ClCG03G012963 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G012963
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionLINE-1 reverse transcriptase-like
LocationCG_Chr03: 26729882 .. 26730277 (-)
RNA-Seq ExpressionClCG03G012963
SyntenyClCG03G012963
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACATTCACAACCAGTGGAAGAGGGTGGTCTCGACTTATTTGACATAAAGCATCGTATCAAATCTCTCTTTGCTAAGTGGTTTTGGCGCTTTCAACTAGAAAAGGGAGCCTTATGGAGAAATCTCATCAAGGCAAAGTATGGTTCCCACCATTTTGGCCGTAAGCCTACCATCCATTGGGAATCCACAAATAGAAGTCCATGGGCTCATATTATGAAGCATAAGGATATCATTTACAGCAATATACAGTGCGAAGTTGGAAATGGTACCATCACTGCCTTTTGTCTGAGGTGTGGTTTGGCTCCTCTCCTCTCAATCTTATTTTCTCCCGCTTGTTCGCCATTGGCAACAGCAAAGATGCCTCCATTGCTGATGTTGGAACTCTCTTCATGA

mRNA sequence

ATGGCACATTCACAACCAGTGGAAGAGGGTGGTCTCGACTTATTTGACATAAAGCATCGTATCAAATCTCTCTTTGCTAAGTGGTTTTGGCGCTTTCAACTAGAAAAGGGAGCCTTATGGAGAAATCTCATCAAGGCAAAGTATGGTTCCCACCATTTTGGCCGTAAGCCTACCATCCATTGGGAATCCACAAATAGAAGTCCATGGGCTCATATTATGAAGCATAAGGATATCATTTACAGCAATATACAGTGCGAAGTTGGAAATGGTACCATCACTGCCTTTTGTCTGAGGTGTGGTTTGGCTCCTCTCCTCTCAATCTTATTTTCTCCCGCTTGTTCGCCATTGGCAACAGCAAAGATGCCTCCATTGCTGATGTTGGAACTCTCTTCATGA

Coding sequence (CDS)

ATGGCACATTCACAACCAGTGGAAGAGGGTGGTCTCGACTTATTTGACATAAAGCATCGTATCAAATCTCTCTTTGCTAAGTGGTTTTGGCGCTTTCAACTAGAAAAGGGAGCCTTATGGAGAAATCTCATCAAGGCAAAGTATGGTTCCCACCATTTTGGCCGTAAGCCTACCATCCATTGGGAATCCACAAATAGAAGTCCATGGGCTCATATTATGAAGCATAAGGATATCATTTACAGCAATATACAGTGCGAAGTTGGAAATGGTACCATCACTGCCTTTTGTCTGAGGTGTGGTTTGGCTCCTCTCCTCTCAATCTTATTTTCTCCCGCTTGTTCGCCATTGGCAACAGCAAAGATGCCTCCATTGCTGATGTTGGAACTCTCTTCATGA

Protein sequence

MAHSQPVEEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWAHIMKHKDIIYSNIQCEVGNGTITAFCLRCGLAPLLSILFSPACSPLATAKMPPLLMLELSS
Homology
[Close]
BLAST of ClCG03G012963 vs. NCBI nr
Match: KAG2665314.1 (hypothetical protein I3760_15G002700 [Carya illinoinensis])

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-09
Identity = 42/102 (41.18%), Postives = 53/102 (51.96%), Query Frame = 0 

Query: 5   QPVEEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWEST 64
           QP++ GGL + D+K   K+L  KW WR+ LE  ALW+N+I  KYGS   G        + 
Sbjct: 45  QPLDGGGLGIKDLKVFNKALLGKWLWRYHLESEALWKNVIDVKYGSLKGGWCSKASSGAY 104

Query: 65  NRSPWAHIMKHKDIIYSNIQCEVGNGTITAFC--LRCGLAPL 105
             S W  I K  D   SN + +VGNG    F   L CG A L
Sbjct: 105 GVSLWKFIRKGWDFFSSNFRLKVGNGKRVLFWHDLWCGDAAL 146

[Close]
BLAST of ClCG03G012963 vs. NCBI nr
Match: KAG7984487.1 (hypothetical protein I3843_04G163600 [Carya illinoinensis])

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-09
Identity = 37/91 (40.66%), Postives = 48/91 (52.75%), Query Frame = 0 

Query: 5   QPVEEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWEST 64
           QP++ GGL + D+K   K+L  KW WR+ LE  ALW+N+I  KYGS   G        + 
Sbjct: 67  QPLDGGGLGIKDLKVFNKALLGKWLWRYHLESEALWKNVIDVKYGSLRGGWCSKASSGAY 126

Query: 65  NRSPWAHIMKHKDIIYSNIQCEVGNGTITAF 96
             S W  I K  D   SN + +VGNG    F
Sbjct: 127 GVSLWKFIRKGWDFFSSNFRLKVGNGKRVLF 157

[Close]
BLAST of ClCG03G012963 vs. NCBI nr
Match: CAN75409.1 (hypothetical protein VITISV_018961 [Vitis vinifera])

HSP 1 Score: 70.9 bits (172), Expect = 9.5e-09
Identity = 39/99 (39.39%), Postives = 50/99 (50.51%), Query Frame = 0 

Query: 8   EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRS 67
           E+GGL L  +    K+L  KW WRF  EK  LW+ ++ AKYG   FG +     E+    
Sbjct: 225 EKGGLGLRKLVPLNKALLGKWIWRFACEKENLWKQVLLAKYGQEGFGWRTKKVNETFGVG 284

Query: 68  PWAHIMKHKDIIYSNIQCEVGNGTITAFC--LRCGLAPL 105
            W  I+K  D  + N+   VGNGT   FC  L CG   L
Sbjct: 285 VWKEILKENDWCWENMVFTVGNGTKIRFCTGLWCGCTVL 323

[Close]
BLAST of ClCG03G012963 vs. NCBI nr
Match: PON86224.1 (hypothetical protein TorRG33x02_179430, partial [Trema orientale])

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-08
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 0 

Query: 8   EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRS 67
           ++GGL +  +  R K+L  KW  RF  EK ALW  +IK+KYG         I   +T RS
Sbjct: 29  KKGGLGIGKLLIRNKALILKWLCRFPQEKDALWHKMIKSKYGLASNSWDSKIASRTTYRS 88

Query: 68  PWAHIMKHKDIIYSNIQCEVGNG 91
           PW  I+K  DI Y  +  +VGNG
Sbjct: 89  PWKFILKQYDIFYKMVAFKVGNG 111

[Close]
BLAST of ClCG03G012963 vs. NCBI nr
Match: TYK11012.1 (uncharacterized protein E5676_scaffold874G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-08
Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = 0 

Query: 8    EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRS 67
            EEGGL +  ++   K+L +KW WR+  E  ALWR LI+ KY   H G  P+ +  S++++
Sbjct: 1195 EEGGLGISRLQVTNKALLSKWLWRYFSEPNALWRRLIQCKYKGKHPGDIPSNNSSSSSKA 1254

Query: 68   PWAHIMKHKDIIYSNIQCEVGNGTITAF 96
            PW  I+ + D   SN   ++ NG   +F
Sbjct: 1255 PWRSIIDNIDWFKSNQSWDLNNGDQISF 1282

[Close]
BLAST of ClCG03G012963 vs. ExPASy TrEMBL
Match: A0A7C9ABD9 (zf-RVT domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 5   QPVEEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWEST 64
           QP   GGL + D++   ++L  KW WRF  EKG LWR ++  KYG+ +FG  P+    S 
Sbjct: 43  QPFTIGGLGVKDLRLFNEALLGKWLWRFLNEKGKLWREVVALKYGTTNFGWFPSRSNGSY 102

Query: 65  NRSPWAHIMKHKDIIYSNIQCEVGNGTITAF 96
             S W +I+K  +  Y +   EVG GT  +F
Sbjct: 103 GCSLWRYIVKGWERFYPHFSFEVGEGTTISF 133

[Close]
BLAST of ClCG03G012963 vs. ExPASy TrEMBL
Match: A0A7C9A7N5 (zf-RVT domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 5   QPVEEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWEST 64
           QP   GGL + D++   ++L  KW WRF  EKG LWR ++  KYG+ +FG  P+    S 
Sbjct: 43  QPFTIGGLGVKDLRLFNEALLGKWLWRFLNEKGKLWREVVALKYGTTNFGWFPSRSNGSY 102

Query: 65  NRSPWAHIMKHKDIIYSNIQCEVGNGTITAF 96
             S W +I+K  +  Y +   EVG GT  +F
Sbjct: 103 GCSLWRYIVKGWERFYPHFSFEVGEGTTISF 133

[Close]
BLAST of ClCG03G012963 vs. ExPASy TrEMBL
Match: A5C8J0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018961 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.6e-09
Identity = 39/99 (39.39%), Postives = 50/99 (50.51%), Query Frame = 0 

Query: 8   EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRS 67
           E+GGL L  +    K+L  KW WRF  EK  LW+ ++ AKYG   FG +     E+    
Sbjct: 225 EKGGLGLRKLVPLNKALLGKWIWRFACEKENLWKQVLLAKYGQEGFGWRTKKVNETFGVG 284

Query: 68  PWAHIMKHKDIIYSNIQCEVGNGTITAFC--LRCGLAPL 105
            W  I+K  D  + N+   VGNGT   FC  L CG   L
Sbjct: 285 VWKEILKENDWCWENMVFTVGNGTKIRFCTGLWCGCTVL 323

[Close]
BLAST of ClCG03G012963 vs. ExPASy TrEMBL
Match: A0A5A7UV84 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001710 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-08
Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = 0 

Query: 8    EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRS 67
            EEGGL +  ++   K+L +KW WR+  E  ALWR LI+ KY   H G  P+ +  S++++
Sbjct: 1195 EEGGLGISRLQVTNKALLSKWLWRYFSEPNALWRRLIQCKYKGKHPGDIPSNNSSSSSKA 1254

Query: 68   PWAHIMKHKDIIYSNIQCEVGNGTITAF 96
            PW  I+ + D   SN   ++ NG   +F
Sbjct: 1255 PWRSIIDNIDWFKSNQSWDLNNGDQISF 1282

[Close]
BLAST of ClCG03G012963 vs. ExPASy TrEMBL
Match: A0A5D3CI86 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00540 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-08
Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = 0 

Query: 8    EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRS 67
            EEGGL +  ++   K+L +KW WR+  E  ALWR LI+ KY   H G  P+ +  S++++
Sbjct: 1195 EEGGLGISRLQVTNKALLSKWLWRYFSEPNALWRRLIQCKYKGKHPGDIPSNNSSSSSKA 1254

Query: 68   PWAHIMKHKDIIYSNIQCEVGNGTITAF 96
            PW  I+ + D   SN   ++ NG   +F
Sbjct: 1255 PWRSIIDNIDWFKSNQSWDLNNGDQISF 1282

The following BLAST results are available for this feature:
BLAST of ClCG03G012963 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG2665314.15.6e-0941.18hypothetical protein I3760_15G002700 [Carya illinoinensis][more]
KAG7984487.15.6e-0940.66hypothetical protein I3843_04G163600 [Carya illinoinensis][more]
CAN75409.19.5e-0939.39hypothetical protein VITISV_018961 [Vitis vinifera][more]
PON86224.12.1e-0842.17hypothetical protein TorRG33x02_179430, partial [Trema orientale][more]
TYK11012.12.1e-0837.50uncharacterized protein E5676_scaffold874G00540 [Cucumis melo var. makuwa][more]
BLAST of ClCG03G012963 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG03G012963 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7C9ABD91.2e-0939.56zf-RVT domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 P... [more]
A0A7C9A7N51.2e-0939.56zf-RVT domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 P... [more]
A5C8J04.6e-0939.39Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018961 PE=4 SV=1[more]
A0A5A7UV841.0e-0837.50Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3CI861.0e-0837.50Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
BLAST of ClCG03G012963 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G012963.1ClCG03G012963.1mRNA