ClCG03G012100 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G012100
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTATA-box-binding protein
LocationCG_Chr03: 24242066 .. 24246077 (+)
RNA-Seq ExpressionClCG03G012100
SyntenyClCG03G012100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATCCTTGTTTATTCCTCCCAGCTGGAGTATGGATATTCATTCTTCCTCCCGAGGAAGGCCAAATAGCATATTCCACGAACCAACCTTAGAACGAAATTTGGCAAGTCGAGAGATACCACGATTGGCTCTGGTTTTTCTTAGAAGAAAATATGAGTTTAAGAATGGTGTTTAAACTTTCCATGAGCCATTCCATCATCTGAGACGAAATCTTAACAATTTGACTTCTTTCTAAGTCCTCTATTGAAAATCCTGTCGTCGTCGGACCAAACACAGAAATGTTGGTTGTTAATATTGTAGCTTTTGATTTCCATAATTGATAACACGAGCTTGGTAATTATGAATGGGTGGAGGTGAAAAGACGATGATGTTGGTGAAGTGAATGTTTTGCTGATCGGAAGAGAGAAGGGGGAAGGTGTGGAGAGAGGAGAGAGGGGAGAGCATACTTACCTTTTACATGGGATGTGCAGATTAATGTTGATGGCCTAATGAGACAGGAGGGAGAAAATGCTAATTTGATTTGGGGCATAATCCTGTTCCGTATCTCTGTGAACCCATGTCATGATCATATTTTATTATATAATTTAATAATAACCTCAAAACCACACGTTATTAAGACAATATGACATTTTGATCTAAGGTCAGATTTGTATCTCACCCACATGGAGTTGTACTTAACAAAAAAAGCAAGACAGACCTCAAACCAATATTTATAATTTATTTGGTCAATCTTCTTTTCATGGACGCGTATTAAACAGGTATGTTGTTCAATTAATTCCCCTAAGAATGCATTGGAACTTGAGGAAATTTGTTTGAATTGTATTTAAGTTGAGTGAGAATTTTTGTGTCCTTAATGTGCCATAGCTATATGGATGCCTTTTTTTTTTTCCTTGTAAACTGGTTGCTGCATTTGAAAAGTATCTTGTTTTAGCTATTCAGATGTATGATGTGGTGTAGGTCTGTACGGGAGCTAAGAGTGAACAACAATCCAAATTAGCTGCAAGAAAGGTATTTACTTTCTTTCCATTGTTCTGTCTTAGTTTGTAGAGGTTGTCAAATCCTCTCTCTACACATTGGTTGTTAGAATATCAATGATAGAATCCTGGAGCTTGAGAAGGTCTACTCGATTTTATCTTAAACTGTTATCATTTGGTTCATTAAATTTTCAAAGGTCTGACTAGTTGTGTCATGCCCTGATTCAGTGTGACGTAATTTGAGTTCTGAAGCTTAAATCTTATAGATTTCATTTTATAAGTGTTCCAGAAAATAAGAGGTATGAGCTTGAGATATGGTTGTTAGGTATTAGGGGTTGAGAATAGTTGATAGTTGGAAGTAATGTGTACTTTACATCTTGTTGTAATGTACGAATATTATTTGCATATTTAAGTGTTGATGTATGAACTGAGATTAAATCGTCATAGGGGAGCCACTAAGCATGATCAATTGATGCTCAGTTTATTGATTTTCTTATTATTCTAAAAGTTGTTGGGCATCTCATTCAGCAGCACCCTTCTTTTTAATATGAAGCTTATCAAAAATATAATATGAATTCTTTATCTGATATTGTACCTTATTTCTACTTTCCAGTATGCCCGTATTATCCAAAAACTTGGTTTTCCTGCCAAGTTTAAGGTATGTGCTTCTATCCTACTCATTTGTAGGGCGCTGCAATTGCCACCAGAAAGTACTTTTATATTTCCTTTTTTGTAAAAAAAAAAATGAAAACATCTTTCAGTAAGACTGAAAGAAGACAAAAGAGAAAGGAAAAATAATATATACACATAGTTTTAATTCAAAAACTTGATTCTAGAACTAAGATTATTTAGCATATATTCTGATTCATTTTTAATCTCGTGCAGGATTTTAAGATTCAGAATATTGTTGGCTCATGTGATGTTAAGTTTCCCATAAGGCTTGAGGGTCTTGCTTATTCACACGGAGCCTTTTCAAGTGTAAGCTTAAGATCTATATCTTGATCTCTATGTGCATTCTATTGGATCGTTTCTATTACCTCATTATTAGATTTGTCAGATTCTGGAGGTCCACAGTTAGTCAAGCATTTTTCTGCTAGAAATCTCTCTTCTGAATATTTTCTTTTGGGGGCATGACTTGAATTGTTGTGCTTGACTATGATTTCTCCAAATTTTTCAAGTGATGCTGTGTTTTGGTCTTTTCTTTCATGGGGAACTAGCTCAACGATGATTATTCATGGTCAACAAGTTTGAGATGATATTTAAGTTTGTGGTGTTTTGGGTGATGTATACTAGCATTTACCCGGTGATGAATGGAATCCCGAGAGTTCATATTATTTTCAATGTTTAAAGTACTTCTTTGTAATTAACATTCACCTCCTGAGATTTAATATTATTTTCAATGTTTAAAGTACTTCATTGTAATTAACATTCACTATATATTTTATCAGGTTCAACATTTATTTTGTTGTTGAACTTCTTATTTATGTGTAACTTAACTTGATTATTAAAATCTGTCTCCATTTGTTTCAGTACGAACCAGAATTATTTCCTGGATTGATATATCGGATGAAACAACCAAAGATTGTGCTTCTCATTTTCGTCTCTGGGAAAATAGTTCTAACTGGGGCGAAGGTAAAAATTCGATTGCAATTTTTGTGCTTATTAAGGTAGATGTCTGAAATATTATTAGAATATCGAGGATATATTTGTAATTAGCCAAAAGTTTGTTAGCTCGGTGGCATGAATAGGGTGTCGGTGAAGGCATAATGGCTTACCTATTTTAGTTTGGACTTGAGTTTATTCAGTAGGGAGGTCTCCAAGTTCCTTTACTCGAATATTTTACTGGTCAATACAATTCTCTGATTTCAAAATAATGCGTAATTATATGCCATCAATTATTAAAGATTCAATTAGCAGTCAATAAGTTTAGTATGATTTATGGTTTGTTTTGACCAATCTTGAGATAACCCTTAGAATGACAGAATTACAATTACAGGATTGCACGACCTATTTGCCGTGTTTTATAGTCCTTATAGGCGCGCCTAGGCACTAGGTGCAGGTTAAGGTGAGGCACACAAAAGAAGGCGCACATTAGGCATGTTCTACAGAAGCCCTAAGGCTTAAGCCCTGGCCCTGACGCATTTTTCATTACTTAAAAAAATAATAATCATTAGAGTTTTTTGTCTATACTAATTAAAAATATATAATATTTACTAAGTCGAAATGCGATCTCCCCTGCATTTAGGTTCTTTTCCCCCTCATATTCAACTATGTTTTTTTTCTTTATTGAGTAGTGTTATACATAGATAGTGCACATCACACAAAAAGCCGTGCTTTTTTTTTTTTTTTTTTTTTGCGCCTTGCATTTAAGTCCCAAAAACTATTGCACTTTACTGTGCGAGGAGCCTTAAAAACATAGAGGATATCTGTATGGTTACTGTCAGAACAACAGTCATTTTGATCTTGAATCCTTCAGGTGAGAGAGGAGACATATACAGCTTTTGAGAACATATACCCAGTGCTTACAGAGTTCAGGAAAAACCAGCAATGGTAAGATGCTTCAACTGAAACTCCCAAGAGTTTAATATGGGTGCCTTTATAAATCTTTGTGCAATTTTTTCCTCTCCTGTATGGACTGGATTTATTATTAGCGTATATGGATTTGAGTCTGGATTTTGTGCTGGAAGAAATGAACAATCTGAACTCATTCCAGAGTACATCAAGCAAGCCTATTGCTCCTTGTTTCGTCTTAACGAACATCTGTTTGCAGATTTCTTTTTTTGTTTTTGTCGTTTTGGTATTAATAATCATCTGTTTGCAGATTTCTGGTCTCGGACTAGCCATCTGGGAAGTCGATTTTCCTTCATCCTTGGAGAAAGAACAAACCGACTGGCATACAGACACAAGGTAGCCGGAAAGAAGTGTATTTATCGAGAGATTTCTTCCAGTTTGAAGATAAATGAAAGACTTTCGGTTTTTGGCCTAAAATGGAGGGTGGTCTAGCTAGTGAATCAGCGTCTTCACTTTTAGTGTCTG

mRNA sequence

ATGCCATCCTTGTTTATTCCTCCCAGCTGGAGTATGGATATTCATTCTTCCTCCCGAGGAAGGCCAAATAGCATATTCCACGAACCAACCTTAGAACGAAATTTGGCAAGTCGAGAGATACCACGATTGGCTCTGTCCTCTATTGAAAATCCTGTCGTCGTCGGACCAAACACAGAAATTGAATGTTTTGCTGATCGGAAGAGAGAAGGGGGAAGGTGTGGAGAGAGGAGAGAGGGGAGAGCATACTTACCTTTTACATGGGATGTGCAGATTAATGTTGATGGCCTAATGAGACAGGAGGGAGAAAATGCTAATTTGATTTGGGGCATAATCCTGTTCCGTATCTCTGTCTGTACGGGAGCTAAGAGTGAACAACAATCCAAATTAGCTGCAAGAAAGTATGCCCGTATTATCCAAAAACTTGGTTTTCCTGCCAAGTTTAAGGATTTTAAGATTCAGAATATTGTTGGCTCATGTGATGTTAAGTTTCCCATAAGGCTTGAGGGTCTTGCTTATTCACACGGAGCCTTTTCAAGTTACGAACCAGAATTATTTCCTGGATTGATATATCGGATGAAACAACCAAAGATTGTGCTTCTCATTTTCGTCTCTGGGAAAATAGTTCTAACTGGGGCGAAGGTGAGAGAGGAGACATATACAGCTTTTGAGAACATATACCCAGTGCTTACAGAGTTCAGGAAAAACCAGCAATGTCTGGATTTTGTGCTGGAAGAAATGAACAATCTGAACTCATTCCAGAGTACATCAAGCAAGCCTATTGCTCCTTGTTTCATTTCTGGTCTCGGACTAGCCATCTGGGAAGTCGATTTTCCTTCATCCTTGGAGAAAGAACAAACCGACTGGCATACAGACACAAGGTAGCCGGAAAGAAGTGTATTTATCGAGAGATTTCTTCCAGTTTGAAGATAAATGAAAGACTTTCGGTTTTTGGCCTAAAATGGAGGGTGGTCTAGCTAGTGAATCAGCGTCTTCACTTTTAGTGTCTG

Coding sequence (CDS)

ATGCCATCCTTGTTTATTCCTCCCAGCTGGAGTATGGATATTCATTCTTCCTCCCGAGGAAGGCCAAATAGCATATTCCACGAACCAACCTTAGAACGAAATTTGGCAAGTCGAGAGATACCACGATTGGCTCTGTCCTCTATTGAAAATCCTGTCGTCGTCGGACCAAACACAGAAATTGAATGTTTTGCTGATCGGAAGAGAGAAGGGGGAAGGTGTGGAGAGAGGAGAGAGGGGAGAGCATACTTACCTTTTACATGGGATGTGCAGATTAATGTTGATGGCCTAATGAGACAGGAGGGAGAAAATGCTAATTTGATTTGGGGCATAATCCTGTTCCGTATCTCTGTCTGTACGGGAGCTAAGAGTGAACAACAATCCAAATTAGCTGCAAGAAAGTATGCCCGTATTATCCAAAAACTTGGTTTTCCTGCCAAGTTTAAGGATTTTAAGATTCAGAATATTGTTGGCTCATGTGATGTTAAGTTTCCCATAAGGCTTGAGGGTCTTGCTTATTCACACGGAGCCTTTTCAAGTTACGAACCAGAATTATTTCCTGGATTGATATATCGGATGAAACAACCAAAGATTGTGCTTCTCATTTTCGTCTCTGGGAAAATAGTTCTAACTGGGGCGAAGGTGAGAGAGGAGACATATACAGCTTTTGAGAACATATACCCAGTGCTTACAGAGTTCAGGAAAAACCAGCAATGTCTGGATTTTGTGCTGGAAGAAATGAACAATCTGAACTCATTCCAGAGTACATCAAGCAAGCCTATTGCTCCTTGTTTCATTTCTGGTCTCGGACTAGCCATCTGGGAAGTCGATTTTCCTTCATCCTTGGAGAAAGAACAAACCGACTGGCATACAGACACAAGGTAG

Protein sequence

MPSLFIPPSWSMDIHSSSRGRPNSIFHEPTLERNLASREIPRLALSSIENPVVVGPNTEIECFADRKREGGRCGERREGRAYLPFTWDVQINVDGLMRQEGENANLIWGIILFRISVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQCLDFVLEEMNNLNSFQSTSSKPIAPCFISGLGLAIWEVDFPSSLEKEQTDWHTDTR
Homology
[Close]
BLAST of ClCG03G012100 vs. NCBI nr
Match: KAD4179106.1 (hypothetical protein E3N88_27697 [Mikania micrantha])

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-62
Identity = 127/150 (84.67%), Postives = 134/150 (89.33%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 107 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 166

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVR+ETYTAFENIYPVLTEFRKNQ
Sbjct: 167 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 226

Query: 237 QCLDFV-------LEEMNNLNSFQSTSSKP 260
           QC+ +        L + +N   F+S + KP
Sbjct: 227 QCVVYANTHCLMCLFQQHNSQQFRSGNPKP 256

[Close]
BLAST of ClCG03G012100 vs. NCBI nr
Match: KAC9138564.1 (hypothetical protein E3N88_46307 [Mikania micrantha])

HSP 1 Score: 247.7 bits (631), Expect = 1.3e-61
Identity = 122/128 (95.31%), Postives = 125/128 (97.66%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 107 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 166

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVR+ETYTAFENIYPVLTEFRKNQ
Sbjct: 167 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 226

Query: 237 QCLDFVLE 245
           QC +  L+
Sbjct: 227 QCQEIELK 234

[Close]
BLAST of ClCG03G012100 vs. NCBI nr
Match: KAG9452033.1 (hypothetical protein H6P81_004937 [Aristolochia fimbriata])

HSP 1 Score: 247.7 bits (631), Expect = 1.3e-61
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVR+ETYTAFENIYPVLTEFRKNQ
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199

Query: 237 QCL 240
           QCL
Sbjct: 200 QCL 202

[Close]
BLAST of ClCG03G012100 vs. NCBI nr
Match: XP_024967070.1 (TATA-box-binding protein-like isoform X1 [Cynara cardunculus var. scolymus] >XP_024967071.1 TATA-box-binding protein-like isoform X1 [Cynara cardunculus var. scolymus])

HSP 1 Score: 247.3 bits (630), Expect = 1.7e-61
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 199

Query: 237 QC 239
           QC
Sbjct: 200 QC 201

[Close]
BLAST of ClCG03G012100 vs. NCBI nr
Match: KAG6590070.1 (TATA-box-binding protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 247.3 bits (630), Expect = 1.7e-61
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 199

Query: 237 QC 239
           QC
Sbjct: 200 QC 201

[Close]
BLAST of ClCG03G012100 vs. ExPASy Swiss-Prot
Match: P48511 (TATA-box-binding protein OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.4e-63
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 199

Query: 237 Q 238
           Q
Sbjct: 200 Q 200

[Close]
BLAST of ClCG03G012100 vs. ExPASy Swiss-Prot
Match: Q42808 (TATA-box-binding protein OS=Glycine max OX=3847 GN=TBP1 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 5.3e-63
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVR+ETYTAFENIYPVLTEFRKNQ
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199

Query: 237 Q 238
           Q
Sbjct: 200 Q 200

[Close]
BLAST of ClCG03G012100 vs. ExPASy Swiss-Prot
Match: P26357 (TATA-box-binding protein OS=Solanum tuberosum OX=4113 GN=TBP PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 2.0e-62
Identity = 118/121 (97.52%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAY+HGA
Sbjct: 80  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYAHGA 139

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVLTEFRKNQ
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKNQ 199

Query: 237 Q 238
           Q
Sbjct: 200 Q 200

[Close]
BLAST of ClCG03G012100 vs. ExPASy Swiss-Prot
Match: Q8W0W4 (TATA-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TBP2 PE=1 SV=2)

HSP 1 Score: 239.2 bits (609), Expect = 5.9e-62
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 83  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 142

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVR+ETYTAFENIYPVLTEFRK Q
Sbjct: 143 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKVQ 202

Query: 237 Q 238
           Q
Sbjct: 203 Q 203

[Close]
BLAST of ClCG03G012100 vs. ExPASy Swiss-Prot
Match: P50159 (TATA-box-binding protein 2 OS=Zea mays OX=4577 GN=TBP2 PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 7.7e-62
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVL+EFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLSEFRKIQ 199

Query: 237 Q 238
           Q
Sbjct: 200 Q 200

[Close]
BLAST of ClCG03G012100 vs. ExPASy TrEMBL
Match: A0A5N6MYD1 (CCHC-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_27697 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 5.5e-63
Identity = 127/150 (84.67%), Postives = 134/150 (89.33%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 107 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 166

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVR+ETYTAFENIYPVLTEFRKNQ
Sbjct: 167 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 226

Query: 237 QCLDFV-------LEEMNNLNSFQSTSSKP 260
           QC+ +        L + +N   F+S + KP
Sbjct: 227 QCVVYANTHCLMCLFQQHNSQQFRSGNPKP 256

[Close]
BLAST of ClCG03G012100 vs. ExPASy TrEMBL
Match: A0A5N6L6P9 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_46307 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 6.1e-62
Identity = 122/128 (95.31%), Postives = 125/128 (97.66%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 107 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 166

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVR+ETYTAFENIYPVLTEFRKNQ
Sbjct: 167 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 226

Query: 237 QCLDFVLE 245
           QC +  L+
Sbjct: 227 QCQEIELK 234

[Close]
BLAST of ClCG03G012100 vs. ExPASy TrEMBL
Match: A0A445FVR5 (TATA-box-binding protein isoform B OS=Glycine soja OX=3848 GN=D0Y65_049183 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.8e-61
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVR+ETYTAFENIYPVLTEFRKNQ
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199

Query: 237 QC 239
           QC
Sbjct: 200 QC 201

[Close]
BLAST of ClCG03G012100 vs. ExPASy TrEMBL
Match: A0A445FVY2 (TATA-box-binding protein isoform D OS=Glycine soja OX=3848 GN=D0Y65_049183 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.8e-61
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 70  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 129

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVR+ETYTAFENIYPVLTEFRKNQ
Sbjct: 130 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 189

Query: 237 QC 239
           QC
Sbjct: 190 QC 191

[Close]
BLAST of ClCG03G012100 vs. ExPASy TrEMBL
Match: A0A5J5CA09 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_002611 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.8e-61
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVR+ETYTAFENIYPVLTEFRKNQ
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199

Query: 237 QCLDF 242
           Q  DF
Sbjct: 200 QWYDF 204

[Close]
BLAST of ClCG03G012100 vs. TAIR 10
Match: AT1G55520.1 (TATA binding protein 2 )

HSP 1 Score: 226.1 bits (575), Expect = 3.7e-59
Identity = 112/121 (92.56%), Postives = 115/121 (95.04%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSE  SKLAARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH A
Sbjct: 80  VCTGAKSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSA 139

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TGAK+REETYTAFENIYPVL EFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREETYTAFENIYPVLREFRKVQ 199

Query: 237 Q 238
           Q
Sbjct: 200 Q 200

[Close]
BLAST of ClCG03G012100 vs. TAIR 10
Match: AT1G55520.2 (TATA binding protein 2 )

HSP 1 Score: 226.1 bits (575), Expect = 3.7e-59
Identity = 112/121 (92.56%), Postives = 115/121 (95.04%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSE  SKLAARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH A
Sbjct: 80  VCTGAKSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSA 139

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TGAK+REETYTAFENIYPVL EFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREETYTAFENIYPVLREFRKVQ 199

Query: 237 Q 238
           Q
Sbjct: 200 Q 200

[Close]
BLAST of ClCG03G012100 vs. TAIR 10
Match: AT3G13445.1 (TATA binding protein 1 )

HSP 1 Score: 222.2 bits (565), Expect = 5.3e-58
Identity = 109/121 (90.08%), Postives = 115/121 (95.04%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSE  SK+AARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH A
Sbjct: 80  VCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAA 139

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 236
           FSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TGAK+R+ETY AFENIYPVL+EFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKIQ 199

Query: 237 Q 238
           Q
Sbjct: 200 Q 200

[Close]
BLAST of ClCG03G012100 vs. TAIR 10
Match: AT3G13445.2 (TATA binding protein 1 )

HSP 1 Score: 185.3 bits (469), Expect = 7.2e-47
Identity = 91/98 (92.86%), Postives = 94/98 (95.92%), Query Frame = 0 

Query: 117 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 176
           VCTGAKSE  SK+AARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH A
Sbjct: 80  VCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAA 139

Query: 177 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKV 215
           FSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TGAKV
Sbjct: 140 FSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKV 177

The following BLAST results are available for this feature:
BLAST of ClCG03G012100 vs. NCBI nr
Match NameE-valueIdentityDescription
KAD4179106.11.1e-6284.67hypothetical protein E3N88_27697 [Mikania micrantha][more]
KAC9138564.11.3e-6195.31hypothetical protein E3N88_46307 [Mikania micrantha][more]
KAG9452033.11.3e-6199.19hypothetical protein H6P81_004937 [Aristolochia fimbriata][more]
XP_024967070.11.7e-61100.00TATA-box-binding protein-like isoform X1 [Cynara cardunculus var. scolymus] >XP_... [more]
KAG6590070.11.7e-61100.00TATA-box-binding protein, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of ClCG03G012100 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P485112.4e-63100.00TATA-box-binding protein OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1[more]
Q428085.3e-6399.17TATA-box-binding protein OS=Glycine max OX=3847 GN=TBP1 PE=2 SV=1[more]
P263572.0e-6297.52TATA-box-binding protein OS=Solanum tuberosum OX=4113 GN=TBP PE=2 SV=1[more]
Q8W0W45.9e-6298.35TATA-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TBP2 PE=1 SV=... [more]
P501597.7e-6298.35TATA-box-binding protein 2 OS=Zea mays OX=4577 GN=TBP2 PE=2 SV=1[more]
BLAST of ClCG03G012100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5N6MYD15.5e-6384.67CCHC-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_2769... [more]
A0A5N6L6P96.1e-6295.31Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_46307 PE=3 SV=1[more]
A0A445FVR51.8e-6199.18TATA-box-binding protein isoform B OS=Glycine soja OX=3848 GN=D0Y65_049183 PE=3 ... [more]
A0A445FVY21.8e-6199.18TATA-box-binding protein isoform D OS=Glycine soja OX=3848 GN=D0Y65_049183 PE=3 ... [more]
A0A5J5CA091.8e-6197.60Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_002611 PE=3 SV=1[more]
BLAST of ClCG03G012100 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G55520.13.7e-5992.56TATA binding protein 2 [more]
AT1G55520.23.7e-5992.56TATA binding protein 2 [more]
AT3G13445.15.3e-5890.08TATA binding protein 1 [more]
AT3G13445.27.2e-4792.86TATA binding protein 1 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000814TATA-box binding proteinPRINTSPR00686TIFACTORIIDcoord: 176..191
score: 86.3
coord: 195..211
score: 85.86
coord: 152..168
score: 82.48
coord: 105..123
score: 38.97
IPR000814TATA-box binding proteinPFAMPF00352TBPcoord: 149..231
e-value: 3.6E-32
score: 110.1
IPR000814TATA-box binding proteinPANTHERPTHR10126TATA-BOX BINDING PROTEINcoord: 117..237
IPR012295TBP domain superfamilyGENE3D3.30.310.10coord: 149..236
e-value: 5.6E-38
score: 130.6
IPR012295TBP domain superfamilyGENE3D3.30.310.10coord: 111..148
e-value: 2.0E-13
score: 51.7
NoneNo IPR availablePANTHERPTHR10126:SF48TATA-BOX-BINDING PROTEIN 1coord: 117..237
NoneNo IPR availableSUPERFAMILY55945TATA-box binding protein-likecoord: 117..152
NoneNo IPR availableSUPERFAMILY55945TATA-box binding protein-likecoord: 149..241
IPR030491TATA-box binding protein, conserved sitePROSITEPS00351TFIIDcoord: 180..229
IPR033710TATA-box binding protein, eukaryoticCDDcd04516TBP_eukaryotescoord: 117..232
e-value: 6.64717E-84
score: 247.903

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G012100.1ClCG03G012100.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding