)-beta-glucan endohydrolase OS=Cucurbita maxima OX=3661 GN=LOC111467895 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.8e-12
Identity = 58/145 (40.00%), Postives = 73/145 (50.34%), Query Frame = 0


Query: 1   MLSLHPYKTYVYSSNISLGYATFTEERNLRCGHILQLGKLGAQL---------------V 60
           M+S++ Y  YVY  N SLGYAT +E+ +L    +L    L  ++               V
Sbjct: 192 MVSVYTYDQYVYGGNRSLGYATLSEQNSLVRDGMLSYNNLFDEMVDAFYAAIDKENVGDV 251

Query: 61  GITILQHHLQL-----HTTKIL---------------RGTPMNPNIYIQ----SIFNENE 107
            I I +           TT +L               +GTP   NIYI+    SIFNEN+
Sbjct: 252 AIVIGETGWPTCGNYNATTPLLAAEYNRNFKSHISSGKGTPRKENIYIEGFIRSIFNENQ 311

[Close]

BLAST of ClCG03G015150 vs. ExPASy TrEMBL
Match: A0A0A0LR03 ((1->3)-beta-glucan endohydrolase OS=Cucumis sativus OX=3659 GN=Csa_2G416760 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.7e-12
Identity = 63/152 (41.45%), Postives = 78/152 (51.32%), Query Frame = 0


Query: 1   MLSLHPYKTYV---YSSNISLGYATFTEER----------NLRCGHILQ---------LG 60
           MLSL+PY  Y    Y++NISLGYATFT +           NL   ++           + 
Sbjct: 195 MLSLYPYDAYAYTGYTNNISLGYATFTSQTEQNPPIRIDGNLYYKNVFDDMVDAFHAAID 254

Query: 61  KLGAQLVGITI------------------LQHHLQL--HTTKILRGTPMNPNIYIQ---- 107
           K  A  V I I                  L ++L    H T   +GTPM PNIYI+    
Sbjct: 255 KACAGDVAIAIGETGWPTEGNYGAGPSLALTYNLNFKNHITS-GKGTPMKPNIYIEGFIR 314

[Close]

BLAST of ClCG03G015150 vs. ExPASy TrEMBL
Match: A0A5A7UIV1 ((1->3)-beta-glucan endohydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001690 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-11
Identity = 60/152 (39.47%), Postives = 75/152 (49.34%), Query Frame = 0


Query: 1   MLSLHPYKTYVY---SSNISLGYATFTE--ERN--------------------------- 60
           MLSL+PY+ Y Y   S+NISLGYA F    E+N                           
Sbjct: 196 MLSLYPYQEYAYTGNSNNISLGYANFNSQLEKNPPIRTYGDLSYNNLFDEMVDTFYAAID 255

Query: 61  -LRCGHI-LQLGKLGAQLVG--------ITILQHHLQLHTTKILRGTPMNPNIYIQ---- 107
               G + + +G+ G    G              + + H +   +GTPM PNIYI+    
Sbjct: 256 KANVGDVPIVIGETGWPTNGNYGGSPSLAATYNRNFKNHISS-GKGTPMKPNIYIEGFIR 315

The following BLAST results are available for this feature:

BLAST of ClCG03G015150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880685.1	1.5e-17	43.71	probable glucan endo-1,3-beta-glucosidase BG5 [Benincasa hispida]	[more]
KAG6590489.1	1.1e-12	39.31	putative glucan endo-1,3-beta-glucosidase BG5, partial [Cucurbita argyrosperma s...	[more]
TYK10032.1	1.5e-12	41.33	lichenase-2-like [Cucumis melo var. makuwa]	[more]
KAA0055781.1	1.5e-12	41.33	lichenase-2-like [Cucumis melo var. makuwa]	[more]
XP_022968751.1	5.7e-12	40.00	probable glucan endo-1,3-beta-glucosidase BG4 [Cucurbita maxima]	[more]

BLAST of ClCG03G015150 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G015150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UQE4	7.2e-13	41.33	(1->3)-beta-glucan endohydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3CFE1	7.2e-13	41.33	(1->3)-beta-glucan endohydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1HVR6	2.8e-12	40.00	(1->3)-beta-glucan endohydrolase OS=Cucurbita maxima OX=3661 GN=LOC111467895 PE=...	[more]
A0A0A0LR03	4.7e-12	41.45	(1->3)-beta-glucan endohydrolase OS=Cucumis sativus OX=3659 GN=Csa_2G416760 PE=3...	[more]
A0A5A7UIV1	1.8e-11	39.47	(1->3)-beta-glucan endohydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]

BLAST of ClCG03G015150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G015150.1	ClCG03G015150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0042973	glucan endo-1,3-beta-D-glucosidase activity