ClCG03G012220 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G012220
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr03: 24654593 .. 24655912 (-)
RNA-Seq ExpressionClCG03G012220
SyntenyClCG03G012220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAGTTTATGTCACAAAAGGGGTGATGTTTACTGTCCTCACATCTCCTCTTGGGTTGAGCGCGATAATCTGGGAGGGGGTGTGACATACTAACTAAAATTACTTATAACTATAGATTGAAGTTACTGATGATGAAATCCAAGAAAAAAGATGGTGAAGGAAAGGTTAAGATTACTATATAATTTTGTGTATAGTGATAGACATAGATGGAAGTCTATCTGTGGCTATAAGTGATGTCTCTTTCTCCCAAGTTTGATCTTTTTTTTTTTTCTTTTTTTTGTAGCAAACACAGCAAAGTATTCCAACCCAGACTTGGAAACACCACTAGAGCAAGAAACACAAGAAGTTGAAACACAACAAAGTATTCCAACCCAACACTTGGAAACACTAGAGGAAGAAACACAGAAGTTGCAAACACAAGAGACACAAAAGTTACCAACACAAGAGACACTCTGGAGGTGTTGACAACTGAAGAGTTAGAGTAGTTGGCAGCACAATAGTTTGAGGAGTTGGAGGATGTTTAGCAACAAACAACAAAACAAAAGGAGGAGGTTTGACTCTTTTTCCCCTTTCATTTCAATCTATCACGCTAGATAGACAATTATAACACAAGTTACTGTAGAATATTGAAGTTTAGATTGAAGAAGTTGCAAATAACCAAAGAGAAGAAGGAAGGGAAGAAGATGAAAATGAAAATAAAAATGATGAAGAAGAAAATCGAAAAATAGAATAAAACAAAACATGCAAGAAAAAAGGTAAATCTGAACTTAGATTGAAAAGAAGTAATAAATACTAATAGAATTCTATTACTGTTTATTGTAGTATTCGATATTACTCTCTTCTAACTTCCAACTTAAAAACATTTTCTTCCTTGCAGCAACAAGAGCAAGTAGAGGAAGTTTAGGAAGATGCTAATGAAGAAGATGCTAATGAAACAACGAATGAAGACAAACAAAAAAAAAAAAAACAAATAAATGCAAAAGAAGGTAAATATCAAACTACTATATTAATTCTTTTACATTAAACAACTATTATATTATCAACATTCTTCCAATTTCATTTTAGGTTGTTCAACAAAAAGGAAAGGCTAAAAAGTTTAGACTGAATGTGGTTCTTGATACCCATATTGAAAATGAAAGGCCAAAGCGACAAAGAAAACCATCACAAAAAGCATTGGACAACAAAGTCCCACCAAAGAAAGACAAAGAGAAGAAAGTATCCCCAAAGAAGCCAACAACAAAAACCTCCTTGATGGACAATGCACCAAGCTTCGATTTAAACATCTTTCAAATTAAATCATCGCAATCTGAATCTTGA

mRNA sequence

ATGGACAGTTTATGTCACAAAAGGGGTGATGTTTACTGTCCTCACATCTCCTCTTGGGTTGAGCGCGATAATCTGGGAGGGGCAAACACAGCAAAGTATTCCAACCCAGACTTGGAAACACCACTAGAGCAAGAAACACAAGAAGTTGAAACACAACAAAGAAGAAACACAGAAGTTGCAAACACAAGAGACACAAAAGTTACCAACACAAGAGACACTCTGGAGGTTGTTCAACAAAAAGGAAAGGCTAAAAAGTTTAGACTGAATGTGGTTCTTGATACCCATATTGAAAATGAAAGGCCAAAGCGACAAAGAAAACCATCACAAAAAGCATTGGACAACAAAGTCCCACCAAAGAAAGACAAAGAGAAGAAAGTATCCCCAAAGAAGCCAACAACAAAAACCTCCTTGATGGACAATGCACCAAGCTTCGATTTAAACATCTTTCAAATTAAATCATCGCAATCTGAATCTTGA

Coding sequence (CDS)

ATGGACAGTTTATGTCACAAAAGGGGTGATGTTTACTGTCCTCACATCTCCTCTTGGGTTGAGCGCGATAATCTGGGAGGGGCAAACACAGCAAAGTATTCCAACCCAGACTTGGAAACACCACTAGAGCAAGAAACACAAGAAGTTGAAACACAACAAAGAAGAAACACAGAAGTTGCAAACACAAGAGACACAAAAGTTACCAACACAAGAGACACTCTGGAGGTTGTTCAACAAAAAGGAAAGGCTAAAAAGTTTAGACTGAATGTGGTTCTTGATACCCATATTGAAAATGAAAGGCCAAAGCGACAAAGAAAACCATCACAAAAAGCATTGGACAACAAAGTCCCACCAAAGAAAGACAAAGAGAAGAAAGTATCCCCAAAGAAGCCAACAACAAAAACCTCCTTGATGGACAATGCACCAAGCTTCGATTTAAACATCTTTCAAATTAAATCATCGCAATCTGAATCTTGA

Protein sequence

MDSLCHKRGDVYCPHISSWVERDNLGGANTAKYSNPDLETPLEQETQEVETQQRRNTEVANTRDTKVTNTRDTLEVVQQKGKAKKFRLNVVLDTHIENERPKRQRKPSQKALDNKVPPKKDKEKKVSPKKPTTKTSLMDNAPSFDLNIFQIKSSQSES
Homology
The following BLAST results are available for this feature:
BLAST of ClCG03G012220 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG03G012220 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG03G012220 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG03G012220 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G012220.1ClCG03G012220.1mRNA