ClCG03G012340 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G012340
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	serine/arginine-rich SC35-like splicing factor SCL30A
Location	CG_Chr03: 25077150 .. 25081205 (-)
RNA-Seq Expression	ClCG03G012340
Synteny	ClCG03G012340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATCTGAAGCACCGCCGTTTGTTTCTCCATTGAAGATTTCAATTTCATCTTCGAGCCCTAATTTCTTCTTTCTCTGCCGCCGATTCACTCTCTCTTCAAGGTCTCTCTCTCTAACTCTCTCTTCTAAGCATTCACATTCACATAATTACTGCGCTTCTTCAATCGATCTATTCCCGCTTCACTATTTTGAGCTAATTTTCCCAATTTTTGACCTATGATTTCGTATACTGGGGTTCATTAAGTTAATGTTTCATGTTATTGGTAGCCTTGTACTTCGCTTTCTGCCATCGATTTCAGTATAAAAGAAACGATTTTAGATTAATTCTGCTCCTTGATTATTTCTCATTACATGTTAAAAGTACTCTTCAATGGTTAACTTTTCTTCACTTGCACAGCTGCAGCGAGATTCTTAAACAGTGGGCCTTTGTCGTTGGTTGCTGTACAAATGAGGGGTAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGAAGAAGGGGTCGGAGCCCTAGCCCTAGAGGGCGCTATGTGGGACGTGGAAGAGACCTCCCCACTAGTCTTCTAGTTCGTAATCTTCGCCATGACTGCAGGTTTGTTCTGTAGTTATGCTCATGTTTCTATTTGCCCTCGAAGTTCTTTCCTTTTAGTATGACCAATTTTCTTCCCCTAGAAAGTCTGTAGGAGGAAGAGGGGTTGCTTTATTTGATTTTGTTTTGATAGTAGACAGATCTGTCTACAACAAAGGTGCTAAGATAGGGGGAATAACGCATAGTCTAAGGCAGTTAAAAAGGGCTTTCTCTTCAAGCATTTGAATTTTAAAATAATCATGGAATTTCATATTCCGAGAGCTATGAAAGAAACAAAATACAATAGGCCAATGAACTAATGAACTCTTGATAGCTCATTTCATTGTCTTATAAGGCATTCTATTCATTTATGTCAACACAGTATCTTAAGGCCGCTCCCTTCGCTTGGGGCAAGACACTCACCCCTAAGAATGCTTTGTTGTGCTGTGCCTCGGGATTAATTGTACTTTATTCTCCCACTTTCTCTCCTTTGGAAAGATATTGTTATATCTTCAAGAATCTCGTGAAAAGCTCCCATTTTTGTAGAAGTTTTAAATTTTTTTAAATGAAATTATTGTTCATAATTCTGTTTGATTTTTATATGAAACTTTTTGTTCTGAACTTTTGCAAACTTAGTTTTTCTTAACCTCATGCTTAAGCCTTCAAGTCATTGCAATGCAACTAACATGCCTTAGTTTAAAATTGCTGTCTGAACCTAATACATAGTGCGTATCCCACCACATTAGGCAGGTTTTTATTATGTTCTAAGACAGAAGCGAGTAATAGTAATTCAGTGGATTTTCTTTCATTTTTCTTTTCCCTTTGTGGTGCATCGATGATTCAGTTTTGATCTGCATCCAGGAGATGAGAGAAGACCTTTGGTGTCTGAATATAAGAATTTAATATGGTTGCATTCTTTCACGATCTTGTTCTGATTTGCAAGTTGTTTGAGTTTCTTTCTACTTTGTGATTTGGAATAGATCTCTGTATCACTGTTCGTGTTCTGGTACTAATTTTTTTAACTGCATAATCTTTTCTTAAAACACATTTACTGCATACTGGTACTAGTTTGCTGATCAAATATATTGAGTGCTGTTTAATAATTCAATTTAGAGCAAGAAATATGATGAAACCTGGTCTACCACTAATTTGAATTTATTTTTTGACAGACCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCTATTAAGGACATATACCTACCCAAGGATTATTATACTGGGTGAGCATGTCTGAGCTGTGTATGTAGGACTTGCGGATTCTTTGGTACTGGTGTTTTTCTTTTAAAAAGAAATTAGCAAAAATACAATTTTACAACTTGTGCATATGGTTTTTGATTAATTCTGTAAAATTTGTACAACCTTTTTAGCTGATAAATGTTTGATATAATACATTTTCTGTGTTGCTTTCTCAAATTGATGAAGTTAATGGTATTAGATAAAGCGTATTTTCATTAATTTCCTTACTTCTTTTGAACAAAATTTTTTAGCACAGTCCTTGGTAAAAGTCATTGCTGAAGTTTCTGAAGTAAATCCTTCTTAGTGTTTCATCCTTCAAATTATGCATCTGATTACGGGGGCATTTCTTTCTGTTTTTTCTATTCTTTTTCTTTTTCCTTATCACATATTAGGTCTGTTTTTTTGAATGTTTGAAGATTTAACAGTGAAACTAATGTTTTGAAGAAGACATCAAGTAATTAGAGTTCTATTGAAGATGATGTTAATGGTAGTGAAGATTGGAAGGAAGTTGGATTTGAATACATAGAAGATGTTCCCAAGTCTTGAAGAATTTCAAGTCATCTTAAATCTGACACATGCAAGGTCAGCAGCCAAGTGCTTGCTTTATTATCACAGACCTTCCATATTGCAAGGGATATGGTGGACAGTTTTATTAGAGAAGGTTTATGGCAGGCCAAGTACCTGACCTGATTCTGTGGATTTACTTTAACTTTTGTTTTATAACTTTTTCCCTTTTGCTTCTTTTGTGCAACAATTTTGCAGAGAACCACGTGGTTTTGGTTTTGTTCAATATGTAGACCCTGCTGATGCTGCTGATGCTAAACATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGTTGACTGTGGTATTTGCTGAGGAGAACAGGAAGAAGCCATCTGATATGAGGGCAAGGGAGAGAGGAAGGTATGAAGCTGCCCTGTATCATTTTTGGGATACTTTATAGACATGAATGTTTGTAATTTAAGTGTCAAATTATCTGGTGCATTTGCATTTGCATTTGCATATGCATATGTTTTCCAACACTTCTCTTCACGGGAGTTTGGGATAGCTTTTGACATAACGTTCCAACACTAATCACGTGCTTGGAAAAGCACTGTAAGTATTCTTTTTAGTTCTGTTTGGAATCTTTGGAATCACTTTTAGTTATCGAACTGAATACTGTGAAAGACTTGGAAACTGCTTTTATTAGGCTGAAAGCACTCATCCTGTTAATTGGTTTACAGTTCACACTGAAGTGTTCAGTATTGCATCTGTTAAACAAAATTAATATTTCAGTTGTACAAACAGTGGGCGATTTTATGATCGAAGAAGATCTCCTCCACAGTATTCTCGTTCGCCTCGATATTCACGTTCCCCGGCTCAACGTCATGCAAGGTATTCTCGTTCACCAGCTCCACGCCATGCAAGGTCTAGGTCCCGTAGTTATGATTATGCATCCCCACCACCAAAACAGAGGGCTTACTCAAGGTATTTTTTGAAACTATCTATATTTGATATCTAGTTCTCATTATGTATATATAATGTCTTCTGAACCCCTTTTTGAGCCTCAATTCCTTCTATATGTCAATGCAGATCAGTGTCCCCCCGTGACAGACCGGACAGTCGAGAGAGGTCTTTCCCACGACAGCAGAGCCGTGGTAGGTCATTCTCCCGATCTCCACGACTCGATGGTGGTTCAAGAAGTAGGAGTCAGAGTCCAGCACGGGCCGGAAGTCGAAGTCCAAGCCCTGTGAGAGGCCGAAGCCTGCGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCAGGAGCCGAAGTCCACGACGAAGTCCAAGACATGAAGAAGAGTATAGAAGTGAACCGAATGGAGATAGGAGCCCAAGTCAATAGGCAAAACCAGTTTGAAACTTGGGAAGAACAACTACAATGTACTATTTTGCCATTATTAGTTTGATGTTTCCGTTATAGACATCATTTGGTTAGTATTGCTGGGTAGCATGCGTCTGTTCTCTTAGGATTTTATGCGTTATCAAATTGATTGTTGAGTACTTTTCTTTTTTTGCTTTCTTTCGTGGTCTGGTGACACTTCACCTTCACAATATAATTTCGAGCTCTTATATGATATATAGTTTTCTTTTCATAATATCATATTATGTAACATATATTATTACGTCACAAATTAGGCTGTGGGATTTAAACTTTCAACCTCTAGAAGTGTATCAG

