ClCG03G013400 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G013400
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Paternally-expressed gene 3 protein
Location	CG_Chr03: 27553945 .. 27555944 (-)
RNA-Seq Expression	ClCG03G013400
Synteny	ClCG03G013400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCTCACCCCATCATACTCCAATCCGATTGCCCGTAATGTGATGGGTGATCCTTTTATTGATGATCCTACTGTTGGGAGTACCTCACAACAACCCACTACACGTCCGACTACATGTATTGGAATGAGTGGTCCTTCTTTTGGTGGTACTACCTCACCCTATCACATTCCACATTTGACTACATGCACTAAAATGAGTGGACTTTCTGTGTTGAATATACCTTAGCATAATCCAATTCTATGCAGCGATTTTGGGCATTTCTCGATGGACAGAAGCAGTAGTAGAGTGTGGTCCTTTCGAAGCAGGACCATCCGTGAGAACTGCAAGAATTTTAAGATGTAGGTAAGAAAATCAAATAAAAACCTCTACAGTGTGCGATGTATCCACGAGATGTGCAAGTGGGCAGTTCGTGCAGTTAGAATGGAGGGTTGTGTCATATTCAAGATCACTAAGTATACAGCCGTGCACAAGTGCTCAATTGAGATTTTAAATCATGACCACCGCCAANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTAAGGTTAAAGTAGTGATAACATATTTAATTTTTTCATTTGTTTAAAAAATCCTCTCAATCTCTCTCTCAAAGCAAAATGAAAACCAGTAGTGATAACCATGATTTCTCGCTTCTTCCTCTCCCTCAACTTTCTTCCTCTCGTTTCTTTGTCTCGCTAAAAAATCCGACTTTTCCACTTGTTGCTTTCTCTTGTTAATTAATGTCTCTATACGAATTTCCTTGAAAATGCAAAAACCTTTGGTTCTTTCAAATCAAATTAAGGAGTAGTGTTTTCCAAGCTAAGTCTACACTTTTTTAAATAAAGCACAAAATGTAGAAGAAACGCATTAGACCGAACTCGTTGGCTGTGGACAACCCATTTTCTATACAACTGCAAAGTTTTGGACACAACATTCTAACGTTTTAAAGGCTATTGAATCATTATATACAATCTGTTACGCACGCCAAGTAAGTAAATGTTAAACCTTTTTTTGCTTATTGTTTATCACTTAACGAGAGAGAAAAAACGAATGTATCAGAGTGACAAAAGATATAGGCGAGAGGAAGAAAGTGGAGCGAGAGGAAAAGAAAAGATGGCTGGAAGAATCGTGTAAACTAGAAAAGAAAGCGAGAGCCCGAAATGAAAGGAAGAAACGAGAGCCTGAAATGAGAACTAGAGTTTTACAGAATTAAAATTTCCAATTTTTTTTCTTTCGTTCCAATTTTTTTTTTTACAAAATAGCAAATGATGGAAGAGAAGTAGCTTTTCATTCGGTTTGGTGGTATATGAGACGACAAAGAAGAATGCTACAATGGAGGTCGTACGAAGGGTATCATGGTGCCAAACACATTGAATCATAGTCAATTGAGTACAATTATATGAACTTTCAAATGTTAGTTCTTCGGAGTTTACATCATAATGAGGGTTAAATACAAGTTAGATTGTGAATGTCCTCCAGTTTTCCTAATGGATGATAACGTTGTTAGATTTCTCCTCTCAGAAATAGATCGTAATAGATCTCCTATATTTTTCAGTTTTGAAGAGACCAATCAAGATCGAACTTTTGATGGCACATTTGCAAAACATGAGCCCATGTTGGCAGCAAGTAACAATAATGAGCCGGATATTTTTCCACCTGTCTATATGGAAAACGAAAACTTGAACCCATGGACAACTAGCCAACATTATTCAAGCCGAAAGCAGGGACGTAGTAAAACCATTGGTGATGCTATTATTGGGAGTCCCTCACCCCATCATACTCCAATCCGATTGCCCGTAATGTGATGGGTGATCCTTTTATTGATGATCCTACTGTTGGGAGTACCTCACAACAACCCACTACACGTCCGACTACATGTATTGGAATGAGTGGTCCTTCTTTTGGTGGTACTACCTCACCCTATCACATTCCACATTTGACTACATGCACTAAAATGAGTGGACTTTCTGTGTTGAATATACCTTAG

mRNA sequence

TCCCTCACCCCATCATACTCCAATCCGATTGCCCGTAATGTGATGGGTGATCCTTTTATTGATGATCCTACTGTTGGGAGTACCTCACAACAACCCACTACACGTCCGACTACATGTATTGGAATGAGTGGTCCTTCTTTTGGTGGTACTACCTCACCCTATCACATTCCACATTTGACTACATGCACTAAAATGAGTGGACTTTCTTCCCTCACCCCATCATACTCCAATCCGATTGCCCGTAATGTGATGGGTGATCCTTTTATTGATGATCCTACTGTTGGGAGTACCTCACAACAACCCACTACACGTCCGACTACATGTATTGGAATGAGTGGTCCTTCTTTTGGTGGTACTACCTCACCCTATCACATTCCACATTTGACTACATGCACTAAAATGAGTGGACTTTCTGTGTTGAATATACCTTAG

Coding sequence (CDS)

TCCCTCACCCCATCATACTCCAATCCGATTGCCCGTAATGTGATGGGTGATCCTTTTATTGATGATCCTACTGTTGGGAGTACCTCACAACAACCCACTACACGTCCGACTACATGTATTGGAATGAGTGGTCCTTCTTTTGGTGGTACTACCTCACCCTATCACATTCCACATTTGACTACATGCACTAAAATGAGTGGACTTTCTTCCCTCACCCCATCATACTCCAATCCGATTGCCCGTAATGTGATGGGTGATCCTTTTATTGATGATCCTACTGTTGGGAGTACCTCACAACAACCCACTACACGTCCGACTACATGTATTGGAATGAGTGGTCCTTCTTTTGGTGGTACTACCTCACCCTATCACATTCCACATTTGACTACATGCACTAAAATGAGTGGACTTTCTGTGTTGAATATACCTTAG

Protein sequence

SLTPSYSNPIARNVMGDPFIDDPTVGSTSQQPTTRPTTCIGMSGPSFGGTTSPYHIPHLTTCTKMSGLSSLTPSYSNPIARNVMGDPFIDDPTVGSTSQQPTTRPTTCIGMSGPSFGGTTSPYHIPHLTTCTKMSGLSVLNIP

Homology

[Close]

BLAST of ClCG03G013400 vs. NCBI nr
Match: OXA61636.1 (Paternally-expressed gene 3 protein [Folsomia candida])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 44/119 (36.97%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 7   SNPIARNVMGDPFIDDPTVGSTSQQPTTRPTTCIGMSGPS----FGGTTSPYHIPHLTTC 66
           S P  ++    P   DPT G T+Q PT+ PTT    SGP+      G T+       TT 
Sbjct: 499 SGPTTQDPTSGPTTQDPTTGPTTQDPTSGPTTQDPTSGPTTQDPTSGPTTQDPTSGPTTQ 558

Query: 67  TKMSGLSSLTPSYSNPIARNVMGDPFIDDPTVGSTSQQPTTRPTTCIGMSGPSFGGTTS 122
              SG ++  P+ S P  ++    P   DPT G T+Q PT+ PTT    SGP+  G TS
Sbjct: 559 DPTSGPTTQDPT-SGPTTQDPTSGPTTQDPTSGPTTQDPTSGPTTQDPTSGPTTQGPTS 616

[Close]

