ClCG03G013240 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G013240
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	chaperonin-like RbcX protein 2, chloroplastic
Location	CG_Chr03: 27223245 .. 27226784 (+)
RNA-Seq Expression	ClCG03G013240
Synteny	ClCG03G013240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCGAATTCAAGAAACCGTCCAGATGAATTGGAGCATGAAAAAACCAAAATATCTAATATTGAAGGGAGATTTCGAAAGCTTTTCGAGCTGGAGAATTTTGGACCTCACCAAATTATCTGGTTAAGATTCATCCAACTTCAAATCTCCCACAGCGCCCCACTTTCCTCCTTTCCCTCACATCTTCCTTCAGCCAAAATAACAATCTAAGACCTCTAATCTCCTGCTTCCTCACATACCCATTTCAAATCTCTGGCTGAAAATAATTAAAGGGATTTCGTTTCGTTTCTCAAATCGACTCACAAACGAGGGGGGTCGACTTTGATTGCCGTATTTCCTCTGGTTTTAGCTTTCTAACAGGATGGTGGGAGCTTTATCTGTAGTGGGTTCTTCAGTGGTGGATTCTCATACTTCCCCTTGTTTGTGTTTGGATGCTTTGCCCACAACCAGCATCAATCTCAAAAGTTGTGGGGATTTTGTAATGAAAAAGAATTCAATGGGTAGAAAGCGTTTGCCGAAACCAAAGCACTTGGATCTAAGCAGCTCGTTCGTCGATAATGGCCGGGAGTGGCTGCTCTCGGCGGATATGATAAATAGGAGTTGGAGGAAGCAGCACAAGAACAGAAGACTTGTGGTTGTTGATGAACTTGGGGGGCAGTATGAAGATAACTTTGACGATGTTAAAATGGTAAGGATGTGAATTTGGAAAATGATTATTCATCTGTATACTTAAGATTGTGAAATTGGATAGGTATTTAAGCATGTTTTGGTAGTTTCTTAAGACATGGTGTTGCTGAAATGTATGTCACTGAATTTGGACAAGAAATCCCATGTAGCTTAATCAACGTTTTAAGTCTGGTTCATGAGTGATTTGACTACGTGGTTCTAGCTTTGTGTAGGATTTAGAGTTCTTTTCATGTTGATAAGACATATTTTTTTGGTACTTCGGGCAGTTCATGTTTCTTTCTAGTTCCTTGATTCTTTTACCATGTGGATAAACATTAATGATATAGAACAACGCAACAATTCTTGTCCTAATAATGTGATTCAGATGTAGATGGGGCTCTTAGCATAGGAAAATTGTGGGGAAATTGTGAAAATCCTTTCTTCCAAATGATCATGTGAAGATTTGGCAGAAAGCTAAGGAAGTTGGCCTTTCTACTAATACTCTAAACGCATGCTAGGTCAAAGCATTAACACATCTGTTCTCTTGCTTGCTAGTGCTTTCGAAAATTGCAGGCCATTTATTCTTGACTATAGTAAGTTAGCCGGAAATGACTTCTTGGTTGACCGTAACAAATGGTATTAGAGTCAAATTTTCAGTTAAACTGTGGTTAGCCGGAATTTCTGGCTTATGTAACATTGGGGAGTGAGTTAGCATAAATACGGCATAAATAAGTAATATAAAACAAAAATGTGTGAACTGTACAAGATTGTCCCACACTAGTACTTCCACATAATTACTATACCAAAAGACCTATTACTAGAATAGCTTTCAATATACGAATTACAATTGTGAGTGCCCAACAACCAATATAGTTCCAAGGTAAGGAATAGAAATCACGTTGGTCAATACAGCCATAATCACTTGTTACTCAAGTCGATTCATGAGGTTTTTTAAAGCCACTTGTGAGATAAACATGCAATACAAAAGCCAACAAGTTGATGCAAGAGGCAACTGAAAATGTTCTTTTTATGGTTATGAGATATGCTTGAGACTTAAGTTTTCCATAAGTTTGTTCTAGTCAAGTCCTGCATTGTCAAATTGTTGGTGGATACTTCTTTTTAGTTTGATTTTAATGATTTTCCAGTTTCTTCAGCTTTATCCTTCTCCCATCCTTTGCTAGTTCATTTGCGTGCAGATTAATTAGCAAACTGACTGAGATTTCTCTGGCTGCAGCAAATACTTAATTATTTTACATACAAAGCTGTAAGGACTGTTATGAACCAGCTGTACGAAATGAACCCCCCACAGTACAGGTGGCTTTACGAGTATGTACTATCTTTTGTTGCACTCTGAGACTGCCTATTTTTCTCTGTGTTACAGTAACTGGGGTCAGTTTACAATGCTGGTTTCGATATAGATGCATGAAATAGTTGCAGTATTTATATCAAGCTAGCTCAAGTTTAGCTGCCAAATTATTTCATGTTAGTATGGACGTGCTCTCAAATTTTGATTCAGATGTTTTCTTATTCACAGTTTCGTGTTATCCAACAAGCCAACAGATGGAAAACATTTCATCCGCAGGCTTGTAAAGGTACTTCTTAAAATTCATACCTACTTCAGGACTTGGATACTTTTTTTTTTATGAGAAGTAACCTTCATTTCATTAATAAGAGGAAACTACAAAAGAGGCACTAGTGATCATAAGAATTGCAAAAAATATTGTCAATGAATAGAGAGAAAAGTAAGGTGTGTTAAAAAAAAGAGTTGAAATCCGTAGCTTTTTCCTTGAAGATGTGACGGTTTTGAGAGAGACGCATATGACCTCTTTACTAATCTATGGCTTGGATACTATTTAGTTGTGCGGAGAAGCAAAACCTGTCCTAATCTATGCTTTGTATATGTTTTTCACTATTGAGTTTAAGGCATGTTTACTTCTGCATCCCAAATATTCCGGTTTAGAGTTAGGACATCAAGATTTAAGGTCATTTATGGTGCGGTAGATGTGGATGGTTGGCTAGTGGCCACAACCACAAAACTTGCCCCCAACCACTATCGACGATGAATTGAACGCACAGCTAAAATGATTTCTTTTACTTCTAGATCCTAAACGTTACAGTTTAGAGTTAGGACGTCAAAATTTAAGGTCATTTACGGTCTTGAGGCACGCCTTGTCAAATAGTGTTTTACTGCACCTGAATCGGCGTTTTCCTAATTGACAGGAACAGCAAGATCTTGCTGAAAGAGTAATGATAACACGCCTCCACCTCTACGGCAAATGGGTGAAGGTATTGCTATCATTATAGTATTCCTTTCCTTCAATATAGTATTTTCCTTTTTTTATGGGAAGACCAGTATTTATATTGGATGGAAACAAAAACTTGCAAAAATTCATTTCTTCTGTGGTGTAGAAATGTAACCATGCTGAAATCTACCAAGAGATCTCGGACGAAAACGTGGAATTAATGCGAGAACGACTTATGCAGACTGTTATATGGCCTTCAGATGACACAAACACAGAGAAGATTGGCTAAAGAAATATTGAGTCATTTTGTCAATTCTTCTTGTATTTTGCATCCTTCAATCATAATTAGTTTGATTGTCGAGTTGCTGATCTTATTCTTACCGATCAAGAAGTAGTAGTTCAGTGCTGCAGTCTTTTTTTGTTGAAGATATGTGTGCAATCAATCGTTATATTGTGTAAGATGTATATACATTTAGCTTCCATTTTAGTTATTCTGAAGGTATTATTATGTAGAGCTGGGATTTCCTCAGAACTCGTGCTTCTATTTATTCATATGCATATTGGAATGAGAGGGTACAAGAATGAGCAATAGTGTGCAATTTGCTGGTTCTTTCTTAGTTTTTCCCACCTTGG

