ClCG03G011670 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G011670
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Thioredoxin
Location	CG_Chr03: 23014754 .. 23017318 (-)
RNA-Seq Expression	ClCG03G011670
Synteny	ClCG03G011670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTCTCTCTCTCTCTCTTCCATGGCTTTGCATCTCTCTCTCTCTCCGCCATCCATCAGATCGTCGCCGTCGTTTCCCTGCAGCGGAAGGCAGTCGATCGCTGCACTTTCCGACTCAAAGAGTGGCTGCTTCAGTTCGAAGAGCTTGAGTGTCACTAGTAGCAGGAGCATTGGTGTTTCCGGTGGAAATCGATCCTTTAAGGTCAATTCAAGCTTGGAGACTGCCGGCGCCACTGTTGGCCAAGTCACCGAGGTCAACAAGGACACTTTCTGGCCCATTGTCAATGCCGCCGGTGATAAAACCGTTGTGCTCGATATGTACACCCAATGGTTTGTGTTTCTGTGTCTCCGTTTGTCTTTGCTTCTTAATTTTGTGACATCTTTAGGTTACTACATGAGATTGTTCTGAAATATGGATGCGGATATGAATGTTCGTATATTTGTAGGTTATTTCTGGTTTACCGACTTAATTACAAAAACTAGTTGAGCTAGGCGATCCTTAGAGTAGAGTGTAGATCTCGTGGTTTAAGAAATTGAAAGGAATCTTTGGTTTTAATTAGGCGTTTGTTTGTCAAATGATTATGAAATTTATAAAAGTAATCCCTGCAAGTTGATGACACTGTATTTTTTTAATATTGAGTTTGACTTTAATTAAAAAACTATCAGAGGAAGACAGTTTGTTTTCTTCTTCTTCTTCTTCTTTTAAATAATAATTAGTACTTGAAAACTGGGTTTAGTTTGATGTACAGCATTTTGATGTCACATCTCGGGCTGGACTAACTCACGCTTAGTAGCTGAAATTTCTGGGACAATATCAGGAAAAATTGTTTGAGGATGACAGAACTATGCGGTTCTCACATTGAATAATTTTTTCTAATATATCGTAGTTTTCGAAACAATATATAGTTGAGACATCTGCTAAATAAGTTCAAGGCAATTCGATAATGGGTATTCTAGCTACTATTTAGTCAAATTATTTTCGTACTTGGAATCAAGTCTATTTAAACTTCTTTTTCTAGTTCAACAAGTGGAGAAATTATTCAATTAAATTGCAATGTGGATGATAGCTTTTCACCGTTGGATGTAGAACTCAGTTGAATAATTTTGACAACAACTGGGGTTGGGGGATTCCGTCCTGTGGTCTCTTGATCCATGGCATATGCCGTTGAATGATGGTTAAGCTTGACAAGTCTATTTAAACTCATATCAAGCAATACAAAGCTATTTAATTGCTTGTTTTGTTTTCACTAATTTTTACATAGTTTTAGTGTAATGTTCTCTATTTTAGGGTATTTTGCTTCATCGGGCTGTAGCCAATTGGCGATGGTCCCTTTCTAATGGTGATTTGGTTGCTGATTAAGTCTGAAGTAGTTAATTGATGTGGGAGTTTTAGGAAAGAAAATTTGAAAGAATGAGAAACTGGTAAGCTAGAAGCACAAGACAACAGCTTGTTTATGATAGATATAACATATCTTACAAAAAAAACAAAACTAGATATATCATATAAGAAAAAGAAAAAAAAAATCGATTAACAAGCTTCATACCTCGACTTGGATACAGAATAAACTTTTGAATCATATAATGTAACATAGCGTAACTGAAATGTGCTTTGCCTCTATGTTGTGACCTTTTGGATCTTTCTTTTCTTTCCTTTAGCTTTAATTCCATAATACGTAAGTTTACTCACTAAAAAAGAAACCCTTTGCCTTTGACGGCCTTGATTTTCTGGCAGAGTTTTTACTTTTCCCTTATTGCTTCTTGTAATAACCTGACCCTCATGGCTGTGGTGATTAATTTTTGTTAGAAAGAAAACTTTTTCTTGTTTTGCTGTGCAATTTCAGACTCCTTGTGACATTAATCATTTGTGAACATTTTAGATTCATTATTTATTGTCTCTGTTTTTGGACTCCCAAGCTTAATATCTTAATGTTCCTTTATTCATCCTTACATGGTACCACTAAAGGTGTGGACCATGCAAAGTGATGGCCCCCAAATTTCAAGAATTGTCTGAGAAATATCTTGACGTTGTCTTTCTAAAGCTTGACTGCAACCAAGACAATAAGGTTCTTTTCATGATCCCTACTTTCTTGCTTGAACTTAGGAATGTATTTCCATAGTTCATATAGCAGCAGATCATATAAGAAAACTTGAATTCTCTTTATTTGACAGCCATTGGCAAAGGAACTTGGGATAAAAGTTGTGCCAACTTTCAAAATTCTAAAGGATAGCAAGGTTGTTAAAGAAGTAACTGGGGCAAAGTTTGATGATTTGGTTCATGCCATCGATGCTGTAAGATCCAGCTGAAAACTCTCCTCTCTTCTCTTCTTTGTAAATTCAAATAATATGATGCAAGGAAGAGCATCCAGGACAGTTATTTATTTTACTCTATTAATTTAATGATTTTGTGTACTGTTAAGTTTTAAGGAAGAAGCTGTTCAATATTCTTCTTGCTAAGATAGTGGGAAATGATTCTGTATATAGATGTTTGAGACATGGACATTTGAATATGGACAATGAACAGTTCCTACGTATTCCACAAATTATTTTGCTATAAACATTTGATG

mRNA sequence

CTCTCTCTCTCTCTCTCTCTTCCATGGCTTTGCATCTCTCTCTCTCTCCGCCATCCATCAGATCGTCGCCGTCGTTTCCCTGCAGCGGAAGGCAGTCGATCGCTGCACTTTCCGACTCAAAGAGTGGCTGCTTCAGTTCGAAGAGCTTGAGTGTCACTAGTAGCAGGAGCATTGGTGTTTCCGGTGGAAATCGATCCTTTAAGGTCAATTCAAGCTTGGAGACTGCCGGCGCCACTGTTGGCCAAGTCACCGAGGTCAACAAGGACACTTTCTGGCCCATTGTCAATGCCGCCGGTGATAAAACCGTTGTGCTCGATATGTACACCCAATGGTGTGGACCATGCAAAGTGATGGCCCCCAAATTTCAAGAATTGTCTGAGAAATATCTTGACGTTGTCTTTCTAAAGCTTGACTGCAACCAAGACAATAAGCCATTGGCAAAGGAACTTGGGATAAAAGTTGTGCCAACTTTCAAAATTCTAAAGGATAGCAAGGTTGTTAAAGAAGTAACTGGGGCAAAGTTTGATGATTTGGTTCATGCCATCGATGCTGTAAGATCCAGCTGAAAACTCTCCTCTCTTCTCTTCTTTGTAAATTCAAATAATATGATGCAAGGAAGAGCATCCAGGACAGTTATTTATTTTACTCTATTAATTTAATGATTTTGTGTACTGTTAAGTTTTAAGGAAGAAGCTGTTCAATATTCTTCTTGCTAAGATAGTGGGAAATGATTCTGTATATAGATGTTTGAGACATGGACATTTGAATATGGACAATGAACAGTTCCTACGTATTCCACAAATTATTTTGCTATAAACATTTGATG

Coding sequence (CDS)