mRNA sequence

CAAATCTGAAGCACCGCCGTTTGTTTCTCCATTGAAGATTTCAATTTCATCTTCGAGCCCTAATTTCTTCTTTCTCTGCCGCCGATTCACTCTCTCTTCAAGCTGCAGCGAGATTCTTAAACAGTGGGCCTTTGTCGTTGGTTGCTGTACAAATGAGGGGTAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGAAGAAGGGGTCGGAGCCCTAGCCCTAGAGGGCGCTATGTGGGACGTGGAAGAGACCTCCCCACTAGTCTTCTAGTTCGTAATCTTCGCCATGACTGCAGACCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCTATTAAGGACATATACCTACCCAAGGATTATTATACTGGAGAACCACGTGGTTTTGGTTTTGTTCAATATGTAGACCCTGCTGATGCTGCTGATGCTAAACATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGTTGACTGTGGTATTTGCTGAGGAGAACAGGAAGAAGCCATCTGATATGAGGGCAAGGGAGAGAGGAAGTTGTACAAACAGTGGGCGATTTTATGATCGAAGAAGATCTCCTCCACAGTATTCTCGTTCGCCTCGATATTCACGTTCCCCGGCTCAACGTCATGCAAGGTATTCTCGTTCACCAGCTCCACGCCATGCAAGGTCTAGGTCCCGTAGTTATGATTATGCATCCCCACCACCAAAACAGAGGGCTTACTCAAGATCAGTGTCCCCCCGTGACAGACCGGACAGTCGAGAGAGGTCTTTCCCACGACAGCAGAGCCGTGGTAGGTCATTCTCCCGATCTCCACGACTCGATGGTGGTTCAAGAAGTAGGAGTCAGAGTCCAGCACGGGCCGGAAGTCGAAGTCCAAGCCCTGTGAGAGGCCGAAGCCTGCGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCAGGAGCCGAAGTCCACGACGAAGTCCAAGACATGAAGAAGAGTATAGAAGTGAACCGAATGGAGATAGGAGCCCAAGTCAATAGGCAAAACCAGTTTGAAACTTGGGAAGAACAACTACAATGTACTATTTTGCCATTATTAGTTTGATGTTTCCGTTATAGACATCATTTGGTTAGTATTGCTGGGTAGCATGCGTCTGTTCTCTTAGGATTTTATGCGTTATCAAATTGATTGTTGAGTACTTTTCTTTTTTTGCTTTCTTTCGTGGTCTGGTGACACTTCACCTTCACAATATAATTTCGAGCTCTTATATGATATATAGTTTTCTTTTCATAATATCATATTATGTAACATATATTATTACGTCACAAATTAGGCTGTGGGATTTAAACTTTCAACCTCTAGAAGTGTATCAG

