ClCG03G011590 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G011590
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase domain-containing protein
LocationCG_Chr03: 22850032 .. 22851070 (-)
RNA-Seq ExpressionClCG03G011590
SyntenyClCG03G011590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAGTTGTTTTATAGCCCTAACTTTTGTTCTCTTGACGTTGGTGACGTCGTCATGTGTCCAAAAGGCCTCTGATGTGCTGGTTAGGGGTTTTGTGGATCCAAATTTGGTATAGTTAGTGCCACATCGAAACGATCGGAATTACGAGGGGAAAGGATTTTACAGCTTTTGTGGGAAATTGAAAAGAGAAAGGAGAGGGAAAGAGAGATGGAAAAGGACATATAAAACAAAATTAATATTAAAATAAGAAAAAGTTCACATCATTCACCTCATCTAATTTGTATGTTAATCAACTAACGGTCAAATAAATTTGGGGACCATTTAAACCAATTTTTTAAACCTCAAGGATTAAGAGTGTATCCAGACTAAATAGACATTTATCTTAGGATCAAAAGTGCATTTTGCCGATAAGTTTGATGGTTGAACTTTGAGAAGTTGTGTTTAACAAGAAATAGAAAAAGTGTCTAATAAGAACATGAACAACCAAAAGTTTCCAGATTTAAAGCATCAAACTATTTTACCACTTGTAACAACAAGCATTCACCTAACTCAATAAAGGAAACATTTTAACATTAATAAACTTCAAGAACTACTTCAAACTATTGAGCATGCCAATAAGACCAACTTGAAGTTTCAAAATCAAGCAACGCCAACTCTATTCTTCAAATTGAACATAAAATTTTGTAGTAAAAGGATTAGCAACAACGAAAACATTAGCCAGATTATCGTTTGGGCAGGGTATTGATTGGTGCCCCATTTCAAATAGGGAGGGGGAGGATTTGGTAGCCCTGTTTTCTTGGGAAGAAATTAAGAAGGCGGCTTTTGGGAGTGGAAAGAAGCAAATTGCAGGGATGGGATGGGATGGTATCTCGATGGGGTTTTATCAAGATAATTGGGAGCTTCTCAAGAATGAGTTGGAAGGTGTATTTAAAGAATTCCTTGAGAGGGGCATATTGAATATATCTATTTCTAAAACGTTTGTGTGCCTCATTCCGAAGAAGAACATGCAAATAGGGTTAAGGACTTTACACCTATAA

mRNA sequence

ATGTACAGTTGTTTTATAGCCCTAACTTTTGTTCTCTTGACGTTGGTGACGTCGTCATGTGTCCAAAAGGCCTCTGATGTGCTGGTTAGGGGTTTTGTGGATCCAAATTTGGGTATTGATTGGTGCCCCATTTCAAATAGGGAGGGGGAGGATTTGGTAGCCCTGTTTTCTTGGGAAGAAATTAAGAAGGCGGCTTTTGGGAGTGGAAAGAAGCAAATTGCAGGGATGGGATGGGATGGTATCTCGATGGGGTTTTATCAAGATAATTGGGAGCTTCTCAAGAATGAGTTGGAAGGTGTATTTAAAGAATTCCTTGAGAGGGGCATATTGAATATATCTATTTCTAAAACGTTTGTGTGCCTCATTCCGAAGAAGAACATGCAAATAGGGTTAAGGACTTTACACCTATAA

Coding sequence (CDS)

ATGTACAGTTGTTTTATAGCCCTAACTTTTGTTCTCTTGACGTTGGTGACGTCGTCATGTGTCCAAAAGGCCTCTGATGTGCTGGTTAGGGGTTTTGTGGATCCAAATTTGGGTATTGATTGGTGCCCCATTTCAAATAGGGAGGGGGAGGATTTGGTAGCCCTGTTTTCTTGGGAAGAAATTAAGAAGGCGGCTTTTGGGAGTGGAAAGAAGCAAATTGCAGGGATGGGATGGGATGGTATCTCGATGGGGTTTTATCAAGATAATTGGGAGCTTCTCAAGAATGAGTTGGAAGGTGTATTTAAAGAATTCCTTGAGAGGGGCATATTGAATATATCTATTTCTAAAACGTTTGTGTGCCTCATTCCGAAGAAGAACATGCAAATAGGGTTAAGGACTTTACACCTATAA

Protein sequence

MYSCFIALTFVLLTLVTSSCVQKASDVLVRGFVDPNLGIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNELEGVFKEFLERGILNISISKTFVCLIPKKNMQIGLRTLHL
Homology
[Close]
BLAST of ClCG03G011590 vs. NCBI nr
Match: TYK22164.1 (peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-15
Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 28  LVRGFVDPNLGIDWC---PISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMG 87
           L  G V+    + W     IS RE E+ V  F+ E I+K  F     +   +G DG SM 
Sbjct: 308 LENGLVEERFSVKWSLDEAISPREDEEHVVPFTIEVIEKVVFNCDGNR--ALGADGFSMA 367

Query: 88  FYQDNWELLKNELEGVFKEFLERGILNISISKTFVCLIPKKN 127
           F+QD+W+L+K +LEGVFKEF ERGILN  + +TFVCLIPKK+
Sbjct: 368 FFQDDWDLIKGDLEGVFKEFFERGILNKLVVETFVCLIPKKD 407

[Close]
BLAST of ClCG03G011590 vs. NCBI nr
Match: KAA0032235.1 (peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-15
Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 28  LVRGFVDPNLGIDWC---PISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMG 87
           L  G V+    + W     IS RE E+ V  F+ E I+K  F     +   +G DG SM 
Sbjct: 358 LENGLVEERFSVKWSLDEAISPREDEEHVVPFTIEVIEKVVFNCDGNR--ALGADGFSMA 417

Query: 88  FYQDNWELLKNELEGVFKEFLERGILNISISKTFVCLIPKKN 127
           F+QD+W+L+K +LEGVFKEF ERGILN  + +TFVCLIPKK+
Sbjct: 418 FFQDDWDLIKGDLEGVFKEFFERGILNKLVVETFVCLIPKKD 457

[Close]
BLAST of ClCG03G011590 vs. NCBI nr
Match: BBH07150.1 (TatD related DNase [Prunus dulcis])

HSP 1 Score: 85.1 bits (209), Expect = 5.0e-13
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 0 

Query: 38  GIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNEL 97
           G++WCPIS  E + L   F  EE++KA F  GK +  G   DG SM F+Q  WE++K +L
Sbjct: 323 GLNWCPISQTEADWLERPFELEEVQKAVFDCGKDKSPGP--DGFSMSFFQSCWEVVKGDL 382

Query: 98  EGVFKEFLERGILNISISKTFVCLIPKK 126
             V ++F + GI+N   ++TF+CLIPKK
Sbjct: 383 MKVMQDFFQSGIVNGVTNETFICLIPKK 408

[Close]
BLAST of ClCG03G011590 vs. NCBI nr
Match: VVA31869.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 85.1 bits (209), Expect = 5.0e-13
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 0 

Query: 38  GIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNEL 97
           G++WCPIS  E + L   F  EE++KA F  GK +  G   DG SM F+Q  WE++K +L
Sbjct: 70  GLNWCPISQTEADWLERPFELEEVQKAVFDCGKDKSPGP--DGFSMSFFQSCWEVVKGDL 129

Query: 98  EGVFKEFLERGILNISISKTFVCLIPKK 126
             V ++F + GI+N   ++TF+CLIPKK
Sbjct: 130 MKVMQDFFQSGIVNGVTNETFICLIPKK 155

[Close]
BLAST of ClCG03G011590 vs. NCBI nr
Match: BBN69274.1 (TatD related DNase [Prunus dulcis])

HSP 1 Score: 85.1 bits (209), Expect = 5.0e-13
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 0 

Query: 38  GIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNEL 97
           G++WCPIS  E + L   F  EE++KA F  GK +  G   DG SM F+Q  WE++K +L
Sbjct: 173 GLNWCPISQTEADWLERPFELEEVQKAVFDCGKDKSPGP--DGFSMSFFQSCWEVVKGDL 232

Query: 98  EGVFKEFLERGILNISISKTFVCLIPKK 126
             V ++F + GI+N   ++TF+CLIPKK
Sbjct: 233 MKVMQDFFQSGIVNGVTNETFICLIPKK 258

[Close]
BLAST of ClCG03G011590 vs. ExPASy TrEMBL
Match: A0A5D3DEZ6 (Peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00210 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.3e-16
Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 28  LVRGFVDPNLGIDWC---PISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMG 87
           L  G V+    + W     IS RE E+ V  F+ E I+K  F     +   +G DG SM 
Sbjct: 308 LENGLVEERFSVKWSLDEAISPREDEEHVVPFTIEVIEKVVFNCDGNR--ALGADGFSMA 367