mRNA sequence

ACCGAATTCAAGAAACCGTCCAGATGAATTGGAGCATGAAAAAACCAAAATATCTAATATTGAAGGGAGATTTCGAAAGCTTTTCGAGCTGGAGAATTTTGGACCTCACCAAATTATCTGGTTAAGATTCATCCAACTTCAAATCTCCCACAGCGCCCCACTTTCCTCCTTTCCCTCACATCTTCCTTCAGCCAAAATAACAATCTAAGACCTCTAATCTCCTGCTTCCTCACATACCCATTTCAAATCTCTGGCTGAAAATAATTAAAGGGATTTCGTTTCGTTTCTCAAATCGACTCACAAACGAGGGGGGTCGACTTTGATTGCCGTATTTCCTCTGGTTTTAGCTTTCTAACAGGATGGTGGGAGCTTTATCTGTAGTGGGTTCTTCAGTGGTGGATTCTCATACTTCCCCTTGTTTGTGTTTGGATGCTTTGCCCACAACCAGCATCAATCTCAAAAGTTGTGGGGATTTTGTAATGAAAAAGAATTCAATGGGTAGAAAGCGTTTGCCGAAACCAAAGCACTTGGATCTAAGCAGCTCGTTCGTCGATAATGGCCGGGAGTGGCTGCTCTCGGCGGATATGATAAATAGGAGTTGGAGGAAGCAGCACAAGAACAGAAGACTTGTGGTTGTTGATGAACTTGGGGGGCAGTATGAAGATAACTTTGACGATGTTAAAATGCAAATACTTAATTATTTTACATACAAAGCTGTAAGGACTGTTATGAACCAGCTGTACGAAATGAACCCCCCACAGTACAGGTGGCTTTACGATTTCGTGTTATCCAACAAGCCAACAGATGGAAAACATTTCATCCGCAGGCTTGTAAAGGAACAGCAAGATCTTGCTGAAAGAGTAATGATAACACGCCTCCACCTCTACGGCAAATGGGTGAAGAAATGTAACCATGCTGAAATCTACCAAGAGATCTCGGACGAAAACGTGGAATTAATGCGAGAACGACTTATGCAGACTGTTATATGGCCTTCAGATGACACAAACACAGAGAAGATTGGCTAAAGAAATATTGAGTCATTTTGTCAATTCTTCTTGTATTTTGCATCCTTCAATCATAATTAGTTTGATTGTCGAGTTGCTGATCTTATTCTTACCGATCAAGAAGTAGTAGTTCAGTGCTGCAGTCTTTTTTTGTTGAAGATATGTGTGCAATCAATCGTTATATTGTGTAAGATGTATATACATTTAGCTTCCATTTTAGTTATTCTGAAGGTATTATTATGTAGAGCTGGGATTTCCTCAGAACTCGTGCTTCTATTTATTCATATGCATATTGGAATGAGAGGGTACAAGAATGAGCAATAGTGTGCAATTTGCTGGTTCTTTCTTAGTTTTTCCCACCTTGG

Coding sequence (CDS)

ATGGTGGGAGCTTTATCTGTAGTGGGTTCTTCAGTGGTGGATTCTCATACTTCCCCTTGTTTGTGTTTGGATGCTTTGCCCACAACCAGCATCAATCTCAAAAGTTGTGGGGATTTTGTAATGAAAAAGAATTCAATGGGTAGAAAGCGTTTGCCGAAACCAAAGCACTTGGATCTAAGCAGCTCGTTCGTCGATAATGGCCGGGAGTGGCTGCTCTCGGCGGATATGATAAATAGGAGTTGGAGGAAGCAGCACAAGAACAGAAGACTTGTGGTTGTTGATGAACTTGGGGGGCAGTATGAAGATAACTTTGACGATGTTAAAATGCAAATACTTAATTATTTTACATACAAAGCTGTAAGGACTGTTATGAACCAGCTGTACGAAATGAACCCCCCACAGTACAGGTGGCTTTACGATTTCGTGTTATCCAACAAGCCAACAGATGGAAAACATTTCATCCGCAGGCTTGTAAAGGAACAGCAAGATCTTGCTGAAAGAGTAATGATAACACGCCTCCACCTCTACGGCAAATGGGTGAAGAAATGTAACCATGCTGAAATCTACCAAGAGATCTCGGACGAAAACGTGGAATTAATGCGAGAACGACTTATGCAGACTGTTATATGGCCTTCAGATGACACAAACACAGAGAAGATTGGCTAA

Protein sequence

MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRLPKPKHLDLSSSFVDNGREWLLSADMINRSWRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG

Homology

[Close]

BLAST of ClCG03G013240 vs. NCBI nr
Match: XP_038879928.1 (chaperonin-like RbcX protein 2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 436.0 bits (1120), Expect = 1.9e-118
Identity = 216/222 (97.30%), Postives = 217/222 (97.75%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVM-KKNSMGRKRLPKPKHLDL 60
           MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVM KKN MGR RLPK KHLDL
Sbjct: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKNLMGRNRLPKSKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSWRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKA 120
           SSSFVDNGREWLLSADMINRS RKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKA
Sbjct: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGK+FIRRLVKEQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKYFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of ClCG03G013240 vs. NCBI nr
Match: XP_008450421.1 (PREDICTED: uncharacterized protein LOC103492031 [Cucumis melo] >TYK18852.1 RcbX domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 430.3 bits (1105), Expect = 1.0e-116
Identity = 212/222 (95.50%), Postives = 216/222 (97.30%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRLPKPKHLDL 60
           MVGALS+VGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKK  SMGR+RLPKPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKYSMGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSWRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKA 120
           SSSFVDNG EWLLS DMINRS RKQ KNRRLVVVDELGGQYEDNFDDVKMQ+LNYFTYKA
Sbjct: 61  SSSFVDNGLEWLLSVDMINRSSRKQTKNRRLVVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPPQYRWLYDFVL+NKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of ClCG03G013240 vs. NCBI nr
Match: XP_004139034.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus] >KGN66488.1 hypothetical protein Csa_007379 [Cucumis sativus])

HSP 1 Score: 427.9 bits (1099), Expect = 5.2e-116
Identity = 210/222 (94.59%), Postives = 216/222 (97.30%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRLPKPKHLDL 60
           MVGALS+VGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVMKK  S GR+RLPKPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSWRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKA 120
           SSSFVDNGREWLLS DMINRS RKQ KNRRL+VVDELGGQYEDNFDDVKMQ+LNYFTYKA
Sbjct: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPPQYRWLYDFVL+NKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of ClCG03G013240 vs. NCBI nr
Match: XP_022926878.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata] >KAG7022086.1 Chaperonin-like RbcX protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 422.5 bits (1085), Expect = 2.2e-114
Identity = 206/221 (93.21%), Postives = 212/221 (95.93%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRLPKPKHLDLS 60
           MV  LSVVGSSVVDSHTSPCLCLD LPTTSINLKS GDFVMK+NSMGRKRLPKPKHLDLS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDNGREWLLSADMINRSWRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKAV 120
           SSFVD GREWLLSADMINRS RKQHKNRRLVV+DELGGQYED FDDVKMQILNYFTYKAV
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKWV 180
           RTVMNQLYEMNPP YRWLYDFVLSNKP+DGKHFIR LVKE+QDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

Query: 181 KKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           KKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of ClCG03G013240 vs. NCBI nr
Match: XP_022968239.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 421.4 bits (1082), Expect = 4.8e-114
Identity = 206/221 (93.21%), Postives = 212/221 (95.93%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRLPKPKHLDLS 60
           MV  LSVVGSSVVDSHTSPCLCLD LPTTSINLKS GDFVMKK+SMGRKRLPKPKHLDLS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDILPTTSINLKSSGDFVMKKHSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDNGREWLLSADMINRSWRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKAV 120
           SSFVD GREWLLSADMINRS RKQHKNRRLVV+DELGGQYED FDDVKMQILNYFTYKAV
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKWV 180
           RTVMNQLYEMNPP YRWLYDFVLSNKP+DGKHFIR LVKE+QDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

Query: 181 KKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           KKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of ClCG03G013240 vs. ExPASy Swiss-Prot
Match: Q8L9X2 (Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX2 PE=1 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.1e-63
Identity = 124/217 (57.14%), Postives = 159/217 (73.27%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRLPKPKHLDLS 60
           MV A  VVGS V+DS +SPCLCLDA  T +I  K              K L K ++L+L 
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAHTTGTIRRK--------------KILGKARNLELG 60

Query: 61  SSFVDNGREWLLSADMINRSWRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKAV 120
           SSF  +   + LS   ++R   ++ K + L+V +++ G Y+D F DV+ QI+NYFTYKAV
Sbjct: 61  SSFTGSRIVFRLSPKRVSRIANRKSK-KLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKWV 180
           RTV++QLYEMNPPQY W Y+ +++N+PTDGK F+R L KE Q+LAERVMITRLHLYGKW+
Sbjct: 121 RTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKWI 180

Query: 181 KKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNT 218
           KKC+H +IYQEISDEN+ LMRERLM+TVIWPSDDTN+
Sbjct: 181 KKCDHGKIYQEISDENLALMRERLMETVIWPSDDTNS 202

[Close]

BLAST of ClCG03G013240 vs. ExPASy Swiss-Prot
Match: Q8DIS6 (RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rbcX PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-09
Identity = 33/105 (31.43%), Postives = 52/105 (49.52%), Query Frame = 0


Query: 111 ILNYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLAERVMI 170
           +++Y TY+AVRTV+ QL E +PP+  WL+ F       DG+ ++  L +EQ DL  R++ 
Sbjct: 14  LISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRILT 73

Query: 171 TRLHL-----------------YGKWVKKCNHAEIYQEISDENVE 199
            R HL                      ++C   E   ++S+ NVE
Sbjct: 74  VREHLAEMVADYLPEMLRAGIQQANLQQRCQQLERMTQVSEANVE 118

[Close]

BLAST of ClCG03G013240 vs. ExPASy Swiss-Prot
Match: O86418 (RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbcX PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.3e-08
Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 106 DVKMQILNYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLA 165
           D    + +Y TY+A+ TV+ QL E NPP   WL+ F +  K  DG+ +++ L +EQ DLA
Sbjct: 9   DTAKTLQSYLTYQALMTVLAQLGETNPPLALWLHTFSV-GKVQDGEAYVKELFREQPDLA 68

Query: 166 ERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERL 205
            R+M  R H+  + V +     +   I   N+E  R+ L
Sbjct: 69  LRIMTVREHI-AEEVAEFLPEMVRSGIQQANMEQRRQHL 105

[Close]

BLAST of ClCG03G013240 vs. ExPASy Swiss-Prot
Match: Q44212 (RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.3e-08
Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 106 DVKMQILNYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLA 165
           D    + +Y TY+A+RTV+ QL E NPP   WL++F  + K  DG+ +I  L  E+ DLA
Sbjct: 9   DTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNF-SAGKVQDGEKYIEELFLEKPDLA 68

Query: 166 ERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERL 205
            R+M  R H+  + + +     +   I   N+E  R+ L
Sbjct: 69  LRIMTVREHI-AEEIAEFLPEMVVTGIQQANMEKRRQHL 105

[Close]

BLAST of ClCG03G013240 vs. ExPASy Swiss-Prot
Match: Q55670 (RuBisCO chaperone RbcX OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rbcX PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.8e-05
Identity = 33/113 (29.20%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 113 NYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLAERVMITR 172
           +Y TY+AV  + ++L E NPPQ  WL  ++ S+   +G+ F+  L+ E ++L  R++  R
Sbjct: 18  SYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKELVLRILAVR 77

Query: 173 LHLYGKWVKKCNHAEIYQEISDENVELMR---ERLMQTVI----WPSDDTNTE 219
             +  + V           +++ N+   R   ERL +TV     +PS+ +N E
Sbjct: 78  EDI-AESVLDFLPGMTRNSLAESNIAHRRHLLERLTRTVAEVDNFPSETSNGE 129

[Close]

BLAST of ClCG03G013240 vs. ExPASy TrEMBL
Match: A0A5D3D5P8 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00500 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 5.0e-117
Identity = 212/222 (95.50%), Postives = 216/222 (97.30%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRLPKPKHLDL 60
           MVGALS+VGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKK  SMGR+RLPKPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKYSMGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSWRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKA 120
           SSSFVDNG EWLLS DMINRS RKQ KNRRLVVVDELGGQYEDNFDDVKMQ+LNYFTYKA
Sbjct: 61  SSSFVDNGLEWLLSVDMINRSSRKQTKNRRLVVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPPQYRWLYDFVL+NKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of ClCG03G013240 vs. ExPASy TrEMBL
Match: A0A1S3BNK3 (uncharacterized protein LOC103492031 OS=Cucumis melo OX=3656 GN=LOC103492031 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 5.0e-117
Identity = 212/222 (95.50%), Postives = 216/222 (97.30%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRLPKPKHLDL 60
           MVGALS+VGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKK  SMGR+RLPKPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKYSMGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSWRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKA 120
           SSSFVDNG EWLLS DMINRS RKQ KNRRLVVVDELGGQYEDNFDDVKMQ+LNYFTYKA
Sbjct: 61  SSSFVDNGLEWLLSVDMINRSSRKQTKNRRLVVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPPQYRWLYDFVL+NKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of ClCG03G013240 vs. ExPASy TrEMBL
Match: A0A0A0LXJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613600 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 2.5e-116
Identity = 210/222 (94.59%), Postives = 216/222 (97.30%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRLPKPKHLDL 60
           MVGALS+VGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVMKK  S GR+RLPKPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSWRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKA 120
           SSSFVDNGREWLLS DMINRS RKQ KNRRL+VVDELGGQYEDNFDDVKMQ+LNYFTYKA
Sbjct: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPPQYRWLYDFVL+NKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of ClCG03G013240 vs. ExPASy TrEMBL
Match: A0A6J1EJF5 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433858 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.0e-114
Identity = 206/221 (93.21%), Postives = 212/221 (95.93%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRLPKPKHLDLS 60
           MV  LSVVGSSVVDSHTSPCLCLD LPTTSINLKS GDFVMK+NSMGRKRLPKPKHLDLS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDNGREWLLSADMINRSWRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKAV 120
           SSFVD GREWLLSADMINRS RKQHKNRRLVV+DELGGQYED FDDVKMQILNYFTYKAV
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKWV 180
           RTVMNQLYEMNPP YRWLYDFVLSNKP+DGKHFIR LVKE+QDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

Query: 181 KKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           KKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of ClCG03G013240 vs. ExPASy TrEMBL
Match: A0A6J1HZ31 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467533 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 2.3e-114
Identity = 206/221 (93.21%), Postives = 212/221 (95.93%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRLPKPKHLDLS 60
           MV  LSVVGSSVVDSHTSPCLCLD LPTTSINLKS GDFVMKK+SMGRKRLPKPKHLDLS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDILPTTSINLKSSGDFVMKKHSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDNGREWLLSADMINRSWRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKAV 120
           SSFVD GREWLLSADMINRS RKQHKNRRLVV+DELGGQYED FDDVKMQILNYFTYKAV
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKWV 180
           RTVMNQLYEMNPP YRWLYDFVLSNKP+DGKHFIR LVKE+QDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

Query: 181 KKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           KKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of ClCG03G013240 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 244.6 bits (623), Expect = 7.5e-65
Identity = 124/217 (57.14%), Postives = 159/217 (73.27%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRLPKPKHLDLS 60
           MV A  VVGS V+DS +SPCLCLDA  T +I  K              K L K ++L+L 
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAHTTGTIRRK--------------KILGKARNLELG 60

Query: 61  SSFVDNGREWLLSADMINRSWRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKAV 120
           SSF  +   + LS   ++R   ++ K + L+V +++ G Y+D F DV+ QI+NYFTYKAV
Sbjct: 61  SSFTGSRIVFRLSPKRVSRIANRKSK-KLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKWV 180
           RTV++QLYEMNPPQY W Y+ +++N+PTDGK F+R L KE Q+LAERVMITRLHLYGKW+
Sbjct: 121 RTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKWI 180

Query: 181 KKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNT 218
           KKC+H +IYQEISDEN+ LMRERLM+TVIWPSDDTN+
Sbjct: 181 KKCDHGKIYQEISDENLALMRERLMETVIWPSDDTNS 202

The following BLAST results are available for this feature:

BLAST of ClCG03G013240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879928.1	1.9e-118	97.30	chaperonin-like RbcX protein 2, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_008450421.1	1.0e-116	95.50	PREDICTED: uncharacterized protein LOC103492031 [Cucumis melo] >TYK18852.1 RcbX ...	[more]
XP_004139034.1	5.2e-116	94.59	chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus] >KGN66488.1 hypo...	[more]
XP_022926878.1	2.2e-114	93.21	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata] >KAG7022086.1...	[more]
XP_022968239.1	4.8e-114	93.21	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita maxima]	[more]

BLAST of ClCG03G013240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9X2	1.1e-63	57.14	Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8DIS6	3.4e-09	31.43	RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 ...	[more]
O86418	6.3e-08	35.35	RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) O...	[more]
Q44212	8.3e-08	35.35	RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX...	[more]
Q55670	3.8e-05	29.20	RuBisCO chaperone RbcX OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111170...	[more]

BLAST of ClCG03G013240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5P8	5.0e-117	95.50	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3BNK3	5.0e-117	95.50	uncharacterized protein LOC103492031 OS=Cucumis melo OX=3656 GN=LOC103492031 PE=...	[more]
A0A0A0LXJ9	2.5e-116	94.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613600 PE=4 SV=1	[more]
A0A6J1EJF5	1.0e-114	93.21	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HZ31	2.3e-114	93.21	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of ClCG03G013240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19855.1	7.5e-65	57.14	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 93..218 e-value: 2.4E-49 score: 168.4
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 99..218
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 110..207 e-value: 3.9E-20 score: 72.2
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..221
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 1..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G013240.1	ClCG03G013240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006457	protein folding
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
molecular_function	GO:0044183	protein folding chaperone