Coding sequence (CDS)

ATGAGGGGTAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGAAGAAGGGGTCGGAGCCCTAGCCCTAGAGGGCGCTATGTGGGACGTGGAAGAGACCTCCCCACTAGTCTTCTAGTTCGTAATCTTCGCCATGACTGCAGACCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCTATTAAGGACATATACCTACCCAAGGATTATTATACTGGAGAACCACGTGGTTTTGGTTTTGTTCAATATGTAGACCCTGCTGATGCTGCTGATGCTAAACATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGTTGACTGTGGTATTTGCTGAGGAGAACAGGAAGAAGCCATCTGATATGAGGGCAAGGGAGAGAGGAAGTTGTACAAACAGTGGGCGATTTTATGATCGAAGAAGATCTCCTCCACAGTATTCTCGTTCGCCTCGATATTCACGTTCCCCGGCTCAACGTCATGCAAGGTATTCTCGTTCACCAGCTCCACGCCATGCAAGGTCTAGGTCCCGTAGTTATGATTATGCATCCCCACCACCAAAACAGAGGGCTTACTCAAGATCAGTGTCCCCCCGTGACAGACCGGACAGTCGAGAGAGGTCTTTCCCACGACAGCAGAGCCGTGGTAGGTCATTCTCCCGATCTCCACGACTCGATGGTGGTTCAAGAAGTAGGAGTCAGAGTCCAGCACGGGCCGGAAGTCGAAGTCCAAGCCCTGTGAGAGGCCGAAGCCTGCGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCAGGAGCCGAAGTCCACGACGAAGTCCAAGACATGAAGAAGAGTATAGAAGTGAACCGAATGGAGATAGGAGCCCAAGTCAATAG

Protein sequence

MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPSDMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSVSPRDRPDSRERSFPRQQSRGRSFSRSPRLDGGSRSRSQSPARAGSRSPSPVRGRSLRRSRSRSKSVSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ

Homology

[Close]

BLAST of ClCG03G012340 vs. NCBI nr
Match: XP_038879567.1 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Benincasa hispida])

HSP 1 Score: 510.4 bits (1313), Expect = 1.0e-140
Identity = 277/291 (95.19%), Postives = 281/291 (96.56%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNL HDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120

Query: 121 DMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHARSRSRSYD 180
           DMRARERGS TNSGR +DRRRSPP+YSRSPRYSRSPAQRHARYSRSP PRHAR+RSRSYD
Sbjct: 121 DMRARERGSHTNSGRLHDRRRSPPRYSRSPRYSRSPAQRHARYSRSPPPRHARTRSRSYD 180

Query: 181 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQQSRGRSFSRSPRLDGGSRSRSQSPARAGS 240
           YASPPPKQ+AYSRSVSPRDRPDSRERSFPRQQSRGR  SRSPRLD GSRSRSQSPARAGS
Sbjct: 181 YASPPPKQKAYSRSVSPRDRPDSRERSFPRQQSRGRP-SRSPRLD-GSRSRSQSPARAGS 240

Query: 241 RSPSPVRGRSLRRSRSRSKSVSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 292
           RSPSPVRGRSL RSRSRSKSVSRSRSRSPR SPRH EEYRSEPNGDRSPSQ
Sbjct: 241 RSPSPVRGRSLSRSRSRSKSVSRSRSRSPRLSPRH-EEYRSEPNGDRSPSQ 288

[Close]

BLAST of ClCG03G012340 vs. NCBI nr
Match: XP_008450302.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cucumis melo])

HSP 1 Score: 503.8 bits (1296), Expect = 9.7e-139
Identity = 271/291 (93.13%), Postives = 276/291 (94.85%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNL HDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 120

Query: 121 DMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHARSRSRSYD 180
           DMRARERGS TNSGRF+DRRRSP +YSRSPRYSRSPAQR  RYSRSPAPRHARSRSRSYD
Sbjct: 121 DMRARERGSHTNSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 180

Query: 181 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQQSRGRSFSRSPRLDGGSRSRSQSPARAGS 240
           YASPPPKQRAYSRSVSPRDRPDSRERSFPRQ+SRGRS+SRSPRLD GSRSRS SP R   
Sbjct: 181 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLD-GSRSRSDSPTR--G 240

Query: 241 RSPSPVRGRSLRRSRSRSKSVSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 292
           RSPSPVRGRSL RSRSRSKSVSRSRSRSP+ SPRHEEEYRSEPNGDRSP Q
Sbjct: 241 RSPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 288

[Close]

BLAST of ClCG03G012340 vs. NCBI nr
Match: XP_038879568.1 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Benincasa hispida])

HSP 1 Score: 500.0 bits (1286), Expect = 1.4e-137
Identity = 274/291 (94.16%), Postives = 278/291 (95.53%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNL HDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120

Query: 121 DMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHARSRSRSYD 180
           DMRARERG    SGR +DRRRSPP+YSRSPRYSRSPAQRHARYSRSP PRHAR+RSRSYD
Sbjct: 121 DMRARERG----SGRLHDRRRSPPRYSRSPRYSRSPAQRHARYSRSPPPRHARTRSRSYD 180

Query: 181 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQQSRGRSFSRSPRLDGGSRSRSQSPARAGS 240
           YASPPPKQ+AYSRSVSPRDRPDSRERSFPRQQSRGR  SRSPRLD GSRSRSQSPARAGS
Sbjct: 181 YASPPPKQKAYSRSVSPRDRPDSRERSFPRQQSRGRP-SRSPRLD-GSRSRSQSPARAGS 240

Query: 241 RSPSPVRGRSLRRSRSRSKSVSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 292
           RSPSPVRGRSL RSRSRSKSVSRSRSRSPR SPRH EEYRSEPNGDRSPSQ
Sbjct: 241 RSPSPVRGRSLSRSRSRSKSVSRSRSRSPRLSPRH-EEYRSEPNGDRSPSQ 284

[Close]

BLAST of ClCG03G012340 vs. NCBI nr
Match: XP_008450303.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Cucumis melo])

HSP 1 Score: 493.4 bits (1269), Expect = 1.3e-135
Identity = 268/291 (92.10%), Postives = 273/291 (93.81%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNL HDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 120

Query: 121 DMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHARSRSRSYD 180
           DMRARERG    SGRF+DRRRSP +YSRSPRYSRSPAQR  RYSRSPAPRHARSRSRSYD
Sbjct: 121 DMRARERG----SGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 180

Query: 181 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQQSRGRSFSRSPRLDGGSRSRSQSPARAGS 240
           YASPPPKQRAYSRSVSPRDRPDSRERSFPRQ+SRGRS+SRSPRLD GSRSRS SP R   
Sbjct: 181 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLD-GSRSRSDSPTR--G 240

Query: 241 RSPSPVRGRSLRRSRSRSKSVSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 292
           RSPSPVRGRSL RSRSRSKSVSRSRSRSP+ SPRHEEEYRSEPNGDRSP Q
Sbjct: 241 RSPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 284

[Close]

BLAST of ClCG03G012340 vs. NCBI nr
Match: XP_004139072.1 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cucumis sativus] >KGN66890.2 hypothetical protein Csa_006988 [Cucumis sativus])

HSP 1 Score: 490.7 bits (1262), Expect = 8.5e-135
Identity = 269/293 (91.81%), Postives = 275/293 (93.86%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNL HDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 120

Query: 121 DMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHARSRSRSYD 180
           DMRARERG    SGR++DRRRSPP   RSPRYSRSPAQR  RYSRSPAPRHARSRSRSYD
Sbjct: 121 DMRARERG----SGRYHDRRRSPP---RSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 180

Query: 181 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQQSRGRSFSRSPRLDGGSRSRSQSPARAGS 240
           YAS PPKQRAYSRS+SPRDRPDSRERSFPRQ+SRGRS+SRSPRLD GSRSRSQSP + GS
Sbjct: 181 YASQPPKQRAYSRSLSPRDRPDSRERSFPRQESRGRSYSRSPRLD-GSRSRSQSPTQPGS 240

Query: 241 RSPSPVRGRSLRRSRSRSKSV--SRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 292
           RSPSPVRGRSL RSRSRSKSV  SRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ
Sbjct: 241 RSPSPVRGRSLSRSRSRSKSVGRSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 285

[Close]

BLAST of ClCG03G012340 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.6e-80
Identity = 194/304 (63.82%), Postives = 213/304 (70.07%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GR RDLPTSLLVRNLRHDCR EDLR+ F QFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120
            +KDIYLP+DYYTG+PRGFGFVQ++DPADAADAKH MDG +LLGRELTVVFAEENRKKP+
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120

Query: 121 DMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHARSRSRSYD 180
           +MRARERG     GRF DRRR+PP+Y     YSR         SRSP PR  RSRSRS D
Sbjct: 121 EMRARERG----GGRFRDRRRTPPRY-----YSR---------SRSPPPRRGRSRSRSGD 180

Query: 181 YASPPPKQRAYSRSVSPR-DRPDSRERSFPRQQSRGRSFSRSPRLDGGSRSRSQSPARAG 240
           Y SPPP+ R + RS+SPR +R D R           RS+SRSP  D GSR RS +P R  
Sbjct: 181 YYSPPPR-RHHPRSISPREERYDGR-----------RSYSRSPASD-GSRGRSLTPVRGK 240

Query: 241 SRSPSPVRGRSLRRS--RSRSKSVSRSRSRSPRRS-----------PRHEEEYRSEPNGD 291
           SRS SP   RS+ RS  RSRS S  R+RS SPRRS            R    Y  EP   
Sbjct: 241 SRSLSPSPRRSISRSPRRSRSPSPKRNRSVSPRRSISRSPRRSRSPRRSRRSYTPEPARS 273

[Close]

BLAST of ClCG03G012340 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.3e-77
Identity = 184/292 (63.01%), Postives = 206/292 (70.55%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVG-RGRDLPTSLLVRNLRHDCRPEDLRRPFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGR+ G R  DLPTSLLVRNLRHDCR EDLRRPF QF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60

Query: 61  GAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKP 120
           G +KDIYLP+DYYTG+PRGFGF+Q++DPADAA+AKHQMDG +LLGRELTVVFAEENRKKP
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKP 120

Query: 121 SDMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHARSRSRSY 180
           ++MR R+RG    S RF DRRRSPP+YSRSP                P  R  RSRSRS 
Sbjct: 121 TEMRTRDRGG--RSNRFQDRRRSPPRYSRSP----------------PPRRGRRSRSRSR 180

Query: 181 DYASPPPKQRAYSRSVSPRDRPDSRERSFPRQQSRGRSFSRSPRLDGGSRSRSQSPARAG 240
            Y SPP K R  SRSVSP+DR   +E          RS+SRSP    GSR RS SP R  
Sbjct: 181 GYNSPPAK-RHQSRSVSPQDRRYEKE----------RSYSRSPP-HNGSRVRSGSPGRVK 240

Query: 241 SRSPSPVRGRSLRRSRSRSKSVSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 292
           S S SP R  S R++RS +   +RS+S  PR+S       R   NGDRSPSQ
Sbjct: 241 SHSRSPRRSVSPRKNRSYTPEQARSQSPVPRQSRSPTPVPRGAQNGDRSPSQ 262

[Close]

BLAST of ClCG03G012340 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 9.5e-28
Identity = 103/248 (41.53%), Postives = 132/248 (53.23%), Query Frame = 0


Query: 2   RGRSYTP-----SPPR---GYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLR 61
           R RSY+P     SPPR   GY        P  R        P+ LL+RNL  D RP DLR
Sbjct: 7   RSRSYSPRPRDRSPPRERKGYDDNRLRERPSSR--DHESSGPSGLLIRNLPLDARPNDLR 66

Query: 62  RPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAE 121
             F +FG +KDIYLP++YYTGEPRGFGFV+Y    DAA+A  +M+  V+ GRE+ +VFAE
Sbjct: 67  DSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAE 126

Query: 122 ENRKKPSDMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHAR 181
           ENRK P +MR     S  +        RSP +  RS   SRSP +R +R+          
Sbjct: 127 ENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRH---------- 186

Query: 182 SRSRSYDYASPPPKQRAYSRSVSPRDRPDSRERS--FPRQQS-----RGRSFSRSPRLDG 235
           S+ R  D  SP  + R+ SRS  PR+  + + R+   PR++      R R  SR      
Sbjct: 187 SKVREDDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTPIRSRCLSR------ 235

[Close]

BLAST of ClCG03G012340 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.6e-27
Identity = 113/285 (39.65%), Postives = 148/285 (51.93%), Query Frame = 0


Query: 4   RSYTP---SPP-RGYGRRGRSPSP---------RGRYVGRGRDLPTSLLVRNLRHDCRPE 63
           R Y+P   SPP RGYG RGRSP P          G   GR      SLLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 64  DLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVV 123
           +LR PF +FG ++D+Y+P+DYY+G+PRGF FV++VD  DA +A+  M+     GRE+TVV
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121

Query: 124 FAEENRKKPSDMRARERGSCTNSGRFYDRRRSPP-QYSRSPRYSRSPAQRHARYSRSPAP 183
            A E+RK+P +MR + R           R R P     RS   SRS +   +R  R P+ 
Sbjct: 122 VASESRKRPEEMRVKTR----------TRSREPSGSRDRSHGRSRSRSISRSRSPRRPSD 181

Query: 184 RHARSRSRSYDYASPPPKQRAYSRSVSPRDRPDSRERSFPRQQSRGRSFSRSPRLDGGSR 243
             +R RSRSY   SP P++    R   PR   D  E    R  S G   + +   D    
Sbjct: 182 SRSRYRSRSY---SPAPRR----RGGPPRGEED--ENYSRRSYSPGYEGAAAAAPDRDRN 241

Query: 244 SRSQSPARAGSRSPSPVRGRSLRRSRSRSKSVSRSRSRSPRRSPR 275
             ++   + G  +    RG      R+ S+S S SRSRS   SPR
Sbjct: 242 GDNEIREKPGYEAEDRRRG-----GRAVSRSPSGSRSRSVEVSPR 262

[Close]

BLAST of ClCG03G012340 vs. ExPASy Swiss-Prot
Match: O75494 (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.0e-27
Identity = 100/248 (40.32%), Postives = 149/248 (60.08%), Query Frame = 0


Query: 36  TSLLVRNLRHDCRPEDLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH 95
           TSL VRN+  D R EDLRR FG++G I D+Y+P D+YT  PRGF +VQ+ D  DA DA H
Sbjct: 10  TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69

Query: 96  QMDGCVLLGRELTVVFAEENRKKPSDMRARERGSCTNSGRF--YDRRRSPPQYSRSPRYS 155
            +D   + GR++ + FA+ +RK P+ M+A+E  +  +S R+  YDR R     S   R S
Sbjct: 70  NLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRS 129

Query: 156 RSPAQRHARYSRSPAPRHAR-----SRSRSY-DYASPPPKQRAYSRSVSPRDRPDSRERS 215
           RS +  +  Y RS +PR++R      RSRS+ D      + R++SRS   +    SR +S
Sbjct: 130 RSRSFDY-NYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRS---KSNSRSRSKS 189

