ClCG03G013320 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G013320
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr03: 27422332 .. 27425030 (+)
RNA-Seq Expression	ClCG03G013320
Synteny	ClCG03G013320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTCAAGCTCCGGCCCCTCCAACAACATCAGGGTCCTCCACGGAGGCCTCTTCATCTTTGGCTACACTTCGAGGGGGCTGCAAGTACTCAATACAAAGAGTGTCCCCCCTCCATCTCCAACGCCGGAGGTTCATCCGGTTGGTTCATAGCCGAGGTGAACAAGTTGTCCCCCTTAGCTCTGTCAATAGCCCTCCACAACAGAAGGGTAAGGAGGAAGGAAAAGAGGATGAAGGAGAGCCAGGAGGAAAAAACACCGTGCCAACCAAGGACCCAATGACACGAAGAATGAGGACAAGAATAAGAAGAATACCCGATGTCCACTAGTGATCATATCTAGTGACCCGGGTAGGCTATTTCATTTTCTTCATCTTTTTTTCTTTTCTTTTTTGTTGATCTGTTGGCCTCCACCACCCATTATGGAATGACTTTCTTTTAATGATATTAAAAATTATATTTTATTTGTTTGCATATGATCTTGAGCAATTATAAGTTCATGGTATCCTAACCAATAAATATATATATATATATATACATATATATATATATACATATATATATATATATATATATAGAACACAAGGAAACAACAAAAACAAATGGGTCTCATTTTCCAAATTACCATTTTCGTTTAGGAAAATTTCGTCTTGAGCCAATTTGGATTTCACTACCCAAATTCACCTCATGATCCTTTCCATCTCACTAATGAAATCCACGGAAATTTAAAGTAACAATAATTAATATGTATTTTTTTTCCTAAAGCTTGAGATTTAAACCTCCCTATCCATGATTTATTGAACTAAAAAATATATAAATTATAAAATAGTTTGTATTCTTTTAAAATGTAAGTAACATTTGAAATGTCTACATTCTGCTTTTACTTGGGGAATTTTGGTTGTGGCTATTTCTACTTCAAGTAGTGTGATTTAAAATTCAATGAAAGAGAAAACATTGCAATCAATAGGCTAAAAAGTCAAATGCATGGAAAAATGGTATGTACCTAAATTAGAATCATACCTAAAATCTCCCATTGATTATAATTGCATAATAGACTTTGGAACTCTATGGTAAATGAATACAATAATCAAGAATGTAGACATTTGTTAGTGTGAGAATAATTATAAGTCATTTTGTTTGATCAAATAATGCATAATTCATTTTCTTTGGACCTATTCAATTTAACTTGGATTTGATTTATCCTTCGATCTAACAATGCAAAGATGAAAGTTTCGTCCAAGTATGAAAATGTATTTTATTCAAGCTTTTCAAGGATGTTTTTTCATAGACTATTCCTTTAAATAGAAAGACAAAGTGGGTGCTGTTTGTTGATAATGAGGAAAGAAACTATTTCATTATAATTGAAACATTCAATAATATACCAAAAATTAACTTCAACATAATTTATTCAATCCCTCAATAATTAACATGTATTTATCACTCAATAATTAACATGTACTTTCTTTAAAGTCAAAAAGTTCAAACCACCCCATATTATATTTAAAAAAAGAAAATGAAACACAAAATGTGGGGCTTGAAGACCCTACTGCATTCCAGCCTCGGGCCTTAAAAATTCACCATCAAGCATGTATGTATTAGTGACTAAACATGAAATCTAATAAAACTCAACCTATTAAAGTTTAAGAGCTCAAGAACCAAAATGGAAAGATATAGACAAAGTACAACTAAACTTTCATCCTCCTCAATAACAGAGAAAAAATATATATTTAAAAAAGTTCTTCTGTGCAAATTTGGGTGGGCTGCACAAAGATGAGTGCAGCTCGAGATGCACCAAAGTATTTTTTTTTAGATAAAAAAATGAAGTGCCAAATCTATAAGCTACCAAATACAAAAACAAAAACAATAAGAGTTTTGAACTAAACCTCTACTAAATTTAAGAAATCTTAGAACGATATAATACCTTCCAAATCTCTTTCCCATCACTATTTGACTCAATGCAAGGTTCGGAATGAGATAAGCTTGCACTTGCAACACCTTCAAAATTTAGTGACAACTATATTTAAGCTGCAAACCAAACAATAGGGTAAACAGAGATTCTATTTACATTCAATGATATCTTTAGCAATAAAACCAAAAAGGTGAATACAAAGTCCACTGTGACCATTAAGTAAAGTTCTATTTATAAGGAAAGTAGTACTAAGGTAGAATGGCATTGAATGAGCAAAACACAAGAAACACAAAAATGCTAACTTGATACCACAAAATTACTCAAGTTAGCTGTGGGAGAGGCATTATAGGGCCCTGTGAGCAGCAAAGTAAGCTGACATGTCCTCTTCAAAAGGAGCTGTAAGCCATCTAAGAAGCAACATCACAATCAGTAAACTCAATATTCATGAATCACAAACAATTTAATCTCTAATTCATCTCCACATCCCTGTATAAATATTGCTTCTCTCACTCCCATCTCCAGCACCAATTTGATATTACCTTCGATTTGATTCTTCCTCTCCTTTCGAGTTTCCTGTGCAGACATCAATGGCAGGATTCAGCATCCACAGGGCGATGAGGTTGTTTGTGGTGACTGTGGTGCTTCTGCTTGCAGTGGCGAGATCTCAAGACGCTGGAGGACTTGCACCTTTACCTGCCATGGATGCTGGGACTGGATTTCAGGTGACGTTTCCCAGTGGCGGGGTTCTGCTATCAATGTTCATCTCCCTCGTTGCGCTTCTCTGGCATTAG

