ClCG03G013870 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G013870
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUBN2_3 domain-containing protein
LocationCG_Chr03: 28493905 .. 28494880 (-)
RNA-Seq ExpressionClCG03G013870
SyntenyClCG03G013870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATTAGAGCATGGTGACGAAACCCTAGAAACCTTAGCCGTCGTCGACGAAAACGAATCTAGGCAAGATCTGCCGCCGCCACCTTACCTACCGATGGAGTCTATCGTTGCCGCCGACAGGTACCTCCGGTCACTTAACCCTAGCGTAGCCACTGCACTGCTTCAAAACCAGCCGCCTCCATCGCGTAACCCTAGGGTTCAGAACGTGCCGTTGTCGAATAAATCTGCTTTGATGGGAGCCTCGATGGTACAGAACCTACCGATGCAGATGGAGTTGTTCATTGTCACTGCCACGTCGACCAACTCGCCGACTACTGCTAACACTTCAACCCAAGTGCCAACGATGAAATCAATGACCGCCGTCCACCCTTATGACATCGTGGGATCATCTTTTCAAGCTCCATTGCTGGGATTTCGTGGGTTATCAAGGGCTGCTGTCGTCCAACCAACTGCCAGAAATTTCAGCCCAGTTTAAGATCCAGTGTTCCATGAGGTTTCCGGCACCATCCCCAGCCCTAATGTCGGGGGTGCTCAGTTTTTTCCTCCTACCGTCACTGCCATCGTTGGAGCTCCTCATCAAGCTGTCGGCAACCAACATGACCAGCATGGATCGGTTGGTCTCTCCTTGGCTATGATTCAACAGCAGCTTGTGAATCTCCAGTCGAGTTTCCAACAACAAATCGCTTCCCTTGAGGCAACACTGGACGCTTCCACCAACTTCAATCAAAGTACAGTAAGTTCAGGTGTCTAGCCAGATGTACCGATGTATCCAGAGAATCCGGTAACTGCGATCCCATCATTAACAACTACACCTTATTTGTCTGGACATATGGGGAACTCCACAGGTTAATCATTGGTGAAAAGTTAAATGGTATTTCTCCTCGTCTCAGTCGGTTAAAATGGTACTTGAAGGGCGCCACAAATTTGGGTATCTAACTGGCGAGATACCGAAACCCAGACCAGGAGATCCTTAG

mRNA sequence

ATGGTATTAGAGCATGGTGACGAAACCCTAGAAACCTTAGCCGTCGTCGACGAAAACGAATCTAGGCAAGATCTGCCGCCGCCACCTTACCTACCGATGGAGTCTATCGTTGCCGCCGACAGGTACCTCCGGTCACTTAACCCTAGCGTAGCCACTGCACTGCTTCAAAACCAGCCGCCTCCATCGCGTAACCCTAGGGTTCAGAACGTGCCGTTGTCGAATAAATCTGCTTTGATGGGAGCCTCGATGGTACAGAACCTACCGATGCAGATGGAGTTGTTCATTGTCACTGCCACGTCGACCAACTCGCCGACTACTGCTAACACTTCAACCCAAGTGCCAACGATGAAATCAATGACCGCCGTCCACCCTTATGACATCGTGGGATCATCTTTTCAAGCTCCATTGCTGGGATTTCGTGGGTTATCAAGGGCTGCTGTCGTCCAACCAACTGCCAGAAATTTCAGCCCAGTTTCCGGCACCATCCCCAGCCCTAATGTCGGGGGTGCTCAGTTTTTTCCTCCTACCGTCACTGCCATCGTTGGAGCTCCTCATCAAGCTGTCGGCAACCAACATGACCAGCATGGATCGGTTGGTCTCTCCTTGGCTATGATTCAACAGCAGCTTGTGAATCTCCAGTCGAGTTTCCAACAACAAATCGCTTCCCTTGAGGCAACACTGGACGCTTCCACCAACTTCAATCAAAATGTACCGATGTATCCAGAGAATCCGGTAACTGCGATCCCATCATTAACAACTACACCTTATTTGTCTGGACATATGGGGAACTCCACAGGGCGCCACAAATTTGGGTATCTAACTGGCGAGATACCGAAACCCAGACCAGGAGATCCTTAG

Coding sequence (CDS)

ATGGTATTAGAGCATGGTGACGAAACCCTAGAAACCTTAGCCGTCGTCGACGAAAACGAATCTAGGCAAGATCTGCCGCCGCCACCTTACCTACCGATGGAGTCTATCGTTGCCGCCGACAGGTACCTCCGGTCACTTAACCCTAGCGTAGCCACTGCACTGCTTCAAAACCAGCCGCCTCCATCGCGTAACCCTAGGGTTCAGAACGTGCCGTTGTCGAATAAATCTGCTTTGATGGGAGCCTCGATGGTACAGAACCTACCGATGCAGATGGAGTTGTTCATTGTCACTGCCACGTCGACCAACTCGCCGACTACTGCTAACACTTCAACCCAAGTGCCAACGATGAAATCAATGACCGCCGTCCACCCTTATGACATCGTGGGATCATCTTTTCAAGCTCCATTGCTGGGATTTCGTGGGTTATCAAGGGCTGCTGTCGTCCAACCAACTGCCAGAAATTTCAGCCCAGTTTCCGGCACCATCCCCAGCCCTAATGTCGGGGGTGCTCAGTTTTTTCCTCCTACCGTCACTGCCATCGTTGGAGCTCCTCATCAAGCTGTCGGCAACCAACATGACCAGCATGGATCGGTTGGTCTCTCCTTGGCTATGATTCAACAGCAGCTTGTGAATCTCCAGTCGAGTTTCCAACAACAAATCGCTTCCCTTGAGGCAACACTGGACGCTTCCACCAACTTCAATCAAAATGTACCGATGTATCCAGAGAATCCGGTAACTGCGATCCCATCATTAACAACTACACCTTATTTGTCTGGACATATGGGGAACTCCACAGGGCGCCACAAATTTGGGTATCTAACTGGCGAGATACCGAAACCCAGACCAGGAGATCCTTAG

Protein sequence

MVLEHGDETLETLAVVDENESRQDLPPPPYLPMESIVAADRYLRSLNPSVATALLQNQPPPSRNPRVQNVPLSNKSALMGASMVQNLPMQMELFIVTATSTNSPTTANTSTQVPTMKSMTAVHPYDIVGSSFQAPLLGFRGLSRAAVVQPTARNFSPVSGTIPSPNVGGAQFFPPTVTAIVGAPHQAVGNQHDQHGSVGLSLAMIQQQLVNLQSSFQQQIASLEATLDASTNFNQNVPMYPENPVTAIPSLTTTPYLSGHMGNSTGRHKFGYLTGEIPKPRPGDP
Homology
[Close]
BLAST of ClCG03G013870 vs. NCBI nr
Match: KAA0048808.1 (kirola-like [Cucumis melo var. makuwa] >TYK20760.1 kirola-like [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-05
Identity = 44/115 (38.26%), Postives = 60/115 (52.17%), Query Frame = 0 

Query: 197 SVGLSLAMIQQQLVNLQSSFQQQIASLEATLDASTNFNQNVPMYPENPVTAIPSLTTTPY 256
           +V +S  + QQQL  L    ++QIA+LEATL   T  N ++PMY ENPV + P+L ++PY
Sbjct: 111 NVQVSSGIAQQQLEGL----RKQIAALEATL--RTTSNTSIPMYSENPVISFPTL-SSPY 170

Query: 257 LSGHMGNST--------------------------GRHKFGYLTGEIPKPRPGDP 286
           ++  +  ST                          GRHKFG+L GEIP   P DP
Sbjct: 171 VTNTVALSTAYHFSGDKLNDNNYFSWSQSVKMVLEGRHKFGFLIGEIPCSPPDDP 218

[Close]
BLAST of ClCG03G013870 vs. NCBI nr
Match: XP_038875911.1 (uncharacterized protein LOC120068266 [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-04
Identity = 39/106 (36.79%), Postives = 54/106 (50.94%), Query Frame = 0 

Query: 205 IQQQLVNLQSSFQQQIASLEATLDASTNFNQNVPMYPENPVTAIPSLTTTPYLSGHMGNS 264
           +QQQL    +S QQQ+A L + L    + + ++P+Y ENP+T  P+L T   L+  +GNS
Sbjct: 108 LQQQL----ASLQQQMAVLGSKLKG--HESSSLPIYSENPITVFPTLPTANLLTSTLGNS 167

Query: 265 T-------------------------GRHKFGYLTGEIPKPRPGDP 286
                                     GRH+FGYLT EI +P PGDP
Sbjct: 168 AGMIIGEKLNGQNYFSWSQTIKMVLEGRHRFGYLTREILQPSPGDP 207

[Close]
BLAST of ClCG03G013870 vs. NCBI nr
Match: KAA0041479.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK24353.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 4.0e-04
Identity = 30/78 (38.46%), Postives = 41/78 (52.56%), Query Frame = 0 

Query: 234 NQNVPMYPENPVTAIPSLTTTPYLSGHMGNST--------------------------GR 286
           N +VPMY ENP+T+ P+L ++PY++  M  ST                          GR
Sbjct: 113 NTSVPMYSENPITSFPTL-SSPYVTNTMAQSTAYHFSGDKLNGNNYFSWSQSVKMVLEGR 172

[Close]
BLAST of ClCG03G013870 vs. ExPASy TrEMBL
Match: A0A5A7U0S5 (Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00200 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-05
Identity = 44/115 (38.26%), Postives = 60/115 (52.17%), Query Frame = 0 

Query: 197 SVGLSLAMIQQQLVNLQSSFQQQIASLEATLDASTNFNQNVPMYPENPVTAIPSLTTTPY 256
           +V +S  + QQQL  L    ++QIA+LEATL   T  N ++PMY ENPV + P+L ++PY
Sbjct: 111 NVQVSSGIAQQQLEGL----RKQIAALEATL--RTTSNTSIPMYSENPVISFPTL-SSPY 170

Query: 257 LSGHMGNST--------------------------GRHKFGYLTGEIPKPRPGDP 286
           ++  +  ST                          GRHKFG+L GEIP   P DP
Sbjct: 171 VTNTVALSTAYHFSGDKLNDNNYFSWSQSVKMVLEGRHKFGFLIGEIPCSPPDDP 218

[Close]
BLAST of ClCG03G013870 vs. ExPASy TrEMBL
Match: A0A5A7TJD7 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001330 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-04
Identity = 30/78 (38.46%), Postives = 41/78 (52.56%), Query Frame = 0 

Query: 234 NQNVPMYPENPVTAIPSLTTTPYLSGHMGNST--------------------------GR 286
           N +VPMY ENP+T+ P+L ++PY++  M  ST                          GR
Sbjct: 113 NTSVPMYSENPITSFPTL-SSPYVTNTMAQSTAYHFSGDKLNGNNYFSWSQSVKMVLEGR 172

The following BLAST results are available for this feature:
BLAST of ClCG03G013870 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048808.13.6e-0538.26kirola-like [Cucumis melo var. makuwa] >TYK20760.1 kirola-like [Cucumis melo var... [more]
XP_038875911.11.4e-0436.79uncharacterized protein LOC120068266 [Benincasa hispida][more]
KAA0041479.14.0e-0438.46UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK24353.1 UBN2_3 d... [more]
BLAST of ClCG03G013870 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG03G013870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U0S51.8e-0538.26Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00200 PE... [more]
A0A5A7TJD72.0e-0438.46UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
BLAST of ClCG03G013870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G013870.1ClCG03G013870.1mRNA