Query: 216 FPRQQSRGRSFSRS---PRLDGGSRSRSQSPARAGSRSPSPVRGRSLRRSRSRSKSVSRS 273
            P+++ + +S SRS    +  G S++ S++  ++GSR     R +   RS+S+S+S SRS
Sbjct: 190 QPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPRSKSQSRSQSRS 249

[Close]

BLAST of ClCG03G012340 vs. ExPASy TrEMBL
Match: A0A1S3BNX5 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491955 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 4.7e-139
Identity = 271/291 (93.13%), Postives = 276/291 (94.85%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNL HDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 120

Query: 121 DMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHARSRSRSYD 180
           DMRARERGS TNSGRF+DRRRSP +YSRSPRYSRSPAQR  RYSRSPAPRHARSRSRSYD
Sbjct: 121 DMRARERGSHTNSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 180

Query: 181 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQQSRGRSFSRSPRLDGGSRSRSQSPARAGS 240
           YASPPPKQRAYSRSVSPRDRPDSRERSFPRQ+SRGRS+SRSPRLD GSRSRS SP R   
Sbjct: 181 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLD-GSRSRSDSPTR--G 240

Query: 241 RSPSPVRGRSLRRSRSRSKSVSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 292
           RSPSPVRGRSL RSRSRSKSVSRSRSRSP+ SPRHEEEYRSEPNGDRSP Q
Sbjct: 241 RSPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 288

[Close]

BLAST of ClCG03G012340 vs. ExPASy TrEMBL
Match: A0A1S3BPL2 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491955 PE=4 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 6.4e-136
Identity = 268/291 (92.10%), Postives = 273/291 (93.81%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNL HDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 120

Query: 121 DMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHARSRSRSYD 180
           DMRARERG    SGRF+DRRRSP +YSRSPRYSRSPAQR  RYSRSPAPRHARSRSRSYD
Sbjct: 121 DMRARERG----SGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 180

Query: 181 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQQSRGRSFSRSPRLDGGSRSRSQSPARAGS 240
           YASPPPKQRAYSRSVSPRDRPDSRERSFPRQ+SRGRS+SRSPRLD GSRSRS SP R   
Sbjct: 181 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLD-GSRSRSDSPTR--G 240

Query: 241 RSPSPVRGRSLRRSRSRSKSVSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 292
           RSPSPVRGRSL RSRSRSKSVSRSRSRSP+ SPRHEEEYRSEPNGDRSP Q
Sbjct: 241 RSPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 284

[Close]

BLAST of ClCG03G012340 vs. ExPASy TrEMBL
Match: A0A0A0LZX6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G630290 PE=4 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 4.1e-135
Identity = 269/293 (91.81%), Postives = 275/293 (93.86%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNL HDCRPEDLRRPFGQFG
Sbjct: 119 MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 178

Query: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKKPS
Sbjct: 179 AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 238

Query: 121 DMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHARSRSRSYD 180
           DMRARERG    SGR++DRRRSPP   RSPRYSRSPAQR  RYSRSPAPRHARSRSRSYD
Sbjct: 239 DMRARERG----SGRYHDRRRSPP---RSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 298

Query: 181 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQQSRGRSFSRSPRLDGGSRSRSQSPARAGS 240
           YAS PPKQRAYSRS+SPRDRPDSRERSFPRQ+SRGRS+SRSPRLD GSRSRSQSP + GS
Sbjct: 299 YASQPPKQRAYSRSLSPRDRPDSRERSFPRQESRGRSYSRSPRLD-GSRSRSQSPTQPGS 358

Query: 241 RSPSPVRGRSLRRSRSRSKSV--SRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 292
           RSPSPVRGRSL RSRSRSKSV  SRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ
Sbjct: 359 RSPSPVRGRSLSRSRSRSKSVGRSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 403

[Close]

BLAST of ClCG03G012340 vs. ExPASy TrEMBL
Match: A0A6J1DH06 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020794 PE=4 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.2e-131
Identity = 263/293 (89.76%), Postives = 271/293 (92.49%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRG--RDLPTSLLVRNLRHDCRPEDLRRPFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GRG  RDLPTSLLVRNLRHDCRPEDLRR FGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHARSRSRS 180
           PSDMRARERGS TNSGRF+DRRRSPP+YSRSPRYSRSPA RHARYSRSPAPRHARSRSRS
Sbjct: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180

Query: 181 YDYASPPPKQRAYSRSVSPRDRPDSRERSFPRQQSRGRSFSRSPRLDGGSRSRSQSPARA 240
           YDY SPPPKQRA SRSVSPRDR DSRERS+PRQ SRGRS+S+SPRL+ GSRSRSQSPAR 
Sbjct: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLN-GSRSRSQSPARG 240

Query: 241 GSRSPSPVRGRSLRRSRSRSKSVSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 292
           GSRS SP RG      RSRS+SV  SRSRSPRRSPRHEEEYRS+PNGDRSPSQ
Sbjct: 241 GSRSQSPARG------RSRSRSV--SRSRSPRRSPRHEEEYRSDPNGDRSPSQ 284

[Close]

