ClCG03G013090 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G013090
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDNA-directed RNA polymerase I subunit RPA1-like
LocationCG_Chr03: 26981605 .. 26984951 (+)
RNA-Seq ExpressionClCG03G013090
SyntenyClCG03G013090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGTCAGTGAATTCTTTAATGACTATCCTTGGAGAAGATTGTCATACAACCTCACTAGTCAATTTTTCAAAAAAGCATCTTATTGTGAAAAGGATTTTGTCTACCTTCAAGAATTCCTGTTGGCACTAGTTTATTGGGCATTTGAAACAATTCCTAAATTTTCAAACATAGATGTTGGATTTGGAAGAAGAATAAGCAACCAAAGTCCAAGAATGATAACATGGGAGTGCTTGGAAGTAGATGAATGGAGAAGTCTTCATGAAAATGTCTTTGAAACAAGTGATGTAAGTACTTACAAATTCTTATTTTCACTCGTTTCAACCAAAAAAACATCCATAGACAAATTGATAAACAAGTGATAGTAGTCTATCACTTGTATATCAATTGTCTAATAGATAGAGATAGAAGTCTATGTTGTTTATTACGATAGAATATTATTGTTGTCTATCACTGATAGACAATGATCTTTATCTATTACTAACAGATAGAATCACAATGATTCTAATATTTTTTTCTCTAATAATTTTACACGTGTTAATTTGTAGTTTTGTATACTTCAACTACATCCAACAGAAGAAGAGTCACAATCAACCACTTTCATATATTTCATAGATTTGAAGGAGAGGAGAAAGGAAAAAAAAAACAAAGAGAAAAGGAACAAGAAGAAAGTGGAATGGAAAAAAAAAATAAAGAAATTCAAAAATCAGTTGAAGAAAAAGGAAAAAAGGTGTCTGCAAAAGAAATATTGGAAGAAATACAAGAGTTGAGAAAATGCCAAAAAAAAGTAGAAGAAAAACAAAAAAAAAAATTGGAACAAGGACAATAAGAAATCATTGGACTATTGAAAACAATTATGTTAGACTTCCATTTGTAAAACTTCAACAGAAACAAAGAGAGTATAAAGACATTATTGAAAAAAATCCTTCTTGTAGCCTTAGAATTCTAGAAGATAATAATAACATTGACATTATGGTTGAGTATGCAGTAAAATATTTATTTGAGGTAAGACTTTGTTATGTAGTATTTTATTTTAATTTATTTAAATATAATCATACATATACCGACTAAAATTGCTTTTTCTTGTAGATTGAAATTGAAAATGAAAGAGAAGAAAATGTTTGTCTAGAACTTTTTTTTGTACAGCAATAAACTTCTATCATTGTTTTTGTTGTTTTTCCTTCTATGATTATGTCATTAACTTGATTTGTATTTGATTTGTAAAGTCATAGATAGACAATAATAAAAGTCTATCCGTGTCTGTCTTAGGTAGACACTGATAGAAGTCTATCAAAGTTTGTTTAAGATAGACGTTAATCCTATCATTGTCTATCTAAGACAGACACTGATATTAATCTATCATGCTTATCTTAGATAGACAATGATAAAAGTCTATCAGTGTCTCTCTTATATAGACAATGATAGTGTAGAGTTTGTTTAAGATAGACACTGATAGAAGTCTATCATTGTCTATCTAAGATAGACATTAATAGACTTCTATTATTGTCTGTCTAAGATAGACACTGATAGATGACTATCTCTGTCTGTCTTATATAGATAATGATAGATTAATTTCGGTGTTTGTCTAAGATAGAAAGCAAGAACAATCTATAAATTCTTTTATTGTAGAAAATTGAGATCCAAACACAAACACAAGATGTTTGAAACCTATTCCAACTGTGAACTTGGAAACACCAAAAACCCAAAAGCTGCCAACACAAGAGGATGCTCAAGTACAAAAGGTTTGAATATTTTCTTAAGCTACTAATTTGATTCTTTTTTTCTTAACCTACTTTCTTTTCTTAGTCATTAAATGTTTATGAGGCTGATAAAAGTCTATCATTGTCTTTAATAGAAAACAATAACAATCAATAAATTATTTTCTTACAGGAAATTGAAGTTGAAGGTTTAGAAAATGTTTTTGAAGATAATGATGAACAAACTTAGATACATAAGGTTTGATTCTTCTCTCAAAATACTTTCTTTTCTAAGTCTCACTGATAAACTTCTATTACTGTCTATCTTTCATAGAAAACAGTAACAATGAATAAATTATTTTATTCCAGGAAATTGAAGTTAAAGGTGGCGAAATTGTCGTTGAAGATGATAATGAAGAAGTTGAAATACAAAAGGTTTGATTCTTTCCTTAAGCTAATTTAACTGGTTTGATTCTTTTTTCTAAACTATTTGATTCTTTTTTTTAAAAAAAAAATATTCTCTACTTAATGAACTGATAGAAATCTATCATTGTCTACCTTCGATAGAAAAAAATAACAATATGTAAACTATTTTATTATAGGAAACTAAAGTTGAAGGTGTGAAAACTGAAGATAATAATATAGAATATGAAAATGATGAAGAAGAAAACAGAAGAAGAGAAAGCAAATCAAAACAGTCAAGAGAATCTGACCTATCTGATGAGGAAGAAAATGAAAGAAGGGAAAAGAGATCAAAGCAACAAAATGAGAAAAAGGTAAATATACTTAATAAACTCTGTTGTTGTCTTCTAAGTCTCTAAGTCTTATGGATAAATAGTAGGATAGACAGTAATAGATAGTAGTTTATTGCTATCTATCAAGGATAGATAGTAATCTATAACTCTTAATCACAATGATATGCTAAGAAAACTCTGCTAATAAATAGGAGTGTGGTTTTCTAAGTCTCTATAATAGGGGGATACACAGTGATATATAGTACTCTATCACTTTCTATCACAGTGATAGTGTTGTTGATATATTGGTTTACTTAAAGGAAACTAAGTATCTCATATTATTCTTTCAATCATAGTCTATCAACTTTCTTCTTCTTTTTCTTCTACTATCAATATCCCATATCATTGTTTCTAAAAATTGTTTTCTTTGCAGCCTATTGAGGAAGAACATCAAGTTCAGGAAGATAAAGTTGAGGAAGACCAACCTCAAGTTGATGAGATTGAAAAGAATCAAGAAATAGGGGAAAAAAAAAAGCAAACAAGTGAAAAGAAGGTAAATAGCAAACTAAGATATTACTCTGTTCACATTCTATTATTATATCATTAACTTTCTTTGATTTTTTCTTACCATCATATTTTCTTACCATTATAGGTTGCTGAAGGAAAAGGGAAACGTAGAAAATTTAGATCAAAAGTGTTAGAAAAAATAGCAACCTTGGAAATGAGAGGCCAAAGAGACAAAGAAAACCAACAACAAAGTCAATCGATAAAGCCTCTCCAAAAAAGAAAGTTGAAAAAAAGGTTGAAAAGAAAGAAATGAAGAAAGTCTCCACAACAACAACAACATCATTGATGGGCAGTGCTCCAAGCTTCGACTTAAACATTTCTCAACTAAAATCTCAATCTCAGTCTTAA

mRNA sequence

ATGATAGTCAGTGAATTCTTTAATGACTATCCTTGGAGAAGATTGTCATACAACCTCACTAGTCAATTTTTCAAAAAAGCATCTTATTGTGAAAAGGATTTTGTCTACCTTCAAGAATTCCTGTTGGCACTAGTTTATTGGGCATTTGAAACAATTCCTAAATTTTCAAACATAGATGTTGGATTTGGAAGAAGAATAAGCAACCAAAGTCCAAGAATGATAACATGGGAGTGCTTGGAAGTAGATGAATGGAGAAGTCTTCATGAAAATGTCTTTGAAACAAGTGATGAAATTGAAGTTAAAGGTGGCGAAATTGTCGTTGAAGATGATAATGAAGAAGTTGAAATACAAAAGGAAACTAAAGTTGAAGGTGTGAAAACTGAAGATAATAATATAGAATATGAAAATGATGAAGAAGAAAACAGAAGAAGAGAAAGCAAATCAAAACAGTCAAGAGAATCTGACCTATCTGATGAGGAAGAAAATGAAAGAAGGGAAAAGAGATCAAAGCAACAAAATGAGAAAAAGCCTATTGAGGAAGAACATCAAGTTCAGGAAGATAAAGTTGAGGAAGACCAACCTCAAGTTGATGAGATTGAAAAGAATCAAGAAATAGGGGAAAAAAAAAAGCAAACAAGTGAAAAGAAGAGGCCAAAGAGACAAAGAAAACCAACAACAAAGTCAATCGATAAAGCCTCTCCAAAAAAGAAAGTTGAAAAAAAGGTTGAAAAGAAAGAAATGAAGAAAGTCTCCACAACAACAACAACATCATTGATGGGCAGTGCTCCAAGCTTCGACTTAAACATTTCTCAACTAAAATCTCAATCTCAGTCTTAA

Coding sequence (CDS)

ATGATAGTCAGTGAATTCTTTAATGACTATCCTTGGAGAAGATTGTCATACAACCTCACTAGTCAATTTTTCAAAAAAGCATCTTATTGTGAAAAGGATTTTGTCTACCTTCAAGAATTCCTGTTGGCACTAGTTTATTGGGCATTTGAAACAATTCCTAAATTTTCAAACATAGATGTTGGATTTGGAAGAAGAATAAGCAACCAAAGTCCAAGAATGATAACATGGGAGTGCTTGGAAGTAGATGAATGGAGAAGTCTTCATGAAAATGTCTTTGAAACAAGTGATGAAATTGAAGTTAAAGGTGGCGAAATTGTCGTTGAAGATGATAATGAAGAAGTTGAAATACAAAAGGAAACTAAAGTTGAAGGTGTGAAAACTGAAGATAATAATATAGAATATGAAAATGATGAAGAAGAAAACAGAAGAAGAGAAAGCAAATCAAAACAGTCAAGAGAATCTGACCTATCTGATGAGGAAGAAAATGAAAGAAGGGAAAAGAGATCAAAGCAACAAAATGAGAAAAAGCCTATTGAGGAAGAACATCAAGTTCAGGAAGATAAAGTTGAGGAAGACCAACCTCAAGTTGATGAGATTGAAAAGAATCAAGAAATAGGGGAAAAAAAAAAGCAAACAAGTGAAAAGAAGAGGCCAAAGAGACAAAGAAAACCAACAACAAAGTCAATCGATAAAGCCTCTCCAAAAAAGAAAGTTGAAAAAAAGGTTGAAAAGAAAGAAATGAAGAAAGTCTCCACAACAACAACAACATCATTGATGGGCAGTGCTCCAAGCTTCGACTTAAACATTTCTCAACTAAAATCTCAATCTCAGTCTTAA

Protein sequence

MIVSEFFNDYPWRRLSYNLTSQFFKKASYCEKDFVYLQEFLLALVYWAFETIPKFSNIDVGFGRRISNQSPRMITWECLEVDEWRSLHENVFETSDEIEVKGGEIVVEDDNEEVEIQKETKVEGVKTEDNNIEYENDEEENRRRESKSKQSRESDLSDEEENERREKRSKQQNEKKPIEEEHQVQEDKVEEDQPQVDEIEKNQEIGEKKKQTSEKKRPKRQRKPTTKSIDKASPKKKVEKKVEKKEMKKVSTTTTTSLMGSAPSFDLNISQLKSQSQS
Homology
[Close]
BLAST of ClCG03G013090 vs. NCBI nr
Match: KAA0038287.1 (DNA-directed RNA polymerase I subunit RPA1-like [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 4.6e-21
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 0 

Query: 5   EFFNDYPWRRLSYNLTSQFFKKASYCEKDFVYLQEFLLALVYWAFETIPKFSNIDVGFGR 64
           E F  YPW RLSY LT QF KKASY +KD VYLQ F LALVYWA E IP+FSN+DVGFGR
Sbjct: 250 EIFKGYPWGRLSYILTYQFLKKASYNDKDVVYLQGFPLALVYWALEKIPRFSNLDVGFGR 309

Query: 65  RISNQSPRMITWECLEVDE 84
           +++ + P ++TWECL+  +
Sbjct: 310 KLAIEGPPIVTWECLKTSD 328

[Close]
BLAST of ClCG03G013090 vs. NCBI nr
Match: XP_038891747.1 (pescadillo homolog [Benincasa hispida])

HSP 1 Score: 99.0 bits (245), Expect = 6.9e-17
Identity = 102/299 (34.11%), Postives = 154/299 (51.51%), Query Frame = 0 

Query: 5   EFFNDYPWRRLSYNLTSQFFKKASYCEKDFVYLQEFLLALVYWAFETIPKFSNIDVGFGR 64
           E F  YPW R+S+ LT +FFKK    +   ++LQ F L LVYWAFE IP+ SN  +GF R
Sbjct: 6   ERFRSYPWGRVSFELTIEFFKKVVINKPSSIFLQGFPLGLVYWAFEIIPRLSNPTIGFAR 65

Query: 65  RISNQSPRMITWECLEVDEWRSLHENVFETSDEIE--VKGGEIVVEDDNEEVE------- 124
           RI +  PR+  WE  E ++W+ ++ N+F+ +  IE   +G E + +D NE+ +       
Sbjct: 66  RIKSDGPRLTQWESQEPNDWQHINNNIFKATGAIEELKRGQEDIKKDINEKHKEILDILG 125

Query: 125 -IQKETKVEGVKTEDNNIEYENDEEENRRRESKSKQSRESDL----------SDEEENER 184
            I+K    +  + E+   +   +  E  +  S S +  ++ L           D+E  + 
Sbjct: 126 HIKKAISDKLPQKEEGGEKQSQESLEKNKAPSSSLELLDASLEVLEAEVNTAKDKEAQDD 185

Query: 185 REKRSKQQNEKKPIEEEHQVQEDKVEEDQPQVDEIEKNQEIGEKK-------KQTSEKKR 244
           +E   ++Q    P E+E + QE+K +ED  + + IEK  +   KK       +   + KR
Sbjct: 186 QENDQQEQLHDDP-EDEEEDQEEKDKEDMTKKNVIEKTLKKSLKKYRPKVVIENIKDNKR 245

Query: 245 PKRQRKPTTKSIDKASPKKKVEKKVEKKEMKKVSTTTTTSLM----GSAPSFDLNISQL 273
           PKRQ KPT K ++ A  +KK +KKV      KVS +  T         APSFDL ISQL
Sbjct: 246 PKRQAKPTKKILENAKKQKKDKKKVSPNVSTKVSPSKATRQSPRWNDDAPSFDLKISQL 303

[Close]
BLAST of ClCG03G013090 vs. ExPASy TrEMBL
Match: A0A5A7T9I0 (DNA-directed RNA polymerase I subunit RPA1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001480 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-21
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 0 

Query: 5   EFFNDYPWRRLSYNLTSQFFKKASYCEKDFVYLQEFLLALVYWAFETIPKFSNIDVGFGR 64
           E F  YPW RLSY LT QF KKASY +KD VYLQ F LALVYWA E IP+FSN+DVGFGR
Sbjct: 250 EIFKGYPWGRLSYILTYQFLKKASYNDKDVVYLQGFPLALVYWALEKIPRFSNLDVGFGR 309

Query: 65  RISNQSPRMITWECLEVDE 84
           +++ + P ++TWECL+  +
Sbjct: 310 KLAIEGPPIVTWECLKTSD 328

The following BLAST results are available for this feature:
BLAST of ClCG03G013090 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0038287.14.6e-2163.29DNA-directed RNA polymerase I subunit RPA1-like [Cucumis melo var. makuwa][more]
XP_038891747.16.9e-1734.11pescadillo homolog [Benincasa hispida][more]
BLAST of ClCG03G013090 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG03G013090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T9I02.2e-2163.29DNA-directed RNA polymerase I subunit RPA1-like OS=Cucumis melo var. makuwa OX=1... [more]
BLAST of ClCG03G013090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..278
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..278
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 225..250

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G013090.1ClCG03G013090.1mRNA