ATGGCTTTGCATCTCTCTCTCTCTCCGCCATCCATCAGATCGTCGCCGTCGTTTCCCTGCAGCGGAAGGCAGTCGATCGCTGCACTTTCCGACTCAAAGAGTGGCTGCTTCAGTTCGAAGAGCTTGAGTGTCACTAGTAGCAGGAGCATTGGTGTTTCCGGTGGAAATCGATCCTTTAAGGTCAATTCAAGCTTGGAGACTGCCGGCGCCACTGTTGGCCAAGTCACCGAGGTCAACAAGGACACTTTCTGGCCCATTGTCAATGCCGCCGGTGATAAAACCGTTGTGCTCGATATGTACACCCAATGGTGTGGACCATGCAAAGTGATGGCCCCCAAATTTCAAGAATTGTCTGAGAAATATCTTGACGTTGTCTTTCTAAAGCTTGACTGCAACCAAGACAATAAGCCATTGGCAAAGGAACTTGGGATAAAAGTTGTGCCAACTTTCAAAATTCTAAAGGATAGCAAGGTTGTTAAAGAAGTAACTGGGGCAAAGTTTGATGATTTGGTTCATGCCATCGATGCTGTAAGATCCAGCTGA

Protein sequence

MALHLSLSPPSIRSSPSFPCSGRQSIAALSDSKSGCFSSKSLSVTSSRSIGVSGGNRSFKVNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVHAIDAVRSS

Homology

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BLAST of ClCG03G011670 vs. NCBI nr
Match: XP_038878300.1 (thioredoxin F-type, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 173/180 (96.11%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 1   MALHLSLSPPSIRSSPSFPCSGRQSIAALSDSKSGCFSSKSLSVTSSRSIGVSGGNRSFK 60
           MALHLSLSPPS+RSSPSFPCSGRQSIAALSDSKSGCFSSKSLS+TSSRSIGVS GNRSFK
Sbjct: 58  MALHLSLSPPSVRSSPSFPCSGRQSIAALSDSKSGCFSSKSLSITSSRSIGVSSGNRSFK 117

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSLE AGATVG+VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK
Sbjct: 118 VNSSLEIAGATVGKVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 177

Query: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVHAIDAVRSS 180
           YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKD+KVVKEVTGAKFDDLVHAID VRSS
Sbjct: 178 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDNKVVKEVTGAKFDDLVHAIDTVRSS 237

[Close]

BLAST of ClCG03G011670 vs. NCBI nr
Match: XP_008443649.1 (PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis melo])

HSP 1 Score: 335.5 bits (859), Expect = 2.8e-88
Identity = 170/180 (94.44%), Postives = 175/180 (97.22%), Query Frame = 0


Query: 1   MALHLSLSPPSIRSSPSFPCSGRQSIAALSDSKSGCFSSKSLSVTSSRSIGVSGGNRSFK 60
           MALH SLSPPS+RSSPSFPCSGRQ I ALSDSKSGCFSS+SLSV+SSRSIGVSGGNRSFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIPALSDSKSGCFSSRSLSVSSSRSIGVSGGNRSFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSLETAGATVG+VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 61  VNSSLETAGATVGKVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVHAIDAVRSS 180
           YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKD KVVKEVTGAKFDDLVHAID VRSS
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDTVRSS 180

[Close]

BLAST of ClCG03G011670 vs. NCBI nr
Match: XP_022157062.1 (thioredoxin F-type, chloroplastic-like [Momordica charantia])

HSP 1 Score: 329.3 bits (843), Expect = 2.0e-86
Identity = 167/180 (92.78%), Postives = 176/180 (97.78%), Query Frame = 0


Query: 1   MALHLSLSPPSIRSSPSFPCSGRQSIAALSDSKSGCFSSKSLSVTSSRSIGVSGGNRSFK 60
           MAL LSLSPPSIRSSPS PC+G+Q IAA+SDSKS CFSS+SLSVTSSRSIG+SGGNR+FK
Sbjct: 1   MALRLSLSPPSIRSSPSLPCNGKQPIAAVSDSKSTCFSSRSLSVTSSRSIGISGGNRTFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPC+VMAPKFQELSEK
Sbjct: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCRVMAPKFQELSEK 120

Query: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVHAIDAVRSS 180
           YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKD+KVVKEVTGAKFDDLVHAI+AVRSS
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDNKVVKEVTGAKFDDLVHAIEAVRSS 180

[Close]

BLAST of ClCG03G011670 vs. NCBI nr
Match: XP_004139092.1 (thioredoxin F-type, chloroplastic [Cucumis sativus] >KGN66631.1 hypothetical protein Csa_007307 [Cucumis sativus])

HSP 1 Score: 325.9 bits (834), Expect = 2.2e-85
Identity = 166/180 (92.22%), Postives = 173/180 (96.11%), Query Frame = 0


Query: 1   MALHLSLSPPSIRSSPSFPCSGRQSIAALSDSKSGCFSSKSLSVTSSRSIGVSGGNRSFK 60
           MALH SLSPPS+RSSPSFPCSGRQ IA LS+SKSGCFSS+SLS++SSRSIGVSG N SFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVHAIDAVRSS 180
           YLDVVFLKLDCN DNKPLAKELGIKVVPTFKILKD KVVKEVTGAKFD+LVHAIDAVRSS
Sbjct: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180

[Close]

BLAST of ClCG03G011670 vs. NCBI nr
Match: XP_022988428.1 (thioredoxin F-type, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 325.1 bits (832), Expect = 3.8e-85
Identity = 168/180 (93.33%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MALHLSLSPPSIRSSPSFPCSGRQSIAALSDSKSGCFSSKSLSVTSSRSIGVSGGNRSFK 60
           MAL +SLSPPSIRSSPS PCSGRQ IAALSD+KSGCFSSK LSVTSSRSIGVS GNRSFK
Sbjct: 1   MALRISLSPPSIRSSPSLPCSGRQPIAALSDAKSGCFSSKRLSVTSSRSIGVSSGNRSFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           +NSSLETAGATVG VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK
Sbjct: 61  INSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120

Query: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVHAIDAVRSS 180
           YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKD KVVK VTGAKFDDLV AIDAVRSS
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAIDAVRSS 180

[Close]

BLAST of ClCG03G011670 vs. ExPASy Swiss-Prot
Match: P29450 (Thioredoxin F-type, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 8.1e-54
Identity = 122/186 (65.59%), Postives = 141/186 (75.81%), Query Frame = 0


Query: 1   MALHLSLSPPSIRSSPSFPCSGRQSIAALSDSKSGCFSSKSLSVTSSRSIGVS----GGN 60
           MAL+L  SP  I ++     S  +   A S S     +S S S+  S+ +G+       +
Sbjct: 1   MALNLCTSPKWIGTTVFDSASSSKPSLASSFST----TSFSSSILCSKRVGLQRLSLRRS 60

Query: 61  RSFKVNSSLETAG--ATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKF 120
            S  V SSLETAG   TVG+VTEVNKDTFWPIVNAAGDKTVVLDM+T+WCGPCKV+AP +
Sbjct: 61  ISVSVRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTKWCGPCKVIAPLY 120

Query: 121 QELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVHAI 180
           +ELS+KYLDVVFLKLDCNQDNK LAKELGIKVVPTFKILKD+K+VKEVTGAKFDDLV AI
Sbjct: 121 EELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAI 180

[Close]

BLAST of ClCG03G011670 vs. ExPASy Swiss-Prot
Match: Q9XFH9 (Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g16400 PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.9e-51
Identity = 115/189 (60.85%), Postives = 134/189 (70.90%), Query Frame = 0


Query: 1   MALHLSLSPPSIRSSPSFPCSGRQSIAALSD----------SKSGCFSSKSLSVTSSRSI 60
           ++L L+ SP S R SP    +G    + +            +K G  S     + S R I
Sbjct: 3   LSLRLAPSPTSFRYSP-ITSTGAGGFSPVKQHCRIPNSGVATKIGFCSGGGGVLDSGRRI 62

Query: 61  GVSGGNRSFKVNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVM 120
           G      S  V  SLET   TVGQVTEV+KDTFWPIV AAGDK VVLDMYTQWCGPCKV+
Sbjct: 63  G------SCVVRCSLETVNVTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQWCGPCKVI 122

Query: 121 APKFQELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDL 180
           APK++ELSEKY D+VFLKLDCNQDNKPLAKELGI+VVPTFKILKD+KVVKEVTGAK++DL
Sbjct: 123 APKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDL 182

[Close]

BLAST of ClCG03G011670 vs. ExPASy Swiss-Prot
Match: O48897 (Thioredoxin F-type, chloroplastic OS=Brassica napus OX=3708 GN=TRXF PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-48
Identity = 110/179 (61.45%), Postives = 133/179 (74.30%), Query Frame = 0


Query: 9   PPSIRSSPSFPCSGRQSIAALSDSKSGC-FSSKSLSVTSSRSIG------VSGGNRSFKV 68
           P S+R +PS P +   +    S +K  C   S S   T++R IG      V  G+ S  V
Sbjct: 2   PLSLRLAPS-PTALSPTTGGFSPAKKQCRIPSYSGVATTTRRIGLCSLDYVKRGDSSV-V 61

Query: 69  NSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEKY 128
             SL+T   +VGQVTEV+KDTFWPIV AAG+K VVLDMYTQWCGPCKV+APK++ LSEKY
Sbjct: 62  RCSLQTVNVSVGQVTEVDKDTFWPIVKAAGEKIVVLDMYTQWCGPCKVIAPKYKALSEKY 121

Query: 129 LDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVHAIDAVRSS 181
            DVVFLKLDCN +N+PLAKELGI+VVPTFKILKD++VVKEVTGAK+DDLV AI+  RS+
Sbjct: 122 EDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIETARSA 178

[Close]

BLAST of ClCG03G011670 vs. ExPASy Swiss-Prot
Match: Q8S091 (Thioredoxin F, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0913000 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-48
Identity = 98/128 (76.56%), Postives = 107/128 (83.59%), Query Frame = 0


Query: 53  SGGNRSFKVNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAP 112
           S G+ +  V +  E A A  GQVTEVNKDTFWPIV +AG K VVLDMYTQWCGPCKVMAP
Sbjct: 61  SSGSDTATVGAEAE-AVAVTGQVTEVNKDTFWPIVKSAGPKVVVLDMYTQWCGPCKVMAP 120

Query: 113 KFQELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVH 172
           KFQE+SEK  DVVFLKLDCNQDNK LAKELGIKVVPTFKILKD KVVKEVTGAK D+L+ 
Sbjct: 121 KFQEMSEKDQDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDGKVVKEVTGAKLDELIQ 180

Query: 173 AIDAVRSS 181
           AI+ V+SS
Sbjct: 181 AIETVKSS 187

[Close]

BLAST of ClCG03G011670 vs. ExPASy Swiss-Prot
Match: Q9XFH8 (Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 193.0 bits (489), Expect = 3.0e-48
Identity = 107/175 (61.14%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 9   PPSIRSSPSFPCSGRQSIAALSDSKSGC---FSSKSLSVTSSRSIGVSGGNRSFKVNSSL 68
           P S+R SPS P +   +      S+  C   +S    +     S+       S  V  SL
Sbjct: 2   PLSLRLSPS-PTALSPTTGGFGPSRKQCRIPYSGVPTTKIGFCSLDSRKRGDSSVVRCSL 61

Query: 69  ETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEKYLDVV 128
           ET   +VGQVTEV+KDTFWPIV AAG+K VVLDMYTQWCGPCKV+APK++ LSEKY DVV
Sbjct: 62  ETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVV 121

Query: 129 FLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVHAIDAVRSS 181
           FLKLDCN DN+PLAKELGI+VVPTFKILKD+KVVKEVTGAK+DDLV AI+  RS+
Sbjct: 122 FLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSA 175

[Close]

BLAST of ClCG03G011670 vs. ExPASy TrEMBL
Match: A0A1S3B9B3 (thioredoxin F-type, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487196 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.4e-88
Identity = 170/180 (94.44%), Postives = 175/180 (97.22%), Query Frame = 0


Query: 1   MALHLSLSPPSIRSSPSFPCSGRQSIAALSDSKSGCFSSKSLSVTSSRSIGVSGGNRSFK 60
           MALH SLSPPS+RSSPSFPCSGRQ I ALSDSKSGCFSS+SLSV+SSRSIGVSGGNRSFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIPALSDSKSGCFSSRSLSVSSSRSIGVSGGNRSFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSLETAGATVG+VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 61  VNSSLETAGATVGKVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVHAIDAVRSS 180
           YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKD KVVKEVTGAKFDDLVHAID VRSS
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDTVRSS 180

[Close]

BLAST of ClCG03G011670 vs. ExPASy TrEMBL
Match: A0A6J1DTK2 (thioredoxin F-type, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111023873 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 9.8e-87
Identity = 167/180 (92.78%), Postives = 176/180 (97.78%), Query Frame = 0


Query: 1   MALHLSLSPPSIRSSPSFPCSGRQSIAALSDSKSGCFSSKSLSVTSSRSIGVSGGNRSFK 60
           MAL LSLSPPSIRSSPS PC+G+Q IAA+SDSKS CFSS+SLSVTSSRSIG+SGGNR+FK
Sbjct: 1   MALRLSLSPPSIRSSPSLPCNGKQPIAAVSDSKSTCFSSRSLSVTSSRSIGISGGNRTFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPC+VMAPKFQELSEK
Sbjct: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCRVMAPKFQELSEK 120

Query: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVHAIDAVRSS 180
           YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKD+KVVKEVTGAKFDDLVHAI+AVRSS
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDNKVVKEVTGAKFDDLVHAIEAVRSS 180

[Close]

BLAST of ClCG03G011670 vs. ExPASy TrEMBL
Match: A0A0A0M340 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G651650 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.1e-85
Identity = 166/180 (92.22%), Postives = 173/180 (96.11%), Query Frame = 0


Query: 1   MALHLSLSPPSIRSSPSFPCSGRQSIAALSDSKSGCFSSKSLSVTSSRSIGVSGGNRSFK 60
           MALH SLSPPS+RSSPSFPCSGRQ IA LS+SKSGCFSS+SLS++SSRSIGVSG N SFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVHAIDAVRSS 180
           YLDVVFLKLDCN DNKPLAKELGIKVVPTFKILKD KVVKEVTGAKFD+LVHAIDAVRSS
Sbjct: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180

[Close]

BLAST of ClCG03G011670 vs. ExPASy TrEMBL
Match: A0A6J1JM96 (thioredoxin F-type, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111485679 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.9e-85
Identity = 168/180 (93.33%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MALHLSLSPPSIRSSPSFPCSGRQSIAALSDSKSGCFSSKSLSVTSSRSIGVSGGNRSFK 60
           MAL +SLSPPSIRSSPS PCSGRQ IAALSD+KSGCFSSK LSVTSSRSIGVS GNRSFK
Sbjct: 1   MALRISLSPPSIRSSPSLPCSGRQPIAALSDAKSGCFSSKRLSVTSSRSIGVSSGNRSFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           +NSSLETAGATVG VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK
Sbjct: 61  INSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120

Query: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVHAIDAVRSS 180
           YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKD KVVK VTGAKFDDLV AIDAVRSS
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAIDAVRSS 180

[Close]

BLAST of ClCG03G011670 vs. ExPASy TrEMBL
Match: A0A6J1HAM5 (thioredoxin F-type, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111461638 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.1e-84
Identity = 166/180 (92.22%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MALHLSLSPPSIRSSPSFPCSGRQSIAALSDSKSGCFSSKSLSVTSSRSIGVSGGNRSFK 60
           MAL +SLSPPSIRSSPS PCSGRQ IAAL D+KSGCFSSK LSVTSSRSIGVS GNRSFK
Sbjct: 1   MALRISLSPPSIRSSPSLPCSGRQPIAALPDAKSGCFSSKRLSVTSSRSIGVSSGNRSFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           +NSSLE AGATVG+VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK
Sbjct: 61  INSSLEIAGATVGKVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120

Query: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVHAIDAVRSS 180
           YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKD KVVK VTGAKFDDLV AIDAVRSS
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAIDAVRSS 180

[Close]

BLAST of ClCG03G011670 vs. TAIR 10
Match: AT5G16400.1 (thioredoxin F2 )

HSP 1 Score: 202.2 bits (513), Expect = 3.5e-52
Identity = 115/189 (60.85%), Postives = 134/189 (70.90%), Query Frame = 0


Query: 1   MALHLSLSPPSIRSSPSFPCSGRQSIAALSD----------SKSGCFSSKSLSVTSSRSI 60
           ++L L+ SP S R SP    +G    + +            +K G  S     + S R I
Sbjct: 3   LSLRLAPSPTSFRYSP-ITSTGAGGFSPVKQHCRIPNSGVATKIGFCSGGGGVLDSGRRI 62

Query: 61  GVSGGNRSFKVNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVM 120
           G      S  V  SLET   TVGQVTEV+KDTFWPIV AAGDK VVLDMYTQWCGPCKV+
Sbjct: 63  G------SCVVRCSLETVNVTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQWCGPCKVI 122

Query: 121 APKFQELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDL 180
           APK++ELSEKY D+VFLKLDCNQDNKPLAKELGI+VVPTFKILKD+KVVKEVTGAK++DL
Sbjct: 123 APKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDL 182

[Close]

BLAST of ClCG03G011670 vs. TAIR 10
Match: AT3G02730.1 (thioredoxin F-type 1 )

HSP 1 Score: 193.0 bits (489), Expect = 2.1e-49
Identity = 107/175 (61.14%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 9   PPSIRSSPSFPCSGRQSIAALSDSKSGC---FSSKSLSVTSSRSIGVSGGNRSFKVNSSL 68
           P S+R SPS P +   +      S+  C   +S    +     S+       S  V  SL
Sbjct: 2   PLSLRLSPS-PTALSPTTGGFGPSRKQCRIPYSGVPTTKIGFCSLDSRKRGDSSVVRCSL 61

Query: 69  ETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEKYLDVV 128
           ET   +VGQVTEV+KDTFWPIV AAG+K VVLDMYTQWCGPCKV+APK++ LSEKY DVV
Sbjct: 62  ETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVV 121

Query: 129 FLKLDCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVHAIDAVRSS 181
           FLKLDCN DN+PLAKELGI+VVPTFKILKD+KVVKEVTGAK+DDLV AI+  RS+
Sbjct: 122 FLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSA 175

[Close]

BLAST of ClCG03G011670 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 )

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-13
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 73  GQVTEVNKDTFW--PIVNAAGDKT-VVLDMYTQWCGPCKVMAPKFQELSEKYLDVVFLKL 132
           GQV   +    W   +  A   KT VV+D    WCGPC+ +AP F +L++K  +V+FLK+
Sbjct: 6   GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKV 65

Query: 133 DCNQDNKPLAKELGIKVVPTFKILKDSKVVKEVTGAKFDDLVHAI 175
           D   + K +A +  I+ +PTF  LK+ K++ +V GAK D+L   I
Sbjct: 66  D-TDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 109

[Close]

BLAST of ClCG03G011670 vs. TAIR 10
Match: AT5G42980.1 (thioredoxin 3 )

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-12
Identity = 29/79 (36.71%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 93  KTVVLDMYTQWCGPCKVMAPKFQELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKI 152
           K +V+D    WC PC+ +AP F +L++K+LDVVF K+D ++ N  +A+E  ++ +PTF  
Sbjct: 28  KLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELN-TVAEEFKVQAMPTFIF 87

Query: 153 LKDSKVVKEVTGAKFDDLV 172
           +K+ ++ + V GA  ++++
Sbjct: 88  MKEGEIKETVVGAAKEEII 105

[Close]

BLAST of ClCG03G011670 vs. TAIR 10
Match: AT5G39950.1 (thioredoxin 2 )

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-12
Identity = 30/88 (34.09%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 92  DKTVVLDMYTQWCGPCKVMAPKFQELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFK 151
           +K +V+D    WCGPC+++ P    +++K+ DV F+KLD + +   +AKE  +  +PTF 
Sbjct: 47  NKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVD-ELPDVAKEFNVTAMPTFV 106

Query: 152 ILKDSKVVKEVTGAKFDDLVHAIDAVRS 180
           ++K  K ++ + GAK D+L   +  +R+
Sbjct: 107 LVKRGKEIERIIGAKKDELEKKVSKLRA 133

The following BLAST results are available for this feature:

BLAST of ClCG03G011670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878300.1	1.2e-89	96.11	thioredoxin F-type, chloroplastic-like [Benincasa hispida]	[more]
XP_008443649.1	2.8e-88	94.44	PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis melo]	[more]
XP_022157062.1	2.0e-86	92.78	thioredoxin F-type, chloroplastic-like [Momordica charantia]	[more]
XP_004139092.1	2.2e-85	92.22	thioredoxin F-type, chloroplastic [Cucumis sativus] >KGN66631.1 hypothetical pro...	[more]
XP_022988428.1	3.8e-85	93.33	thioredoxin F-type, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of ClCG03G011670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29450	8.1e-54	65.59	Thioredoxin F-type, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
Q9XFH9	4.9e-51	60.85	Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g16400 PE=1 ...	[more]
O48897	1.3e-48	61.45	Thioredoxin F-type, chloroplastic OS=Brassica napus OX=3708 GN=TRXF PE=2 SV=1	[more]
Q8S091	1.3e-48	76.56	Thioredoxin F, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g09...	[more]
Q9XFH8	3.0e-48	61.14	Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g02730 PE=1 ...	[more]

BLAST of ClCG03G011670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B9B3	1.4e-88	94.44	thioredoxin F-type, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487196 P...	[more]
A0A6J1DTK2	9.8e-87	92.78	thioredoxin F-type, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A0A0M340	1.1e-85	92.22	Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G651650...	[more]
A0A6J1JM96	1.9e-85	93.33	thioredoxin F-type, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1114856...	[more]
A0A6J1HAM5	2.1e-84	92.22	thioredoxin F-type, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]

BLAST of ClCG03G011670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16400.1	3.5e-52	60.85	thioredoxin F2	[more]
AT3G02730.1	2.1e-49	61.14	thioredoxin F-type 1	[more]
AT3G51030.1	2.4e-13	39.05	thioredoxin H-type 1	[more]
AT5G42980.1	2.7e-12	36.71	thioredoxin 3	[more]
AT5G39950.1	2.7e-12	34.09	thioredoxin 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 143..154 score: 33.89 coord: 95..103 score: 31.23 coord: 103..112 score: 65.5
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 59..179 e-value: 1.4E-35 score: 123.6
None	No IPR available	PANTHER	PTHR10438:SF382	THIOREDOXIN F2, CHLOROPLASTIC	coord: 1..180
None	No IPR available	PANTHER	PTHR10438	THIOREDOXIN	coord: 1..180
None	No IPR available	CDD	cd02947	TRX_family	coord: 81..175 e-value: 2.70077E-27 score: 96.8584
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 75..175 e-value: 1.3E-23 score: 82.9
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 66..179 score: 13.01145
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 96..114
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 68..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G011670.1	ClCG03G011670.1	mRNA