BLAST of ClCG03G012340 vs. ExPASy TrEMBL
Match: A0A6J1DIJ4 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020794 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.7e-128
Identity = 260/293 (88.74%), Postives = 268/293 (91.47%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRG--RDLPTSLLVRNLRHDCRPEDLRRPFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GRG  RDLPTSLLVRNLRHDCRPEDLRR FGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHARSRSRS 180
           PSDMRARERG    SGRF+DRRRSPP+YSRSPRYSRSPA RHARYSRSPAPRHARSRSRS
Sbjct: 121 PSDMRARERG----SGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180

Query: 181 YDYASPPPKQRAYSRSVSPRDRPDSRERSFPRQQSRGRSFSRSPRLDGGSRSRSQSPARA 240
           YDY SPPPKQRA SRSVSPRDR DSRERS+PRQ SRGRS+S+SPRL+ GSRSRSQSPAR 
Sbjct: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLN-GSRSRSQSPARG 240

Query: 241 GSRSPSPVRGRSLRRSRSRSKSVSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 292
           GSRS SP RG      RSRS+SV  SRSRSPRRSPRHEEEYRS+PNGDRSPSQ
Sbjct: 241 GSRSQSPARG------RSRSRSV--SRSRSPRRSPRHEEEYRSDPNGDRSPSQ 280

[Close]

BLAST of ClCG03G012340 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 300.8 bits (769), Expect = 1.2e-81
Identity = 194/304 (63.82%), Postives = 213/304 (70.07%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GR RDLPTSLLVRNLRHDCR EDLR+ F QFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120
            +KDIYLP+DYYTG+PRGFGFVQ++DPADAADAKH MDG +LLGRELTVVFAEENRKKP+
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120

Query: 121 DMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHARSRSRSYD 180
           +MRARERG     GRF DRRR+PP+Y     YSR         SRSP PR  RSRSRS D
Sbjct: 121 EMRARERG----GGRFRDRRRTPPRY-----YSR---------SRSPPPRRGRSRSRSGD 180

Query: 181 YASPPPKQRAYSRSVSPR-DRPDSRERSFPRQQSRGRSFSRSPRLDGGSRSRSQSPARAG 240
           Y SPPP+ R + RS+SPR +R D R           RS+SRSP  D GSR RS +P R  
Sbjct: 181 YYSPPPR-RHHPRSISPREERYDGR-----------RSYSRSPASD-GSRGRSLTPVRGK 240

Query: 241 SRSPSPVRGRSLRRS--RSRSKSVSRSRSRSPRRS-----------PRHEEEYRSEPNGD 291
           SRS SP   RS+ RS  RSRS S  R+RS SPRRS            R    Y  EP   
Sbjct: 241 SRSLSPSPRRSISRSPRRSRSPSPKRNRSVSPRRSISRSPRRSRSPRRSRRSYTPEPARS 273

[Close]

BLAST of ClCG03G012340 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 292.7 bits (748), Expect = 3.2e-79
Identity = 170/248 (68.55%), Postives = 188/248 (75.81%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GR RDLPTSLLVRNLRHDCR EDLR+ F QFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120
            +KDIYLP+DYYTG+PRGFGFVQ++DPADAADAKH MDG +LLGRELTVVFAEENRKKP+
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120

Query: 121 DMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHARSRSRSYD 180
           +MRARERG     GRF DRRR+PP+Y     YSR         SRSP PR  RSRSRS D
Sbjct: 121 EMRARERG----GGRFRDRRRTPPRY-----YSR---------SRSPPPRRGRSRSRSGD 180

Query: 181 YASPPPKQRAYSRSVSPR-DRPDSRERSFPRQQSRGRSFSRSPRLDGGSRSRSQSPARAG 240
           Y SPPP+ R + RS+SPR +R D R           RS+SRSP  D GSR RS +P R  
Sbjct: 181 YYSPPPR-RHHPRSISPREERYDGR-----------RSYSRSPASD-GSRGRSLTPVRGK 217

Query: 241 SRSPSPVR 248
           SRS SP +
Sbjct: 241 SRSLSPTQ 217

[Close]

BLAST of ClCG03G012340 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 291.2 bits (744), Expect = 9.2e-79
Identity = 184/292 (63.01%), Postives = 206/292 (70.55%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVG-RGRDLPTSLLVRNLRHDCRPEDLRRPFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGR+ G R  DLPTSLLVRNLRHDCR EDLRRPF QF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60

Query: 61  GAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKP 120
           G +KDIYLP+DYYTG+PRGFGF+Q++DPADAA+AKHQMDG +LLGRELTVVFAEENRKKP
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKP 120

Query: 121 SDMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHARSRSRSY 180
           ++MR R+RG    S RF DRRRSPP+YSRSP                P  R  RSRSRS 
Sbjct: 121 TEMRTRDRGG--RSNRFQDRRRSPPRYSRSP----------------PPRRGRRSRSRSR 180

Query: 181 DYASPPPKQRAYSRSVSPRDRPDSRERSFPRQQSRGRSFSRSPRLDGGSRSRSQSPARAG 240
            Y SPP K R  SRSVSP+DR   +E          RS+SRSP    GSR RS SP R  
Sbjct: 181 GYNSPPAK-RHQSRSVSPQDRRYEKE----------RSYSRSPP-HNGSRVRSGSPGRVK 240

Query: 241 SRSPSPVRGRSLRRSRSRSKSVSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 292
           S S SP R  S R++RS +   +RS+S  PR+S       R   NGDRSPSQ
Sbjct: 241 SHSRSPRRSVSPRKNRSYTPEQARSQSPVPRQSRSPTPVPRGAQNGDRSPSQ 262

[Close]

BLAST of ClCG03G012340 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 290.0 bits (741), Expect = 2.1e-78
Identity = 193/316 (61.08%), Postives = 212/316 (67.09%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GR RDLPTSLLVRNLRHDCR EDLR+ F QFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 61  AIKDIYLPKDYYTG------------EPRGFGFVQYVDPADAADAKHQMDGCVLLGRELT 120
            +KDIYLP+DYYTG            +PRGFGFVQ++DPADAADAKH MDG +LLGRELT
Sbjct: 61  PVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELT 120

Query: 121 VVFAEENRKKPSDMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPA 180
           VVFAEENRKKP++MRARERG      RF DRRR+PP+Y     YSR         SRSP 
Sbjct: 121 VVFAEENRKKPTEMRARERG---GGSRFRDRRRTPPRY-----YSR---------SRSPP 180

Query: 181 PRHARSRSRSYDYASPPPKQRAYSRSVSPR-DRPDSRERSFPRQQSRGRSFSRSPRLDGG 240
           PR  RSRSRS DY SPPP+ R + RS+SPR +R D R           RS+SRSP  D G
Sbjct: 181 PRRGRSRSRSGDYYSPPPR-RHHPRSISPREERYDGR-----------RSYSRSPASD-G 240

Query: 241 SRSRSQSPARAGSRSPSPVRGRSLRRS--RSRSKSVSRSRSRSPRRS-----------PR 291
           SR RS +P R  SRS SP   RS+ RS  RSRS S  R+RS SPRRS            R
Sbjct: 241 SRGRSLTPVRGKSRSLSPSPRRSISRSPRRSRSPSPKRNRSVSPRRSISRSPRRSRSPRR 286

[Close]

BLAST of ClCG03G012340 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 125.6 bits (314), Expect = 6.7e-29
Identity = 103/248 (41.53%), Postives = 132/248 (53.23%), Query Frame = 0


Query: 2   RGRSYTP-----SPPR---GYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLR 61
           R RSY+P     SPPR   GY        P  R        P+ LL+RNL  D RP DLR
Sbjct: 7   RSRSYSPRPRDRSPPRERKGYDDNRLRERPSSR--DHESSGPSGLLIRNLPLDARPNDLR 66

Query: 62  RPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAE 121
             F +FG +KDIYLP++YYTGEPRGFGFV+Y    DAA+A  +M+  V+ GRE+ +VFAE
Sbjct: 67  DSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAE 126

Query: 122 ENRKKPSDMRARERGSCTNSGRFYDRRRSPPQYSRSPRYSRSPAQRHARYSRSPAPRHAR 181
           ENRK P +MR     S  +        RSP +  RS   SRSP +R +R+          
Sbjct: 127 ENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRH---------- 186

Query: 182 SRSRSYDYASPPPKQRAYSRSVSPRDRPDSRERS--FPRQQS-----RGRSFSRSPRLDG 235
           S+ R  D  SP  + R+ SRS  PR+  + + R+   PR++      R R  SR      
Sbjct: 187 SKVREDDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTPIRSRCLSR------ 235

The following BLAST results are available for this feature:

BLAST of ClCG03G012340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879567.1	1.0e-140	95.19	serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Benincasa hisp...	[more]
XP_008450302.1	9.7e-139	93.13	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cuc...	[more]
XP_038879568.1	1.4e-137	94.16	serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Benincasa hisp...	[more]
XP_008450303.1	1.3e-135	92.10	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Cuc...	[more]
XP_004139072.1	8.5e-135	91.81	serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cucumis sativu...	[more]

BLAST of ClCG03G012340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEU4	1.6e-80	63.82	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	1.3e-77	63.01	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q1PDV2	9.5e-28	41.53	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
Q8L3X8	3.6e-27	39.65	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
O75494	8.0e-27	40.32	Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 S...	[more]

BLAST of ClCG03G012340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BNX5	4.7e-139	93.13	serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Cucumis melo...	[more]
A0A1S3BPL2	6.4e-136	92.10	serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Cucumis melo...	[more]
A0A0A0LZX6	4.1e-135	91.81	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G630290 PE=4 SV...	[more]
A0A6J1DH06	1.2e-131	89.76	serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Momordica ch...	[more]
A0A6J1DIJ4	1.7e-128	88.74	serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Momordica ch...	[more]

BLAST of ClCG03G012340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55310.1	1.2e-81	63.82	SC35-like splicing factor 33	[more]
AT1G55310.2	3.2e-79	68.55	SC35-like splicing factor 33	[more]
AT3G13570.1	9.2e-79	63.01	SC35-like splicing factor 30A	[more]
AT1G55310.3	2.1e-78	61.08	SC35-like splicing factor 33	[more]
AT5G18810.1	6.7e-29	41.53	SC35-like splicing factor 28	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 37..110 e-value: 3.7E-20 score: 83.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 38..107 e-value: 1.5E-18 score: 66.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 36..114 score: 16.926517
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 30..144 e-value: 2.4E-25 score: 91.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 270..284
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..291
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..240
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..161
None	No IPR available	PANTHER	PTHR23147:SF155	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A	coord: 1..161
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 36..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G012340.1	ClCG03G012340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding