ClCG03G011680 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G011680
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRNase H domain-containing protein
LocationCG_Chr03: 23022848 .. 23023252 (+)
RNA-Seq ExpressionClCG03G011680
SyntenyClCG03G011680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATTTGTCCGTCTACATTCACTGCTCTTACCAGTTGGCAACCACCTGAGGAGATGTTTTGGAAGCTAAACACTGATGTTGCTTGGAGCTCTGTTTCTAAGGCATGCGGAAGGCCTAGGGTGGGTGCTTGGGACCACTAGGGTCATGTTCGTCTTGTGGGATCAAAGTTCATTCCTAGATGTGGTGAGGTTAAGACACTTGAAGCAATGACAATTTGTCTTGGGCTTAAGAGGATTTCTCAAATTCTTAATTCAAACCTTTTGGTTGAATCTGATGGCTTAGAGGTGACCAAATTGCTAGACAACATTGTGGATGATATCACAGAGGTCTCTTACTTTATTGACGAGGCAAAGATGCAGGGAGGTGATTTAGGTGTTATCTCTTTCTCCCATGTTCGTTGA

mRNA sequence

ATGGTGATTTGTCCGTCTACATTCACTGCTCTTACCAGTTGGCAACCACCTGAGGAGATGTTTTGGAAGCTAAACACTGATGTTGCTTGGAGCTCTGTTTCTAAGGCATGCGGAAGGCCTAGGGGTCATGTTCGTCTTGTGGGATCAAAGTTCATTCCTAGATGTGGTGAGGTTAAGACACTTGAAGCAATGACAATTTGTCTTGGGCTTAAGAGGATTTCTCAAATTCTTAATTCAAACCTTTTGGTTGAATCTGATGGCTTAGAGGTGACCAAATTGCTAGACAACATTGTGGATGATATCACAGAGGTCTCTTACTTTATTGACGAGGCAAAGATGCAGGGAGGTGATTTAGGTGTTATCTCTTTCTCCCATGTTCGTTGA

Coding sequence (CDS)

ATGGTGATTTGTCCGTCTACATTCACTGCTCTTACCAGTTGGCAACCACCTGAGGAGATGTTTTGGAAGCTAAACACTGATGTTGCTTGGAGCTCTGTTTCTAAGGCATGCGGAAGGCCTAGGGGTCATGTTCGTCTTGTGGGATCAAAGTTCATTCCTAGATGTGGTGAGGTTAAGACACTTGAAGCAATGACAATTTGTCTTGGGCTTAAGAGGATTTCTCAAATTCTTAATTCAAACCTTTTGGTTGAATCTGATGGCTTAGAGGTGACCAAATTGCTAGACAACATTGTGGATGATATCACAGAGGTCTCTTACTTTATTGACGAGGCAAAGATGCAGGGAGGTGATTTAGGTGTTATCTCTTTCTCCCATGTTCGTTGA

Protein sequence

MVICPSTFTALTSWQPPEEMFWKLNTDVAWSSVSKACGRPRGHVRLVGSKFIPRCGEVKTLEAMTICLGLKRISQILNSNLLVESDGLEVTKLLDNIVDDITEVSYFIDEAKMQGGDLGVISFSHVR
Homology
BLAST of ClCG03G011680 vs. NCBI nr
Match: XP_038886170.1 (uncharacterized protein LOC120076417 [Benincasa hispida])

HSP 1 Score: 108.6 bits (270), Expect = 4.0e-20
Identity = 61/130 (46.92%), Postives = 81/130 (62.31%), Query Frame = 0

Query: 5   PSTFTALTSWQPPEEMFWKLNTDVAWSSVSKACG------RPRGHVRLVGSKFIPRCGEV 64
           P     L  W P +  +WKLN D +W+S   ACG           V + G KF+ RC +V
Sbjct: 60  PIQAPTLVGWHPSKPFYWKLNMDASWNSKIDACGLGWVFLDHLYRVCMAGLKFVLRCQKV 119

Query: 65  KTLEAMTICLGLKRISQILNSNLLVESDGL-EVTKLLDNIVDDITEVSYFIDEAKMQGGD 124
             LEA+ IC GL+ +S I  SN++VESD L EV  LL++ V D++EVS+  +EAK +GG+
Sbjct: 120 NILEAIAICFGLEILSSIDISNIMVESDCLEEVINLLNDDVVDLSEVSFCSEEAKDRGGN 179

Query: 125 LGVISFSHVR 128
           LGVISFSHVR
Sbjct: 180 LGVISFSHVR 189

BLAST of ClCG03G011680 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-06
Identity = 37/119 (31.09%), Postives = 55/119 (46.22%), Query Frame = 0

Query: 14  WQPPEEMFWKLNTDVAWSSVSKACG------RPRGHVRLVGSKFIPRCGEVKTLEAMTIC 73
           W+PP    WKLNT+ AW + +   G        +G V     + I     +  LE M IC
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 74  LGLKRISQILNSNLLVESDGLEVTKLLDNIVDDITEVSYFIDEAKMQGGDLGVISFSHV 127
            GL+ I Q     + +ESD LE   LL     D TE+ + ++E      D+ ++S  H+
Sbjct: 139 EGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHI 197

BLAST of ClCG03G011680 vs. NCBI nr
Match: XP_022148737.1 (uncharacterized protein LOC111017329 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-06
Identity = 35/124 (28.23%), Postives = 61/124 (49.19%), Query Frame = 0

Query: 10  ALTSWQPPEEMFWKLNTDVAWSSVSKACG------RPRGHVRLVGSKFIPRCGEVKTLEA 69
           +LT    P+  FWKLNTD AW +     G        +  ++  G + I    ++  LE 
Sbjct: 2   SLTQHLSPDN-FWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLEL 61

Query: 70  MTICLGLKRISQILNSNLLVESDGLEVTKLLDNIVDDITEVSYFIDEAKMQGGDLGVISF 128
           M I LG++ +    + +L++ES+ LE   L+  I  ++TE+ + + + K  G    +  F
Sbjct: 62  MAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKNFGERARLKRF 121

BLAST of ClCG03G011680 vs. NCBI nr
Match: XP_006491472.1 (uncharacterized protein LOC102626455 [Citrus sinensis])

HSP 1 Score: 58.2 bits (139), Expect = 6.2e-05
Identity = 37/119 (31.09%), Postives = 58/119 (48.74%), Query Frame = 0

Query: 14   WQPPEEMFWKLNTDVAWSSVSKACG------RPRGHVRLVGSKFIPRCGEVKTLEAMTIC 73
            W+PP +   KLN D A S+  +  G         G +  VG K       V   EA  I 
Sbjct: 1293 WKPPSQNVLKLNVDAAVSTKDQKVGLGAIVRDAEGKILAVGIKQAQFRERVSLAEAEAIH 1352

Query: 74   LGLKRISQILNSNLLVESDGLEVTKLLDNIVDDITEVSYFIDEAKMQGGDLGVISFSHV 127
             GL+  +QI +S+L+VESD  EV +LL+N     TE+ + + + + +  +   + FS +
Sbjct: 1353 WGLQVANQISSSSLIVESDCKEVVELLNNTKGSRTEIHWILSDVRRESKEFKQVQFSFI 1411

BLAST of ClCG03G011680 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 6.8e-04
Identity = 34/95 (35.79%), Postives = 47/95 (49.47%), Query Frame = 0

Query: 14  WQPPEEMFWKLNTDVAWSSVSKACG------RPRGHVRLVGSKFIPRCGEVKTLEAMTIC 73
           W  P    WKLNTD +WS   +  G        RG + L G+  I    E+  LE MTI 
Sbjct: 105 WSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTII 164

Query: 74  LGLKRISQILNSNLLVESDGLEVTKLLDNIVDDIT 103
            GL+ I+    S + +ESD +EV +L+     D+T
Sbjct: 165 RGLQFINMQSRSPIYLESDSVEVIRLMKKEDVDLT 199

BLAST of ClCG03G011680 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.3e-07
Identity = 37/119 (31.09%), Postives = 55/119 (46.22%), Query Frame = 0

Query: 14  WQPPEEMFWKLNTDVAWSSVSKACG------RPRGHVRLVGSKFIPRCGEVKTLEAMTIC 73
           W+PP    WKLNT+ AW + +   G        +G V     + I     +  LE M IC
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 74  LGLKRISQILNSNLLVESDGLEVTKLLDNIVDDITEVSYFIDEAKMQGGDLGVISFSHV 127
            GL+ I Q     + +ESD LE   LL     D TE+ + ++E      D+ ++S  H+
Sbjct: 139 EGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHI 197

BLAST of ClCG03G011680 vs. ExPASy TrEMBL
Match: A0A6J1D5W1 (uncharacterized protein LOC111017329 OS=Momordica charantia OX=3673 GN=LOC111017329 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.5e-06
Identity = 35/124 (28.23%), Postives = 61/124 (49.19%), Query Frame = 0

Query: 10  ALTSWQPPEEMFWKLNTDVAWSSVSKACG------RPRGHVRLVGSKFIPRCGEVKTLEA 69
           +LT    P+  FWKLNTD AW +     G        +  ++  G + I    ++  LE 
Sbjct: 2   SLTQHLSPDN-FWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLEL 61

Query: 70  MTICLGLKRISQILNSNLLVESDGLEVTKLLDNIVDDITEVSYFIDEAKMQGGDLGVISF 128
           M I LG++ +    + +L++ES+ LE   L+  I  ++TE+ + + + K  G    +  F
Sbjct: 62  MAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKNFGERARLKRF 121

BLAST of ClCG03G011680 vs. ExPASy TrEMBL
Match: A0A5B7BU49 (RNase H domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_041820 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-04
Identity = 36/121 (29.75%), Postives = 57/121 (47.11%), Query Frame = 0

Query: 14  WQPPEEMFWKLNTDVAWSSVSKACGRPRGHVR-----LVG--SKFIPRCGEVKTLEAMTI 73
           W PP E  +KLN   +W  + ++CG   G +R     ++G  +K I  C  +   EA+ I
Sbjct: 52  WSPPREGIFKLNVHASW-VLGESCGGIGGVIRDWKGEVIGGFAKQIRTCSRIDFAEALAI 111

Query: 74  CLGLKRISQILNSNLLVESDGLEVTKLLDNIVDDITEVSYFIDEAKMQGGDLGVISFSHV 128
             GL     +   +L VE D L V   +++ V+D++E+ +  D  K          F HV
Sbjct: 112 LHGLMFAKDVGLQDLSVEGDCLSVLIAIESSVEDLSELGHVFDHIKQCRDGFHSCDFGHV 171

BLAST of ClCG03G011680 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.3e-04
Identity = 34/95 (35.79%), Postives = 47/95 (49.47%), Query Frame = 0

Query: 14  WQPPEEMFWKLNTDVAWSSVSKACG------RPRGHVRLVGSKFIPRCGEVKTLEAMTIC 73
           W  P    WKLNTD +WS   +  G        RG + L G+  I    E+  LE MTI 
Sbjct: 105 WSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTII 164

Query: 74  LGLKRISQILNSNLLVESDGLEVTKLLDNIVDDIT 103
            GL+ I+    S + +ESD +EV +L+     D+T
Sbjct: 165 RGLQFINMQSRSPIYLESDSVEVIRLMKKEDVDLT 199

BLAST of ClCG03G011680 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.4e-04
Identity = 32/87 (36.78%), Postives = 41/87 (47.13%), Query Frame = 0

Query: 14  WQPPEEMFWKLNTDVAWSSVSKACG------RPRGHVRLVGSKFIPRCGEVKTLEAMTIC 73
           W+PP    WKLNTD AW + +   G        +G V   G + I     +  LE M IC
Sbjct: 255 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAIC 314

Query: 74  LGLKRISQILNSNLLVESDGLEVTKLL 95
            GL+ I Q     + +ESD LE   LL
Sbjct: 315 EGLRAIRQEHCRPIHLESDSLEAIHLL 341

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038886170.14.0e-2046.92uncharacterized protein LOC120076417 [Benincasa hispida][more]
XP_022143535.11.9e-0631.09uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_022148737.17.3e-0628.23uncharacterized protein LOC111017329 [Momordica charantia][more]
XP_006491472.16.2e-0531.09uncharacterized protein LOC102626455 [Citrus sinensis][more]
XP_022143317.16.8e-0435.79uncharacterized protein LOC111013216 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CP269.3e-0731.09uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1D5W13.5e-0628.23uncharacterized protein LOC111017329 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A5B7BU491.5e-0429.75RNase H domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=... [more]
A0A6J1CQG03.3e-0435.79uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DL647.4e-0436.78uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G011680.1ClCG03G011680.1mRNA