ClCG03G013130 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G013130
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionClp R domain-containing protein
LocationCG_Chr03: 27059234 .. 27060746 (+)
RNA-Seq ExpressionClCG03G013130
SyntenyClCG03G013130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCCGGCGCTCGCGTTCTCTGTTCAGCGTCCATTCAACCGTTGGTCCGGCACCAGAAGCCCAGATCGGTCATCTGTTCACCAGCGTTCACAACAATGTTCTCCGTTCAGGTTCACCAGCCCTCATAGCTAAAATTTTGTCTGATTTTGTAGGAAAGCCGAGAGCATTTTCCCCGAGGAACTTCCGAAGTAAGTTTACCCACAAATTTCCCCCCCATTTAATTAGTGTCTTTCTACTGCATTGGTTGATTTCAGGTGGTGTTAATTGGGTTTTTGTTGCTTTCCTTCATAATGTGTGAAAGTTATTTTCTAGTTCACGGCCTCGTAGTAACCATTTCGTTTTTTCTTGTTTTTGAAAATTAAGTCAATGATTTGCCTCTTTTGAATTCTTAACCAAATACTAAAAACAAAAACTTGAAAAAGCTTTTTATTTAGTTTTCAAATTTAGACTTTGGTTTTAAAAACTAGATGCATGATAGCAAGGTGCTCCCCGATGTTTGAAAACCCACCCACGACTTTAATTGTTGTTACTTCTGTCGGAGCTATGACATTATTCCTTGCAACAACCACGAGAATATTATAAAACAATCTAAAGAGGGTCATAGCTTATTTAAAGTAAAAATTCTAAAGAGCGTCATAGCTTATTTAAAGTAAAAAATCTAGAGGTGAAAGAGGTGTTTGTAGGCTTAATTTTCAAAAACTAAAAACTAAAAATCAAATGATTATCCAATGGAGCCTTAACTTTAATGGAGATTTTTATATGGATACCAAATTTGGTTTTCTAATGCAAATGGCCCGAGTTCTGTAAATAATAAAAATTAACATTTTGCTTACGTATCAACATTAAATTTTCCCTTCACGATGTCAAACCTGATGCCATTTCACCTTTGAGAAAGGTCATAAGATCCCAAAATTTTAATGGATGAGAATTTTTACTTTTATAAAAATTGCAATGCACCCTGAAATCATGTTCGGGGTCTCATTGATTCGCGATTTGCCACGAATAAGCTCTAGGGAGAATGTAATGTTGGTTGGTGCTTTATGACGTAAGCAAAAGGTTAGTTGGGTCGTTAAGCACAACTAAATTTGGGTACAAAAATCTCTGTCCTGTCTGAATTAATTTTAAGGACTGTGGTTAGAATGGTTACAATGTTGTGCATTTGAACCTATTCGCTGATACGTTGAGATCTCTTTACTCGCTGCATATTGTAGAATGGCTTCTTATTTCTCTCTTTTTGGCTGTATCACTTTTTCTTATATATGTAAACTGATCTTCCAGCATGTCAATATATCATAGCTCTTGAATCATTCATTATATGACTTATCCTTTTCTGCCTTAAATTTTCAATTAATGTAGAAATGATAGCGGTGTTCATTGTTTGTTGAACTTTTGATGTTTAAGATGGTTAGCAAGAGCAATAAAGTCATTTGCAATGGCAGAATTGGAAGCAAGGAAACTCAAATATCCAAATACAGACACAGAAGAAGCCTTTGCTAATGAGAATTTTAATTGA

mRNA sequence

CCTCCGGCGCTCGCGTTCTCTGTTCAGCGTCCATTCAACCGTTGGTCCGGCACCAGAAGCCCAGATCGGTCATCTGTTCACCAGCGTTCACAACAATGTTCTCCGTTCAGGAAAGCCGAGAGCATTTTCCCCGAGGAACTTCCGAAATGGTTAGCAAGAGCAATAAAGTCATTTGCAATGGCAGAATTGGAAGCAAGGAAACTCAAATATCCAAATACAGACACAGAAGAAGCCTTTGCTAATGAGAATTTTAATTGA

Coding sequence (CDS)

CCTCCGGCGCTCGCGTTCTCTGTTCAGCGTCCATTCAACCGTTGGTCCGGCACCAGAAGCCCAGATCGGTCATCTGTTCACCAGCGTTCACAACAATGTTCTCCGTTCAGGAAAGCCGAGAGCATTTTCCCCGAGGAACTTCCGAAATGGTTAGCAAGAGCAATAAAGTCATTTGCAATGGCAGAATTGGAAGCAAGGAAACTCAAATATCCAAATACAGACACAGAAGAAGCCTTTGCTAATGAGAATTTTAATTGA

Protein sequence

PPALAFSVQRPFNRWSGTRSPDRSSVHQRSQQCSPFRKAESIFPEELPKWLARAIKSFAMAELEARKLKYPNTDTEEAFANENFN
Homology
BLAST of ClCG03G013130 vs. NCBI nr
Match: XP_008439115.1 (PREDICTED: ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 4.0e-08
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0

Query: 35  PFRKAESIFPEELPKWLARAIKSFAMAELEARKLKYPNTDTE 77
           P  K E + PE+LPKW ARAIKSFAMAELEARKLKYPNT TE
Sbjct: 72  PASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTE 113

BLAST of ClCG03G013130 vs. NCBI nr
Match: KAA0033572.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1 [Cucumis melo var. makuwa] >TYK30329.1 ATP-dependent Clp protease ATP-binding subunit CLPT1 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 4.0e-08
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0

Query: 35  PFRKAESIFPEELPKWLARAIKSFAMAELEARKLKYPNTDTE 77
           P  K E + PE+LPKW ARAIKSFAMAELEARKLKYPNT TE
Sbjct: 72  PASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTE 113

BLAST of ClCG03G013130 vs. NCBI nr
Match: XP_022968478.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 67.4 bits (163), Expect = 6.8e-08
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0

Query: 35  PFRKAESIFPEELPKWLARAIKSFAMAELEARKLKYPNTDTE 77
           P  K E I P++LPKW ARAIKSFAMAELEARKLKYPNT TE
Sbjct: 72  PASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTE 113

BLAST of ClCG03G013130 vs. NCBI nr
Match: XP_022945169.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 67.4 bits (163), Expect = 6.8e-08
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0

Query: 35  PFRKAESIFPEELPKWLARAIKSFAMAELEARKLKYPNTDTE 77
           P  K E I P++LPKW ARAIKSFAMAELEARKLKYPNT TE
Sbjct: 72  PASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTE 113

BLAST of ClCG03G013130 vs. NCBI nr
Match: KAG6574124.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 6.8e-08
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0

Query: 35  PFRKAESIFPEELPKWLARAIKSFAMAELEARKLKYPNTDTE 77
           P  K E I P++LPKW ARAIKSFAMAELEARKLKYPNT TE
Sbjct: 72  PASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTE 113

BLAST of ClCG03G013130 vs. ExPASy Swiss-Prot
Match: Q93WL3 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPT1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.8e-07
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 35  PFRKAESIFPEELPKWLARAIKSFAMAELEARKLKYPNTDTE 77
           P  + E+   +++PKW ARAIKS AM ELEARKLKYP+T TE
Sbjct: 71  PIAQPENGSSDKIPKWSARAIKSLAMGELEARKLKYPSTGTE 112

BLAST of ClCG03G013130 vs. ExPASy Swiss-Prot
Match: Q8GW78 (ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPT2 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.0e-06
Identity = 25/29 (86.21%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 48  PKWLARAIKSFAMAELEARKLKYPNTDTE 77
           PKW  RAIKSFAM ELEARKLKYPNT TE
Sbjct: 92  PKWSWRAIKSFAMGELEARKLKYPNTGTE 120

BLAST of ClCG03G013130 vs. ExPASy TrEMBL
Match: A0A5D3E3F8 (ATP-dependent Clp protease ATP-binding subunit CLPT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1044G00010 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0

Query: 35  PFRKAESIFPEELPKWLARAIKSFAMAELEARKLKYPNTDTE 77
           P  K E + PE+LPKW ARAIKSFAMAELEARKLKYPNT TE
Sbjct: 72  PASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTE 113

BLAST of ClCG03G013130 vs. ExPASy TrEMBL
Match: A0A1S3AY13 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103484006 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0

Query: 35  PFRKAESIFPEELPKWLARAIKSFAMAELEARKLKYPNTDTE 77
           P  K E + PE+LPKW ARAIKSFAMAELEARKLKYPNT TE
Sbjct: 72  PASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTE 113

BLAST of ClCG03G013130 vs. ExPASy TrEMBL
Match: A0A6J1HY47 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467707 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.3e-08
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0

Query: 35  PFRKAESIFPEELPKWLARAIKSFAMAELEARKLKYPNTDTE 77
           P  K E I P++LPKW ARAIKSFAMAELEARKLKYPNT TE
Sbjct: 72  PASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTE 113

BLAST of ClCG03G013130 vs. ExPASy TrEMBL
Match: A0A6J1G082 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111449490 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.3e-08
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0

Query: 35  PFRKAESIFPEELPKWLARAIKSFAMAELEARKLKYPNTDTE 77
           P  K E I P++LPKW ARAIKSFAMAELEARKLKYPNT TE
Sbjct: 72  PASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTE 113

BLAST of ClCG03G013130 vs. ExPASy TrEMBL
Match: A0A6J1J1K1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111482587 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.3e-08
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0

Query: 35  PFRKAESIFPEELPKWLARAIKSFAMAELEARKLKYPNTDTE 77
           P  K E + P++LPKW ARAIKSFAMAELEARKLKYPNT TE
Sbjct: 72  PASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTE 113

BLAST of ClCG03G013130 vs. TAIR 10
Match: AT4G25370.1 (Double Clp-N motif protein )

HSP 1 Score: 54.3 bits (129), Expect = 5.6e-08
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 35  PFRKAESIFPEELPKWLARAIKSFAMAELEARKLKYPNTDTE 77
           P  + E+   +++PKW ARAIKS AM ELEARKLKYP+T TE
Sbjct: 71  PIAQPENGSSDKIPKWSARAIKSLAMGELEARKLKYPSTGTE 112

BLAST of ClCG03G013130 vs. TAIR 10
Match: AT4G12060.1 (Double Clp-N motif protein )

HSP 1 Score: 52.4 bits (124), Expect = 2.1e-07
Identity = 25/29 (86.21%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 48  PKWLARAIKSFAMAELEARKLKYPNTDTE 77
           PKW  RAIKSFAM ELEARKLKYPNT TE
Sbjct: 92  PKWSWRAIKSFAMGELEARKLKYPNTGTE 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008439115.14.0e-0878.57PREDICTED: ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-l... [more]
KAA0033572.14.0e-0878.57ATP-dependent Clp protease ATP-binding subunit CLPT1 [Cucumis melo var. makuwa] ... [more]
XP_022968478.16.8e-0878.57ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurb... [more]
XP_022945169.16.8e-0878.57ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurb... [more]
KAG6574124.16.8e-0878.57ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cu... [more]
Match NameE-valueIdentityDescription
Q93WL37.8e-0761.90ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic OS=Arabidops... [more]
Q8GW783.0e-0686.21ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic OS=Arabidops... [more]
Match NameE-valueIdentityDescription
A0A5D3E3F81.9e-0878.57ATP-dependent Clp protease ATP-binding subunit CLPT1 OS=Cucumis melo var. makuwa... [more]
A0A1S3AY131.9e-0878.57ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu... [more]
A0A6J1HY473.3e-0878.57ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu... [more]
A0A6J1G0823.3e-0878.57ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu... [more]
A0A6J1J1K14.3e-0876.19ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu... [more]
Match NameE-valueIdentityDescription
AT4G25370.15.6e-0861.90Double Clp-N motif protein [more]
AT4G12060.12.1e-0786.21Double Clp-N motif protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..37
IPR044217ATP-dependent Clp protease ATP-binding subunit CLPT1/2PANTHERPTHR47016ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTICcoord: 23..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G013130.1ClCG03G013130.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0009532 plastid stroma
molecular_function GO:0005524 ATP binding
molecular_function GO:0008233 peptidase activity