BLAST of ClCG03G013400 vs. NCBI nr
Match: XP_035716686.1 (mucin-2 isoform X1 [Folsomia candida])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 44/119 (36.97%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 7   SNPIARNVMGDPFIDDPTVGSTSQQPTTRPTTCIGMSGPS----FGGTTSPYHIPHLTTC 66
           S P  ++    P   DPT G T+Q PT+ PTT    SGP+      G T+       TT 
Sbjct: 495 SGPTTQDPTSGPTTQDPTTGPTTQDPTSGPTTQDPTSGPTTQDPTSGPTTQDPTSGPTTQ 554

Query: 67  TKMSGLSSLTPSYSNPIARNVMGDPFIDDPTVGSTSQQPTTRPTTCIGMSGPSFGGTTS 122
              SG ++  P+ S P  ++    P   DPT G T+Q PT+ PTT    SGP+  G TS
Sbjct: 555 DPTSGPTTQDPT-SGPTTQDPTSGPTTQDPTSGPTTQDPTSGPTTQDPTSGPTTQGPTS 612

[Close]

BLAST of ClCG03G013400 vs. NCBI nr
Match: XP_035716690.1 (mucin-2 isoform X2 [Folsomia candida])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 44/119 (36.97%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 7   SNPIARNVMGDPFIDDPTVGSTSQQPTTRPTTCIGMSGPS----FGGTTSPYHIPHLTTC 66
           S P  ++    P   DPT G T+Q PT+ PTT    SGP+      G T+       TT 
Sbjct: 378 SGPTTQDPTSGPTTQDPTTGPTTQDPTSGPTTQDPTSGPTTQDPTSGPTTQDPTSGPTTQ 437

Query: 67  TKMSGLSSLTPSYSNPIARNVMGDPFIDDPTVGSTSQQPTTRPTTCIGMSGPSFGGTTS 122
              SG ++  P+ S P  ++    P   DPT G T+Q PT+ PTT    SGP+  G TS
Sbjct: 438 DPTSGPTTQDPT-SGPTTQDPTSGPTTQDPTSGPTTQDPTSGPTTQDPTSGPTTQGPTS 495

[Close]

BLAST of ClCG03G013400 vs. ExPASy TrEMBL
Match: A0A226EYE4 (Paternally-expressed gene 3 protein OS=Folsomia candida OX=158441 GN=Fcan01_01499 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.2e-06
Identity = 44/119 (36.97%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 7   SNPIARNVMGDPFIDDPTVGSTSQQPTTRPTTCIGMSGPS----FGGTTSPYHIPHLTTC 66
           S P  ++    P   DPT G T+Q PT+ PTT    SGP+      G T+       TT 
Sbjct: 499 SGPTTQDPTSGPTTQDPTTGPTTQDPTSGPTTQDPTSGPTTQDPTSGPTTQDPTSGPTTQ 558

Query: 67  TKMSGLSSLTPSYSNPIARNVMGDPFIDDPTVGSTSQQPTTRPTTCIGMSGPSFGGTTS 122
              SG ++  P+ S P  ++    P   DPT G T+Q PT+ PTT    SGP+  G TS
Sbjct: 559 DPTSGPTTQDPT-SGPTTQDPTSGPTTQDPTSGPTTQDPTSGPTTQDPTSGPTTQGPTS 616

The following BLAST results are available for this feature:

BLAST of ClCG03G013400 vs. NCBI nr


Match Name	E-value	Identity	Description
OXA61636.1	1.1e-05	36.97	Paternally-expressed gene 3 protein [Folsomia candida]	[more]
XP_035716686.1	1.1e-05	36.97	mucin-2 isoform X1 [Folsomia candida]	[more]
XP_035716690.1	1.1e-05	36.97	mucin-2 isoform X2 [Folsomia candida]	[more]

BLAST of ClCG03G013400 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G013400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A226EYE4	5.2e-06	36.97	Paternally-expressed gene 3 protein OS=Folsomia candida OX=158441 GN=Fcan01_0149...	[more]

BLAST of ClCG03G013400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G013400.1	ClCG03G013400.1	mRNA