ClCG03G011820 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G011820
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Secretion protein HlyD family protein
Location	CG_Chr03: 23603651 .. 23604001 (-)
RNA-Seq Expression	ClCG03G011820
Synteny	ClCG03G011820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGACCCGAGTTCCTTTGGAAGATTTGACTCGTGCTCAAACTCCAATTTCTCGAGCTAATCGTCTTCTAACTGAAACCATGGTAGAGCTGGAATCATCTAATGCTAACAATGCTCGAATTCAAGCCAAACTTGACAAAATTGAAGCCCCCCTTTGTGATGCAGCTTACTTGGAAGAAAAATTTAAGGAAACTAAATCATTCACTAGGCTTCAAGATTCTGTTATGGAATATGGAGTTCAATGGTGTGTGAAGAGAGGCTCTCGTCAGGAGCCCCTAGTGGATCTTCAATTCCTCTCTAGTAACTTTAAGAAGCTTCATCAAGATCGATCCTTATATCTTTGCTTCTGA

mRNA sequence

ATGGTGACCCGAGTTCCTTTGGAAGATTTGACTCGTGCTCAAACTCCAATTTCTCGAGCTAATCGTCTTCTAACTGAAACCATGGTAGAGCTGGAATCATCTAATGCTAACAATGCTCGAATTCAAGCCAAACTTGACAAAATTGAAGCCCCCCTTTGTGATGCAGCTTACTTGGAAGAAAAATTTAAGGAAACTAAATCATTCACTAGGCTTCAAGATTCTGTTATGGAATATGGAGTTCAATGGTGTGTGAAGAGAGGCTCTCGTCAGGAGCCCCTAGTGGATCTTCAATTCCTCTCTAGTAACTTTAAGAAGCTTCATCAAGATCGATCCTTATATCTTTGCTTCTGA

Coding sequence (CDS)

ATGGTGACCCGAGTTCCTTTGGAAGATTTGACTCGTGCTCAAACTCCAATTTCTCGAGCTAATCGTCTTCTAACTGAAACCATGGTAGAGCTGGAATCATCTAATGCTAACAATGCTCGAATTCAAGCCAAACTTGACAAAATTGAAGCCCCCCTTTGTGATGCAGCTTACTTGGAAGAAAAATTTAAGGAAACTAAATCATTCACTAGGCTTCAAGATTCTGTTATGGAATATGGAGTTCAATGGTGTGTGAAGAGAGGCTCTCGTCAGGAGCCCCTAGTGGATCTTCAATTCCTCTCTAGTAACTTTAAGAAGCTTCATCAAGATCGATCCTTATATCTTTGCTTCTGA

Protein sequence

MVTRVPLEDLTRAQTPISRANRLLTETMVELESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQDSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFKKLHQDRSLYLCF

Homology

[Close]

BLAST of ClCG03G011820 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 3.5e-07
Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 0


Query: 6    PLEDLTRAQTPISRANRLLTETMVELE----SSNANNARIQAKLDKIEAPLCDAAYLEEK 65
            P E L +A + +++AN LL  T  +LE     S    A +Q +LD++ A L ++ +L  +
Sbjct: 1139 PREKLEQAISSLNQANSLLEGTQRKLEMEKRKSRDELANLQRRLDEVNARLFNSEFLARE 1198

Query: 66   FKETKSFTRLQDSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
            FK+T+ +  LQ+S ME GV W +++ S Q P +D+ FL   F+
Sbjct: 1199 FKKTQEYVDLQNSAMECGVFWFLRQVSTQHPDIDISFLPERFR 1241

[Close]

BLAST of ClCG03G011820 vs. NCBI nr
Match: XP_031737089.1 (uncharacterized protein LOC105435920 isoform X5 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 225 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQ 284

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 285 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 316

[Close]

BLAST of ClCG03G011820 vs. NCBI nr
Match: XP_031737075.1 (uncharacterized protein LOC105435920 isoform X1 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 256 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQ 315

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 316 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 347

[Close]

BLAST of ClCG03G011820 vs. NCBI nr
Match: XP_031737083.1 (uncharacterized protein LOC105435920 isoform X3 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 242 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQ 301

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 302 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 333

[Close]

BLAST of ClCG03G011820 vs. NCBI nr
Match: KGN66039.2 (hypothetical protein Csa_020117 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 241 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQ 300

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 301 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 332

[Close]

BLAST of ClCG03G011820 vs. ExPASy TrEMBL
Match: A0A6J1DSS1 (uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023586 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 0


Query: 6    PLEDLTRAQTPISRANRLLTETMVELE----SSNANNARIQAKLDKIEAPLCDAAYLEEK 65
            P E L +A + +++AN LL  T  +LE     S    A +Q +LD++ A L ++ +L  +
Sbjct: 1139 PREKLEQAISSLNQANSLLEGTQRKLEMEKRKSRDELANLQRRLDEVNARLFNSEFLARE 1198

Query: 66   FKETKSFTRLQDSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
            FK+T+ +  LQ+S ME GV W +++ S Q P +D+ FL   F+
Sbjct: 1199 FKKTQEYVDLQNSAMECGVFWFLRQVSTQHPDIDISFLPERFR 1241

[Close]

BLAST of ClCG03G011820 vs. ExPASy TrEMBL
Match: A0A0A0LXX2 (Secretion protein HlyD family protein OS=Cucumis sativus OX=3659 GN=Csa_1G495250 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.8e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 18  LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQ 77

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 78  NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 109

[Close]

BLAST of ClCG03G011820 vs. ExPASy TrEMBL
Match: A0A5A7SSF9 (Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00750 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.0e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 237 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQ 296

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 297 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 328

[Close]

BLAST of ClCG03G011820 vs. ExPASy TrEMBL
Match: A0A5D3BQ22 (Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00610 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.0e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 186 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQ 245

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 246 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 277

[Close]

BLAST of ClCG03G011820 vs. ExPASy TrEMBL
Match: A0A1S3C5B2 (uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.0e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 247 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQ 306

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 307 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 338

The following BLAST results are available for this feature:

BLAST of ClCG03G011820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156747.1	3.5e-07	35.92	uncharacterized protein LOC111023586 [Momordica charantia]	[more]
XP_031737089.1	7.9e-07	39.13	uncharacterized protein LOC105435920 isoform X5 [Cucumis sativus]	[more]
XP_031737075.1	7.9e-07	39.13	uncharacterized protein LOC105435920 isoform X1 [Cucumis sativus]	[more]
XP_031737083.1	7.9e-07	39.13	uncharacterized protein LOC105435920 isoform X3 [Cucumis sativus]	[more]
KGN66039.2	7.9e-07	39.13	hypothetical protein Csa_020117 [Cucumis sativus]	[more]

BLAST of ClCG03G011820 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G011820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSS1	1.7e-07	35.92	uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A0A0LXX2	3.8e-07	39.13	Secretion protein HlyD family protein OS=Cucumis sativus OX=3659 GN=Csa_1G495250...	[more]
A0A5A7SSF9	5.0e-07	39.13	Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BQ22	5.0e-07	39.13	Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3C5B2	5.0e-07	39.13	uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of ClCG03G011820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G011820.1	ClCG03G011820.1	mRNA