Query: 88  FYQDNWELLKNELEGVFKEFLERGILNISISKTFVCLIPKKN 127
           F+QD+W+L+K +LEGVFKEF ERGILN  + +TFVCLIPKK+
Sbjct: 368 FFQDDWDLIKGDLEGVFKEFFERGILNKLVVETFVCLIPKKD 407

[Close]
BLAST of ClCG03G011590 vs. ExPASy TrEMBL
Match: A0A5A7SSQ8 (Peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00550 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.3e-16
Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 28  LVRGFVDPNLGIDWC---PISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMG 87
           L  G V+    + W     IS RE E+ V  F+ E I+K  F     +   +G DG SM 
Sbjct: 358 LENGLVEERFSVKWSLDEAISPREDEEHVVPFTIEVIEKVVFNCDGNR--ALGADGFSMA 417

Query: 88  FYQDNWELLKNELEGVFKEFLERGILNISISKTFVCLIPKKN 127
           F+QD+W+L+K +LEGVFKEF ERGILN  + +TFVCLIPKK+
Sbjct: 418 FFQDDWDLIKGDLEGVFKEFFERGILNKLVVETFVCLIPKKD 457

[Close]
BLAST of ClCG03G011590 vs. ExPASy TrEMBL
Match: A0A4Y1RS61 (TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_019005 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 0 

Query: 38  GIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNEL 97
           G++WCPIS  E + L   F  EE++KA F  GK +  G   DG SM F+Q  WE++K +L
Sbjct: 323 GLNWCPISQTEADWLERPFELEEVQKAVFDCGKDKSPGP--DGFSMSFFQSCWEVVKGDL 382

Query: 98  EGVFKEFLERGILNISISKTFVCLIPKK 126
             V ++F + GI+N   ++TF+CLIPKK
Sbjct: 383 MKVMQDFFQSGIVNGVTNETFICLIPKK 408

[Close]
BLAST of ClCG03G011590 vs. ExPASy TrEMBL
Match: A0A5H2XQW2 (TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_862S001100 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 0 

Query: 38  GIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNEL 97
           G++WCPIS  E + L   F  EE++KA F  GK +  G   DG SM F+Q  WE++K +L
Sbjct: 173 GLNWCPISQTEADWLERPFELEEVQKAVFDCGKDKSPGP--DGFSMSFFQSCWEVVKGDL 232

Query: 98  EGVFKEFLERGILNISISKTFVCLIPKK 126
             V ++F + GI+N   ++TF+CLIPKK
Sbjct: 233 MKVMQDFFQSGIVNGVTNETFICLIPKK 258

[Close]
BLAST of ClCG03G011590 vs. ExPASy TrEMBL
Match: A0A5E4FWN6 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035884 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 0 

Query: 38  GIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNEL 97
           G++WCPIS  E + L   F  EE++KA F  GK +  G   DG SM F+Q  WE++K +L
Sbjct: 70  GLNWCPISQTEADWLERPFELEEVQKAVFDCGKDKSPGP--DGFSMSFFQSCWEVVKGDL 129

Query: 98  EGVFKEFLERGILNISISKTFVCLIPKK 126
             V ++F + GI+N   ++TF+CLIPKK
Sbjct: 130 MKVMQDFFQSGIVNGVTNETFICLIPKK 155

The following BLAST results are available for this feature:
BLAST of ClCG03G011590 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK22164.11.1e-1548.04peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Cucumis melo var. makuwa][more]
KAA0032235.11.1e-1548.04peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Cucumis melo var. makuwa][more]
BBH07150.15.0e-1345.45TatD related DNase [Prunus dulcis][more]
VVA31869.15.0e-1345.45Hypothetical predicted protein, partial [Prunus dulcis][more]
BBN69274.15.0e-1345.45TatD related DNase [Prunus dulcis][more]
BLAST of ClCG03G011590 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG03G011590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DEZ65.3e-1648.04Peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 OS=Cucumis melo var. makuwa... [more]
A0A5A7SSQ85.3e-1648.04Peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 OS=Cucumis melo var. makuwa... [more]
A0A4Y1RS612.4e-1345.45TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_019005 PE=4 SV=1[more]
A0A5H2XQW22.4e-1345.45TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_862S001100 PE=4 SV=1[more]
A0A5E4FWN62.4e-1345.45Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3... [more]
BLAST of ClCG03G011590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G011590.1ClCG03G011590.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding