ClCG03G011460 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G011460
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCG_Chr03: 22199995 .. 22200345 (+)
RNA-Seq ExpressionClCG03G011460
SyntenyClCG03G011460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACCAGAAATAGCCACTCAAGTAATGGGATATGAGAAATCGAAGGACCTATGGGAAGCAATCCAAAAGTTGTTCGATGTTCAATCCAAAACTGAAGAGGATTTCCTCAGGCAAACATTCCAACAGACTAGAAAAGGTAATTTTCGTATGTCTGAATATCTACGATTGATGAAAATGCACTCTGATAATCTGGGTCAAGCAGAAAGTCATGTTCCCACTAGACCGCTTGTATCTCAAGTCCTTTTAGGGCTTGATGAAGATTACAATCCAGTAGTTGCTACCTTACAAGGAAAACCAGAAACAACTTGGCTAGAAATGCAATTGGAGCTATTAACCTATGAAAGATGA

mRNA sequence

ATGACACCAGAAATAGCCACTCAAGTAATGGGATATGAGAAATCGAAGGACCTATGGGAAGCAATCCAAAAGTTGTTCGATGTTCAATCCAAAACTGAAGAGGATTTCCTCAGGCAAACATTCCAACAGACTAGAAAAGGTAATTTTCGTATGTCTGAATATCTACGATTGATGAAAATGCACTCTGATAATCTGGGTCAAGCAGAAAGTCATGTTCCCACTAGACCGCTTGTATCTCAAGTCCTTTTAGGGCTTGATGAAGATTACAATCCAGTAGTTGCTACCTTACAAGGAAAACCAGAAACAACTTGGCTAGAAATGCAATTGGAGCTATTAACCTATGAAAGATGA

Coding sequence (CDS)

ATGACACCAGAAATAGCCACTCAAGTAATGGGATATGAGAAATCGAAGGACCTATGGGAAGCAATCCAAAAGTTGTTCGATGTTCAATCCAAAACTGAAGAGGATTTCCTCAGGCAAACATTCCAACAGACTAGAAAAGGTAATTTTCGTATGTCTGAATATCTACGATTGATGAAAATGCACTCTGATAATCTGGGTCAAGCAGAAAGTCATGTTCCCACTAGACCGCTTGTATCTCAAGTCCTTTTAGGGCTTGATGAAGATTACAATCCAGTAGTTGCTACCTTACAAGGAAAACCAGAAACAACTTGGCTAGAAATGCAATTGGAGCTATTAACCTATGAAAGATGA

Protein sequence

MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKMHSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLELLTYER
Homology
BLAST of ClCG03G011460 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 161.8 bits (408), Expect = 3.6e-36
Identity = 78/110 (70.91%), Postives = 94/110 (85.45%), Query Frame = 0

Query: 1   MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
           MTPE+ATQVMGYE + DLW AIQ+LF VQS+ EED+LRQ FQQTRKG+ +M+++LR+MK 
Sbjct: 53  MTPEVATQVMGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKS 112

Query: 61  HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLE 111
           H+DNLGQA S VPTR L+SQVLLGLDE+YNPVVAT+QGK   +W EMQ E
Sbjct: 113 HADNLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAE 162

BLAST of ClCG03G011460 vs. NCBI nr
Match: XP_038896600.1 (uncharacterized protein LOC120084860 [Benincasa hispida])

HSP 1 Score: 156.0 bits (393), Expect = 2.0e-34
Identity = 76/116 (65.52%), Postives = 94/116 (81.03%), Query Frame = 0

Query: 1   MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
           M  ++A Q+MGYE +K+LW+AIQ+LF VQS+ EED+LRQ FQQTRKG  +MS YL+LMK+
Sbjct: 1   MALDVAVQLMGYETAKELWQAIQELFGVQSRAEEDYLRQLFQQTRKGGQKMSGYLKLMKL 60

Query: 61  HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLELLTYER 117
           HSDNL Q  S V TR L+SQVLLGLDE+YN VV  +QGKP  +WL+MQ ELLTYE+
Sbjct: 61  HSDNLAQTSSPVSTRTLISQVLLGLDEEYNLVVVGIQGKPGISWLDMQSELLTYEK 116

BLAST of ClCG03G011460 vs. NCBI nr
Match: KAA0057475.1 (uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK30171.1 uncharacterized protein E5676_scaffold216G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 7.5e-34
Identity = 72/115 (62.61%), Postives = 94/115 (81.74%), Query Frame = 0

Query: 1   MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
           M P++A Q+MG+  +KDLWEAIQ LF ++S+ EE FLR TFQ TR+GN++M +YLR+MK+
Sbjct: 87  MVPDVALQLMGFNTAKDLWEAIQNLFGIKSRAEEYFLRHTFQTTREGNYKMEDYLRIMKI 146

Query: 61  HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLELLTYE 116
           ++DNLGQA S VP R L+SQVLLGLDE YNPV A +QGKP+ +WL+MQ ELL +E
Sbjct: 147 NADNLGQAGSPVPHRYLISQVLLGLDEVYNPVTAVIQGKPDISWLDMQSELLIFE 201

BLAST of ClCG03G011460 vs. NCBI nr
Match: KGN65684.1 (hypothetical protein Csa_019689 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-33
Identity = 70/116 (60.34%), Postives = 92/116 (79.31%), Query Frame = 0

Query: 1   MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
           +TPE+  Q++G+  +KD+WEA    F V+S+ EEDFLRQTFQ TRKGN  M +YLR+MK 
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKT 85

Query: 61  HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLELLTYER 117
           ++DNLGQAES +P R L+SQVLLGLDE YNPV+  +QGKPE +WL+MQ +LL +E+
Sbjct: 86  NADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEK 141

BLAST of ClCG03G011460 vs. NCBI nr
Match: XP_038905164.1 (uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 74/116 (63.79%), Postives = 92/116 (79.31%), Query Frame = 0

Query: 1   MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
           MTPE+A QVMG E +KDLW +I +LF VQS+ EED+LR  FQ TRKGN +M EYL+ MKM
Sbjct: 64  MTPEVAIQVMGCECAKDLWTSIPQLFGVQSRVEEDYLRHVFQTTRKGNLKMEEYLQTMKM 123

Query: 61  HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLELLTYER 117
           ++DNL QA S +P R LVSQVLLGLDE+YN +VA +QG+ + +WL+MQ ELL YER
Sbjct: 124 NTDNLEQAGSPMPPRTLVSQVLLGLDEEYNAIVAMIQGRVDMSWLDMQSELLLYER 179

BLAST of ClCG03G011460 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.8e-36
Identity = 78/110 (70.91%), Postives = 94/110 (85.45%), Query Frame = 0

Query: 1   MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
           MTPE+ATQVMGYE + DLW AIQ+LF VQS+ EED+LRQ FQQTRKG+ +M+++LR+MK 
Sbjct: 53  MTPEVATQVMGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKS 112

Query: 61  HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLE 111
           H+DNLGQA S VPTR L+SQVLLGLDE+YNPVVAT+QGK   +W EMQ E
Sbjct: 113 HADNLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAE 162

BLAST of ClCG03G011460 vs. ExPASy TrEMBL
Match: A0A5D3E3L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001590 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.7e-34
Identity = 72/115 (62.61%), Postives = 94/115 (81.74%), Query Frame = 0

Query: 1   MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
           M P++A Q+MG+  +KDLWEAIQ LF ++S+ EE FLR TFQ TR+GN++M +YLR+MK+
Sbjct: 87  MVPDVALQLMGFNTAKDLWEAIQNLFGIKSRAEEYFLRHTFQTTREGNYKMEDYLRIMKI 146

Query: 61  HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLELLTYE 116
           ++DNLGQA S VP R L+SQVLLGLDE YNPV A +QGKP+ +WL+MQ ELL +E
Sbjct: 147 NADNLGQAGSPVPHRYLISQVLLGLDEVYNPVTAVIQGKPDISWLDMQSELLIFE 201

BLAST of ClCG03G011460 vs. ExPASy TrEMBL
Match: A0A0A0LXB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.2e-34
Identity = 70/116 (60.34%), Postives = 92/116 (79.31%), Query Frame = 0

Query: 1   MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
           +TPE+  Q++G+  +KD+WEA    F V+S+ EEDFLRQTFQ TRKGN  M +YLR+MK 
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKT 85

Query: 61  HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLELLTYER 117
           ++DNLGQAES +P R L+SQVLLGLDE YNPV+  +QGKPE +WL+MQ +LL +E+
Sbjct: 86  NADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEK 141

BLAST of ClCG03G011460 vs. ExPASy TrEMBL
Match: A0A5D3C373 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002430 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 70/112 (62.50%), Postives = 85/112 (75.89%), Query Frame = 0

Query: 5   IATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKMHSDN 64
           IA Q+MG+  +KDLWEA Q LF VQS+ EEDFLRQ FQ TRK      +YLR+MK +SD 
Sbjct: 45  IAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKVRASYEDYLRIMKTNSDK 104

Query: 65  LGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLELLTYER 117
           LGQA S VP R  +SQ LLGLDE YNPV+A +QGKPE +W++MQ ELLT+E+
Sbjct: 105 LGQAGSPVPKRAFISQALLGLDEVYNPVIAVIQGKPEISWIDMQSELLTFEK 156

BLAST of ClCG03G011460 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.2e-30
Identity = 68/116 (58.62%), Postives = 87/116 (75.00%), Query Frame = 0

Query: 1   MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
           MTP++A Q+MG+   +DLW+A Q  F VQS+ EEDFLRQ  Q TRKGN +M EYL +MK 
Sbjct: 123 MTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKT 182

Query: 61  HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLELLTYER 117
           + DNLGQ  S VP R L+SQVLLGLDE YN V+  +QGKP+ +WL+MQ +LL +E+
Sbjct: 183 NVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEK 238

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022148963.13.6e-3670.91uncharacterized protein LOC111017501 [Momordica charantia][more]
XP_038896600.12.0e-3465.52uncharacterized protein LOC120084860 [Benincasa hispida][more]
KAA0057475.17.5e-3462.61uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK... [more]
KGN65684.11.3e-3360.34hypothetical protein Csa_019689 [Cucumis sativus][more]
XP_038905164.11.1e-3263.79uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D5J01.8e-3670.91uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A5D3E3L73.7e-3462.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LXB76.2e-3460.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1[more]
A0A5D3C3731.1e-3062.50Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7SIT73.2e-3058.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..111
e-value: 2.1E-8
score: 34.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G011460.1ClCG03G011460.1mRNA