mRNA sequence

ATGGATGTCAAGCTCCGGCCCCTCCAACAACATCAGGGTCCTCCACGGAGGCCTCTTCATCTTTGGCTACACTTCGAGGGGGCTGCAAGTACTCAATACAAAGAGTGTCCCCCCTCCATCTCCAACGCCGGAGGTTCATCCGGTTGGTTCATAGCCGAGGTGAACAAGTTGTCCCCCTTAGCTCTGTCAATAGCCCTCCACAACAGAAGGACATCAATGGCAGGATTCAGCATCCACAGGGCGATGAGGTTGTTTGTGGTGACTGTGGTGCTTCTGCTTGCAGTGGCGAGATCTCAAGACGCTGGAGGACTTGCACCTTTACCTGCCATGGATGCTGGGACTGGATTTCAGGTGACGTTTCCCAGTGGCGGGGTTCTGCTATCAATGTTCATCTCCCTCGTTGCGCTTCTCTGGCATTAG

Coding sequence (CDS)

ATGGATGTCAAGCTCCGGCCCCTCCAACAACATCAGGGTCCTCCACGGAGGCCTCTTCATCTTTGGCTACACTTCGAGGGGGCTGCAAGTACTCAATACAAAGAGTGTCCCCCCTCCATCTCCAACGCCGGAGGTTCATCCGGTTGGTTCATAGCCGAGGTGAACAAGTTGTCCCCCTTAGCTCTGTCAATAGCCCTCCACAACAGAAGGACATCAATGGCAGGATTCAGCATCCACAGGGCGATGAGGTTGTTTGTGGTGACTGTGGTGCTTCTGCTTGCAGTGGCGAGATCTCAAGACGCTGGAGGACTTGCACCTTTACCTGCCATGGATGCTGGGACTGGATTTCAGGTGACGTTTCCCAGTGGCGGGGTTCTGCTATCAATGTTCATCTCCCTCGTTGCGCTTCTCTGGCATTAG

Protein sequence

MDVKLRPLQQHQGPPRRPLHLWLHFEGAASTQYKECPPSISNAGGSSGWFIAEVNKLSPLALSIALHNRRTSMAGFSIHRAMRLFVVTVVLLLAVARSQDAGGLAPLPAMDAGTGFQVTFPSGGVLLSMFISLVALLWH

Homology

[Close]

BLAST of ClCG03G013320 vs. NCBI nr
Match: KAA0059092.1 (hypothetical protein E6C27_scaffold601G00030 [Cucumis melo var. makuwa] >TYK18840.1 hypothetical protein E5676_scaffold204G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 4.7e-22
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 60  LALSIALHNRRTSMAGFSIHRAMRLFVVTVVLLLAVARSQDAGGLAPLPAMDAGTGFQVT 119
           ++  ++  N  T MAGFSIHRAM LFVVT+VLLLAVAR+QD  GLAPLPAMDAGTGFQVT
Sbjct: 1   MSADMSSSNGATLMAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVT 60

Query: 120 FPSGGVLLSMFISLVALLWH 140
           F +GG+LLSMFI LVALLWH
Sbjct: 61  FSNGGILLSMFIYLVALLWH 80

[Close]

BLAST of ClCG03G013320 vs. NCBI nr
Match: KGN66478.1 (hypothetical protein Csa_007521 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-19
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 73  MAGFSIHRAMRLFVVTVVLLLAVARSQDAGGLAPLPAMDAGTGFQVTFPSGGVLLSMFIS 132
           MAGFSIHRA  LFVVT+VLLLAVAR+QD  GLAPLPAMDAGTGFQVTF +GG+LLSMFIS
Sbjct: 1   MAGFSIHRAKWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIS 60

Query: 133 LVALLWH 140
           LV LL H
Sbjct: 61  LVVLLLH 67

[Close]

BLAST of ClCG03G013320 vs. ExPASy TrEMBL
Match: A0A5D3D5P4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00320 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.3e-22
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 60  LALSIALHNRRTSMAGFSIHRAMRLFVVTVVLLLAVARSQDAGGLAPLPAMDAGTGFQVT 119
           ++  ++  N  T MAGFSIHRAM LFVVT+VLLLAVAR+QD  GLAPLPAMDAGTGFQVT
Sbjct: 1   MSADMSSSNGATLMAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVT 60

Query: 120 FPSGGVLLSMFISLVALLWH 140
           F +GG+LLSMFI LVALLWH
Sbjct: 61  FSNGGILLSMFIYLVALLWH 80

[Close]

BLAST of ClCG03G013320 vs. ExPASy TrEMBL
Match: A0A0A0LXI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613500 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 73  MAGFSIHRAMRLFVVTVVLLLAVARSQDAGGLAPLPAMDAGTGFQVTFPSGGVLLSMFIS 132
           MAGFSIHRA  LFVVT+VLLLAVAR+QD  GLAPLPAMDAGTGFQVTF +GG+LLSMFIS
Sbjct: 1   MAGFSIHRAKWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIS 60

Query: 133 LVALLWH 140
           LV LL H
Sbjct: 61  LVVLLLH 67

The following BLAST results are available for this feature:

BLAST of ClCG03G013320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059092.1	4.7e-22	75.00	hypothetical protein E6C27_scaffold601G00030 [Cucumis melo var. makuwa] >TYK1884...	[more]
KGN66478.1	2.8e-19	83.58	hypothetical protein Csa_007521 [Cucumis sativus]	[more]

BLAST of ClCG03G013320 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G013320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5P4	2.3e-22	75.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LXI4	1.4e-19	83.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613500 PE=4 SV=1	[more]

BLAST of ClCG03G013320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33659	PROTEIN, PUTATIVE-RELATED-RELATED	coord: 73..139
None	No IPR available	PANTHER	PTHR33659:SF10	SUBFAMILY NOT NAMED	coord: 73..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G013320.2	ClCG03G013320.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane