ClCG03G011250 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G011250
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionGag/pol protein
LocationCG_Chr03: 21476343 .. 21483537 (+)
RNA-Seq ExpressionClCG03G011250
SyntenyClCG03G011250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACGACGATCTATATGGAAGGGTAGTTTTGTTGATGCATTCCTGTTGAGAATGAAGAAGAAGAGAGATCCTCTTTTGAACAGGAAAATTTGGTCAGGTAGATCTTCGATTTTTCCGGAATTCGTTGATAGCTCCGTACGAATTTACAATGTAAAAACTTCTGTTCGTTGCTATTGATTGACAACCAATGTTTGATTGTGCAATTTAACGCTTTAGATTAACATATAATATGTGACATTTATAGGTTAATCTCTAAGAAGCAAAATGTTAGGTAGATTTGTGATTTTTAGTCGACAATGAAGAGCATTATTCTATCGACCTAGGGAAAATCGAATTAAATTTCTAATTAGGCTTTTCCAGTTGGAAATTTATCCTAGCATAATCCTTAAAGCTTAATGCGGTTAGTTAAATTGGTTAGGATGCTTGTTATCTAATCAAATTGGTTAATTTGATACTTTGGACCATTGATTAGCCTTTCTAATCAATTGGGCTTGACATAGGTAAGAAGTTAAAATGATGCTTTCATAATTCGATGATCAAAATTACATTGGGTGATTTCGTTCCTCCAAACTAGAATGTTTCGTTTAATTGTATATTTATCCTTTGCTTTCCTTGCACTTTATTTTCATGCATATTCAAATCTCAAACCACACAAACCCCCCTCCCATTTATCGGTTTAACTAAATAGTTAGCTTTGAGAAACTAATTTTTGTGCTTCCATGCGGATTGACCCGGTCTTGCCGCAAATACTATGCTTTAGTAGTAATAGTTGTAAAGATCGATATAATTATAAATATTATTTGATTGAATCTTTTGGGAGCGACACCAAATATATTTTGATTGAGTCTTTTGGGAGCGACACCAAAAAGGATCACATCAGTTATTCCTAGAATTTTGTAGGTTTTGCGCATTAAGGTAGTAAGACGGACCATCAGGGTTAATTTGGTGCAAAAAAACGTCCAAACAAAGCCTTAGAAGCATAAACCAAGTGAGGGGGTCAAAATGACCAAAATGCCCATAGAGCACAGTTGCTCTGTGCCTTACACTCTGCTTTACGCTCTCAACCCGAGAGGAACTTTTTATGCAGCATTGCGACACCCCAAGGGAGCACATGACGCTCCGGAGATTGATAGAATTCCATTCTTGCACGCGTGCCTCTTCATTTGACGAGCGTAGTTAGCAGCGTCGCACGTTTGAGACCGATGCTATGATCTCTTTGCCGAGCGTACCGACGCTGCTTATCAGTACAATGACGTTCCAACATGTTTTATAAATACTTGTGAAATTTTAGGTCATCTTTTATTAACCCGAATCCCGACCTCCATTGTTGATCATCTCCACCTCTAGTTTCCATCTCCCCCTCTCTCAATCGTTTTGTTTTTCCCTTGTAATTTCCCTCTTCAAGATTATGAGTGGCTAAGGTAATCTTTATTCGGGGATAAGGTTTTAGGCTTAATTATCCTTGAGAAATTGTAATTTTTTTTATGGTTTTCTACTGTAAATTCTCTTGGGTTTTGAATTCTTATTATATTGAAGCACTCTGATTGAACTAGCAACTCTAGATGAATGTTTCTTTAATTGCAATGTTCACTTGGCGATTAATATTAATGATGCACTAGGTTGCATGATTAGGGAGTAAGTGTTTAATTAGGGACTTTTCCACTAGTTTTGCATTTACGAGCTAATTAAACTCAAGAGAGAAATCGAATGTTAGATTAGACTATCCATTCTCTCATTCATCACAATTGCAATCTCGCCGCTGTTCTTAATGCAAATTCAAATCGTTATCTAGGCTGCTTGGGATCGAAATAACGTAGAAGAATTTAGTTCAAATTGAATTTGTGTCATTTGATAATTAGGGACATTTGGTGATGATTGTCATTAAATGATTGTGCATTTGCTTGCAATTAACCATGATTTCTAGTGTTCGATGATAGAAACTAAGTGTTGGAGGATTTCAAAGTTAAAAGGGTTGCGATCTCGGAACTTAACACCATTGGAGGATTTCAAAGGAAGTACGATCTTCATAGCAACACATACAACCCTAGATGGCGGGACCATCCAAACTTCAAATGGGAAGGTCAAGGACAAAGCAACAACATAGCTCATAATCAACCATCTTCGTCAGCTCTAAGTATGTCCCTAGAAGATATTGTTCAATCTCATGCTGACTACTCTTTAAAATTCCAATAGGACATACACCAGCTTCAAAAGGGTTCAATTAAGCTCTCTCAATAAATAAAGTCCTTACAACAGGAAACAAGGACGAGGTTCAGTAACTTGGGTACCTAAATCACTCAGCTAGCAACTGCAATTAGTAGGTTGGAGAACAAGGCCTCTGGTAAATTGTCTACTCAACCTGATCACCAAAATATAATTGCTATCACCCTTTGAAGTGGCAAAGAGCTTCCTCCCGTCACTTCTACACCCATTGCCCCACCCACCCCATCTCCTGTCAGTAATCTAGATAAGGTAAGAAAAGATGACGAAATTCCAGCAGAGGCATCACCGTGACCATCGAATTCTAACGTTAGTACATCATCTTCACCTCTCATTGATTTTCAGTTATTGCTAAAGCTTCGTTTCTTAGTAGGCTAGCTAAGCCAAAAGTGGAGGATAAAGATGAGAAGATCTTAGAAACGTTCAGGAAGGTGCAAAACAATACCCCTCTCTTTAATATCATTCAACAAGTACCAAGGTATGCTAAGTTTCTCAAGGAACTTTGCACGAACAAGAGGAAAGTGAAGGATAAGGATCGAGTTGTGGTAAGTGCTTAACTAAAGGAACCATGACTCCAATCTTGATGCATTTCAAGAACAATATTTGCAAACAAGGAAGTCACACAAATATATTCAATCAATGAGACAATTTTCAAAATATTCTTAGCCTATTCATGCATGAAAAAATGCAAAGCCTTTCTTCTTAGACCATAATGAACTCGAAAAAGCTTTAAACGATCCTCAATTTATTTTCCTCCTACATTGGCTCAAACTCTGACTATTAAATGAAAAAAAAAATCAAAGTGGTAATATGTCAATTGAGACGTTGTTGCGTTTGATATGTGTATGATACGTTATGCTCATAATGGCCTAATGTCGCGTTGAAAATTGTATAAGATGTATACATTAATACGCAAGTTTTCCTACAAAAACCAAAGTGCAAGTTTAAATAGGTTTTCCTTCGGAGCCTAGGGTCAAAAACAAGGATTTGTAATAATTTGGCATTGAGAAAATTCTTTAGTTTGATGCGTTGAACTGTACAAATTTACTGATATGTTCATGATTGAATTCTCTAAAACTAAATTTATACATAAAGAATTTATGGATAATCACATGGAATCATGATGTGGGATGGAAATTTCGTTAGTCACACACGTTAATGACATCAAGACCATTGTTTACTCTTAAGGAAATACATATTTATTTACCAATATTTTAAGTTTATGCTCAGCTTGTTGGGAGTATTTTTTGGTGTTCAAGGAATTGGGGACCTGTGATCTTTATCCTCAAGTAAGTAATTGTGCATATATGCCTTTTTATTTTTTATTTTATTTTTTAATGAATTAATTAACTTATAATTATATGATTTCTCAACTTTACTTGGTATATTTTAAAATGAAAACAGTTTTCTTTTATTTTAGATTATATAACCGTTGATTCCTTCTTTTTCTTAGCATTACAGTTGACAAGTCTAGATGTCATTAACGTGTGTGACTAACAAAATTTTATTCCTAGGTGCAAAAGATACAATTTCTCTTATTTGAAGTCGGTGATTGTTGGTTTTCATTCTCATATCACTAAAAAATTGTTGGGGCAAGAACAAGAAGGGGATAGACCTTCAAATACTTAGGTATTTTTTAAAGTTAAAGTTCAAACTCCGTTTATAAATGCATGTATATTATGTGTGGCTATCCTGCAGTTATGGTAGTCAATTCATCCATTTAGTGTCGTTATTATATACTTGAGTTAGTTTTGATAATGTGTCACTTAGACAGTTTTTAGGTACTTTTTAATTGGTTTTGATAATCAAAGTGCACATGTCGTTGTTACAGGGATGCGTCCCCACTAGAGATTTTAGAATGGACGATTGATAAGAAAAAGGAAGAGCAACTTTTCCCATCATAACTCAATTTGGAAGTCGGCCCAATGGAAGAACCACCATAAAATAAATATGAACTACTTTGGTTGTTTGGGGAGTTAAATTGATTCTTGGAAAACTTTTAGGTACTTTTTATGTTGGTTTGAGAGTGAAAGTGTCACTTAGACACTTTTTAGGTAGCTTCTAGGTATGGTTGGAGAGTAAAAGTTGCACTTGAGCATTTAGGTTGTTTTGAGAATCAATGTGTCACTTACACACTTTTTGAAAATTATTAGGTTGGTTTTTAGAGCTAAAGTGGCACTTGGGCAGTTTTTGGTTGTTTTGAGAAACAAATGGTCATTTACACACTTTTTGGAAACTTTATAGTTTGTTTTGATAATCAAAGTGCATATGAACAATTTTGGTTGTTTGGGGAGTTAACTTGTTTCTTGGAAAACTTTTAGGTACTTTATATGTTGGTTTGAGAGTGAAAGTGTCACTTAGACACTTTTTAGGTAGTTTTTAGGTTTGGTTGGAGAGTAAAAGTTGCACTTAAGCATTTGAGGCTCTTTTGAGAATCAATGTGTCACTTACACACTTTTTGAAAATTGTTAGGTTGGTTTTTAGAGCTAAAATGGCACTTGGCATTTTTTTCTGTTGTTTTCAGAAACAAAAGGTCATTTTTGCACATATGAACTATTTTGGTTGTTTGGGGAGTTAACTTGTTTCTTGGAAAACTTTTAGGTAATTTTTATGTTGGTTTGAGAGTGAAAGTGTCACTTAGACACTTTTTAGGTAGTTTTTAGGTTTGGTTGGAGAGTAAAAGTTGCACTTGAGCATTTAGGTTGTTTTGAGAATCAATGTGTCACTTACACACTTTTTGAAAATTGTTAGGTTGGTTTTTAGAGCTAAAGTGACACTTGGGTATTTTTTGGTTGTTTTGAGAAACAAATGGTTATTTACACACTTTTTGGGAACTTTATAGTTTGTTTTGATAATCAAAGTGCACATATGAACTATTTTGGTTGTTTGGGGAGTTACCTTGTTTCTTGGAAAACTTTTAGGTACTTTTTATGTTGGTTTGAGAGTGAAAGTGTCCCTTAGACACTTTTTAGGTAGTTTTTAGGTTTGGTTAGAGAGTAAAAGTTGCACTTAAGCATTTGAGGCTGTTTTTAGAATCAATGTATCACTTACACAGTTTTTGAAAATTATTAGGATAGTTTTTAGAGCTAAAATGGCACTTGGGCAGTTTTTGGTTGTTTTGAGAAACAAATGGTCATTTACACACTTTTTGAATACTTTATAGTTTGTTTTGATAATCAAAGTGCACATATGAACTATTTTGATTGTTTGGGGAGTTAACTTGTTTTTTGGAAAACCTTTACGTACTTTTTATGTTTGTTTGAGAGTATTTAAATTATATAGATTTTTTGCTCGTATTGGATTAATGTGCTTGAGTTCTAGGAAGATTTTTTTTTTTGTTTTTTTGTGATAAGTATTATTTGTATTATGTTTCACTTGTCCTCCCCCCCCCCCTCCCCCAAACGAAGAAGTTTTTCATTTGACCTTTATTTTTTTTAATAGACTAATGTATGAGTATTTCTACTTTTTAGTAGTTATACCCTTAAAAAGTTGGACAAGTTACAATATTTTTTATATGATTTTTATGTTAATATTTAATGCCAAAAGTTTGTTAGCTTTGTAGTAACTAAGCAATGAATTAAATTTGGAGGTTATCTATATTATTAAAGTTGATTTGAAGATTATAATGTGATTTTGAGCCTATTTATGTGGTTATATTGTGACTCTATGTATCATTTCTATTTTAAAGTGTTATTTGAAACTTACCTGTATGATTTAAGTGGGGTTTTGAGTGTAAATGTACTTAACAGAATGATATTGTTACATTACAATCAACATATATATAACCTACATATTGTTATTATTGTTCACCTTGCTATATTGAGTTAAATTTTGAAATGAATGTTTTGTTTACTAGGTTCTTGAACAAGGTAATTGAAGCAAAGAAACCCACCAAGCAAGATGTTTATATAGGTGTTGTAAATTTTTTTTGGTATTGTGCCAATACTTAGTTGTAATTACTAAATTTGTAAATGACTTACCCAAAGTTTGGGTACTAGTGTTGTATATAGTTTCCTTGTATTAAGGTAAACTCTATTGTTATATATGAAAGTTTATAAATATGTTTGTGTACATATTTTATGTTGAAATTGGAGGAAACACAGGTGTAATAACATGTATCATTGAAAGGGTTTGTTTGACATTTGAAAAAAGTCAAGATGTAGTTTTATGACAGTGGAATAGTGTCATCAATCAAATTTCAATGACTATAAATAAGTGGGGCAACATACGTAATTCAATGACGTTTAAAAAGTGTCATAATTAAGGTATTATTGACACTATAAATGTGAATTTATTTGTTGTTCAATGACAGAATTTTAATGTCAATATAACGCTTTAATTGACAGAAAAAGTCAACATTTTGATCATTTATTGACTGCGAAAAATTGTCATTAAAAATGGTTTTCATGACATATAATAAATGTCAATACATGTTCTTTGTTGACTGTATTTAAAAGTCATGAAACTATCAATGATGACTGATTTCTCATGTGTCATCTATACACTTTAGATGATAGTCAAGAAATGTCCTAATGACAGTTTTTTAGAGTCATAGAAGCTTATTTTTTTTGTAGTGATAGTTTGGTGAAGCACAAAACAAAGTTGCATTGTTGACTCTACCATGGAGGTAGAGTATATAGCTGCTTGTGAAGCTGCTAAAGAGGCTATCTGACTTAGGAGGTTTTTGACAGACCTGGAACTTGTTCCAAACATGTCAATGCTCATCACACTTTATTGTGATAATAGTTGTATTGTGGCAAATTCCAAGGAGCCTAGAAGCCACAAACATGGAAAGCATATAGAGTGCAAGTATCATTTGATACGGGAGATTGTGCAAGGAGGAGACATGATCGTCATGCACATTGCTTCAGAGCACAATGTTGCCGATCCATTTACAAAAGCTCTCACGGCTACAGTGTTTGAGGGTCACCTGGAGAGTCTGGGTCTACGAGACATGCCACATCTAGTCTAG

mRNA sequence

ATGCCACGACGATCTATATGGAAGGGTAGTTTTGTTGATGCATTCCTGTTGAGAATGAAGAAGAAGAGAGATCCTCTTTTGAACAGGAAAATTTGGTCAGGTAGATCTTCGATTTTTCCGGAATTCGTTGATAGCTCCAAGCATAAACCAAGTGAGGGGGTCAAAATGACCAAAATGCCCATAGAGCACAGTTGCTCTGTGCCTTACACTCTGCTTTACGCTCTCAACCCGAGAGGAACTTTTTATGCAGCATTGCGACACCCCAAGGGAGCACATGACGCTCCGGAGATTGATAGAATTCCATTCTTGCACGCGGTTGCGATCTCGGAACTTAACACCATTGGAGGATTTCAAAGGAAGTACGATCTTCATAGCAACACATACAACCCTAGATGGCGGGACCATCCAAACTTCAAATGGGAAGGTCAAGGACAAAGCAACAACATAGCTCATAATCAACCATCTTCGTCAGCTCTAAAGCTTCCTCCCGTCACTTCTACACCCATTGCCCCACCCACCCCATCTCCTGTCAGTAATCTAGATAAGGTAAGAAAAGATGACGAAATTCCAGCAGAGGCATCACCTAGGCTAGCTAAGCCAAAAGTGGAGGATAAAGATGAGAAGATCTTAGAAACGTTCAGGAAGGTGCAAAACAATACCCCTCTCTTTAATATCATTCAACAAGTACCAAGGTATGCTAAGTTTCTCAAGGAACTTTGCACGAACAAGAGGAAAGTGAAGGATAAGGATCGAGTTGTGTTTGGTGAAGCACAAAACAAAGTTGCATTGTTGACTCTACCATGGAGGAGGTTTTTGACAGACCTGGAACTTGTTCCAAACATGTCAATGCTCATCACACTTTATTGTGATAATAGTTGTATTGTGGCAAATTCCAAGGAGCCTAGAAGCCACAAACATGGAAAGCATATAGAGTGCAAGTATCATTTGATACGGGAGATTGTGCAAGGAGGAGACATGATCGTCATGCACATTGCTTCAGAGCACAATGTTGCCGATCCATTTACAAAAGCTCTCACGGCTACAGTGTTTGAGGGTCACCTGGAGAGTCTGGGTCTACGAGACATGCCACATCTAGTCTAG

Coding sequence (CDS)

ATGCCACGACGATCTATATGGAAGGGTAGTTTTGTTGATGCATTCCTGTTGAGAATGAAGAAGAAGAGAGATCCTCTTTTGAACAGGAAAATTTGGTCAGGTAGATCTTCGATTTTTCCGGAATTCGTTGATAGCTCCAAGCATAAACCAAGTGAGGGGGTCAAAATGACCAAAATGCCCATAGAGCACAGTTGCTCTGTGCCTTACACTCTGCTTTACGCTCTCAACCCGAGAGGAACTTTTTATGCAGCATTGCGACACCCCAAGGGAGCACATGACGCTCCGGAGATTGATAGAATTCCATTCTTGCACGCGGTTGCGATCTCGGAACTTAACACCATTGGAGGATTTCAAAGGAAGTACGATCTTCATAGCAACACATACAACCCTAGATGGCGGGACCATCCAAACTTCAAATGGGAAGGTCAAGGACAAAGCAACAACATAGCTCATAATCAACCATCTTCGTCAGCTCTAAAGCTTCCTCCCGTCACTTCTACACCCATTGCCCCACCCACCCCATCTCCTGTCAGTAATCTAGATAAGGTAAGAAAAGATGACGAAATTCCAGCAGAGGCATCACCTAGGCTAGCTAAGCCAAAAGTGGAGGATAAAGATGAGAAGATCTTAGAAACGTTCAGGAAGGTGCAAAACAATACCCCTCTCTTTAATATCATTCAACAAGTACCAAGGTATGCTAAGTTTCTCAAGGAACTTTGCACGAACAAGAGGAAAGTGAAGGATAAGGATCGAGTTGTGTTTGGTGAAGCACAAAACAAAGTTGCATTGTTGACTCTACCATGGAGGAGGTTTTTGACAGACCTGGAACTTGTTCCAAACATGTCAATGCTCATCACACTTTATTGTGATAATAGTTGTATTGTGGCAAATTCCAAGGAGCCTAGAAGCCACAAACATGGAAAGCATATAGAGTGCAAGTATCATTTGATACGGGAGATTGTGCAAGGAGGAGACATGATCGTCATGCACATTGCTTCAGAGCACAATGTTGCCGATCCATTTACAAAAGCTCTCACGGCTACAGTGTTTGAGGGTCACCTGGAGAGTCTGGGTCTACGAGACATGCCACATCTAGTCTAG

Protein sequence

MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSGRSSIFPEFVDSSKHKPSEGVKMTKMPIEHSCSVPYTLLYALNPRGTFYAALRHPKGAHDAPEIDRIPFLHAVAISELNTIGGFQRKYDLHSNTYNPRWRDHPNFKWEGQGQSNNIAHNQPSSSALKLPPVTSTPIAPPTPSPVSNLDKVRKDDEIPAEASPRLAKPKVEDKDEKILETFRKVQNNTPLFNIIQQVPRYAKFLKELCTNKRKVKDKDRVVFGEAQNKVALLTLPWRRFLTDLELVPNMSMLITLYCDNSCIVANSKEPRSHKHGKHIECKYHLIREIVQGGDMIVMHIASEHNVADPFTKALTATVFEGHLESLGLRDMPHLV
Homology
[Close]
BLAST of ClCG03G011250 vs. NCBI nr
Match: KAA0046366.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 2.3e-36
Identity = 79/98 (80.61%), Postives = 84/98 (85.71%), Query Frame = 0 

Query: 269 RRFLTDLELVPNMSMLITLYCDNSCIVANSKEPRSHKHGKHIECKYHLIREIVQGGDMIV 328
           R+FL DLE+VPNMS  ITLYCDNS +VANS+EPRSHK GKHIE KYHLIREIV  GDMIV
Sbjct: 74  RKFLIDLEVVPNMSKSITLYCDNSGVVANSREPRSHKRGKHIERKYHLIREIVHQGDMIV 133

Query: 329 MHIASEHNVADPFTKALTATVFEGHLESLGLRDMPHLV 367
             IAS HNV DPFTK LTA VFEGHLESLGLRDMPHL+
Sbjct: 134 TQIASTHNVVDPFTKPLTAKVFEGHLESLGLRDMPHLI 171

[Close]
BLAST of ClCG03G011250 vs. NCBI nr
Match: KAA0060254.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 1.9e-35
Identity = 78/98 (79.59%), Postives = 84/98 (85.71%), Query Frame = 0 

Query: 269  RRFLTDLELVPNMSMLITLYCDNSCIVANSKEPRSHKHGKHIECKYHLIREIVQGGDMIV 328
            R+FL DLE+VPNMS  ITLYCDNS  VANS+EPRSHK GKHI+ KYHLIREIVQ GD+IV
Sbjct: 906  RKFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIKRKYHLIREIVQRGDVIV 965

Query: 329  MHIASEHNVADPFTKALTATVFEGHLESLGLRDMPHLV 367
              IAS HNVADPFTK LTA VFEGHLESLGLRDMPH +
Sbjct: 966  TQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHFI 1003

[Close]
BLAST of ClCG03G011250 vs. NCBI nr
Match: KAA0046416.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 3.3e-35
Identity = 79/97 (81.44%), Postives = 82/97 (84.54%), Query Frame = 0 

Query: 269 RRFLTDLELVPNMSMLITLYCDNSCIVANSKEPRSHKHGKHIECKYHLIREIVQGGDMIV 328
           R FL DLE+VPNMS  ITLYCDNS  VANS+EPRSHK GKHIE KYHLIREIV  GD+IV
Sbjct: 412 RNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIV 471

Query: 329 MHIASEHNVADPFTKALTATVFEGHLESLGLRDMPHL 366
             IAS HNVADPFTK LTA VFEGHLESLGLRDMPHL
Sbjct: 472 TQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 508

[Close]
BLAST of ClCG03G011250 vs. NCBI nr
Match: TYJ97618.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 3.3e-35
Identity = 79/97 (81.44%), Postives = 82/97 (84.54%), Query Frame = 0 

Query: 269  RRFLTDLELVPNMSMLITLYCDNSCIVANSKEPRSHKHGKHIECKYHLIREIVQGGDMIV 328
            R FL DLE+VPNMS  ITLYCDNS  VANS+EPRSHK GKHIE KYHLIREIV  GD+IV
Sbjct: 1031 RNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIV 1090

Query: 329  MHIASEHNVADPFTKALTATVFEGHLESLGLRDMPHL 366
              IAS HNVADPFTK LTA VFEGHLESLGLRDMPHL
Sbjct: 1091 TQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1127

[Close]
BLAST of ClCG03G011250 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 3.3e-35
Identity = 79/97 (81.44%), Postives = 82/97 (84.54%), Query Frame = 0 

Query: 269  RRFLTDLELVPNMSMLITLYCDNSCIVANSKEPRSHKHGKHIECKYHLIREIVQGGDMIV 328
            R FL DLE+VPNMS  ITLYCDNS  VANS+EPRSHK GKHIE KYHLIREIV  GD+IV
Sbjct: 1245 RNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIV 1304

Query: 329  MHIASEHNVADPFTKALTATVFEGHLESLGLRDMPHL 366
              IAS HNVADPFTK LTA VFEGHLESLGLRDMPHL
Sbjct: 1305 TQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1341

[Close]
BLAST of ClCG03G011250 vs. ExPASy Swiss-Prot
Match: P27527 (Ribosomal protein S19, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS19 PE=2 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-15
Identity = 40/44 (90.91%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSGRSSIFPEFVD 45
          MPRRSIWKGSFVDAFLLRMKKKRD L NRKIWS RSSI PEFVD
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDLLFNRKIWSRRSSILPEFVD 44

[Close]
BLAST of ClCG03G011250 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-07
Identity = 34/93 (36.56%), Postives = 50/93 (53.76%), Query Frame = 0 

Query: 268  WRRF-LTDLELVPNMSMLITLYCDNSCIVANSKEPRSHKHGKHIECKYHLIREIVQGGDM 327
            W +F LT + +   +   I +Y DN   ++ +  P  HK  KHI+ KYH  RE VQ   +
Sbjct: 1310 WLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVI 1369

Query: 328  IVMHIASEHNVADPFTKALTATVFEGHLESLGL 360
             + +I +E+ +AD FTK L A  F    + LGL
Sbjct: 1370 CLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]
BLAST of ClCG03G011250 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-07
Identity = 27/77 (35.06%), Postives = 39/77 (50.65%), Query Frame = 0 

Query: 287  LYCDNSCIVANSKEPRSHKHGKHIECKYHLIREIVQGGDMIVMHIASEHNVADPFTKALT 346
            +YCDN         P  H   KHI   YH IR  VQ G + V+H+++   +AD  TK L+
Sbjct: 1388 IYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLS 1447

Query: 347  ATVFEGHLESLGLRDMP 364
             T F+     +G+  +P
Sbjct: 1448 RTAFQNFASKIGVTRVP 1464

[Close]
BLAST of ClCG03G011250 vs. ExPASy Swiss-Prot
Match: P39697 (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS19 PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-07
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSGRSSIFPEFVDSS 47
           M  RS+WK  FVDAFL+   KK++  LNRKIWS RS+I PE+VDS+
Sbjct: 131 MMSRSVWKDPFVDAFLM---KKKNAALNRKIWSRRSTILPEYVDSA 173

[Close]
BLAST of ClCG03G011250 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.8e-07
Identity = 29/88 (32.95%), Postives = 42/88 (47.73%), Query Frame = 0 

Query: 276  ELVPNMSMLITLYCDNSCIVANSKEPRSHKHGKHIECKYHLIREIVQGGDMIVMHIASEH 335
            EL   +S    +YCDN         P  H   KHI   YH IR  VQ G + V+H+++  
Sbjct: 1360 ELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHD 1419

Query: 336  NVADPFTKALTATVFEGHLESLGLRDMP 364
             +AD  TK L+   F+     +G+  +P
Sbjct: 1420 QLADTLTKPLSRVAFQNFSRKIGVIKVP 1447

[Close]
BLAST of ClCG03G011250 vs. ExPASy TrEMBL
Match: A0A5A7TW60 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00780 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-36
Identity = 79/98 (80.61%), Postives = 84/98 (85.71%), Query Frame = 0 

Query: 269 RRFLTDLELVPNMSMLITLYCDNSCIVANSKEPRSHKHGKHIECKYHLIREIVQGGDMIV 328
           R+FL DLE+VPNMS  ITLYCDNS +VANS+EPRSHK GKHIE KYHLIREIV  GDMIV
Sbjct: 74  RKFLIDLEVVPNMSKSITLYCDNSGVVANSREPRSHKRGKHIERKYHLIREIVHQGDMIV 133

Query: 329 MHIASEHNVADPFTKALTATVFEGHLESLGLRDMPHLV 367
             IAS HNV DPFTK LTA VFEGHLESLGLRDMPHL+
Sbjct: 134 TQIASTHNVVDPFTKPLTAKVFEGHLESLGLRDMPHLI 171

[Close]
BLAST of ClCG03G011250 vs. ExPASy TrEMBL
Match: A0A5A7UYX7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00180 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 9.4e-36
Identity = 78/98 (79.59%), Postives = 84/98 (85.71%), Query Frame = 0 

Query: 269  RRFLTDLELVPNMSMLITLYCDNSCIVANSKEPRSHKHGKHIECKYHLIREIVQGGDMIV 328
            R+FL DLE+VPNMS  ITLYCDNS  VANS+EPRSHK GKHI+ KYHLIREIVQ GD+IV
Sbjct: 906  RKFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIKRKYHLIREIVQRGDVIV 965

Query: 329  MHIASEHNVADPFTKALTATVFEGHLESLGLRDMPHLV 367
              IAS HNVADPFTK LTA VFEGHLESLGLRDMPH +
Sbjct: 966  TQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHFI 1003

[Close]
BLAST of ClCG03G011250 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-35
Identity = 79/97 (81.44%), Postives = 82/97 (84.54%), Query Frame = 0 

Query: 269  RRFLTDLELVPNMSMLITLYCDNSCIVANSKEPRSHKHGKHIECKYHLIREIVQGGDMIV 328
            R FL DLE+VPNMS  ITLYCDNS  VANS+EPRSHK GKHIE KYHLIREIV  GD+IV
Sbjct: 1246 RNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIV 1305

Query: 329  MHIASEHNVADPFTKALTATVFEGHLESLGLRDMPHL 366
              IAS HNVADPFTK LTA VFEGHLESLGLRDMPHL
Sbjct: 1306 TQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1342

[Close]
BLAST of ClCG03G011250 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-35
Identity = 79/97 (81.44%), Postives = 82/97 (84.54%), Query Frame = 0 

Query: 269  RRFLTDLELVPNMSMLITLYCDNSCIVANSKEPRSHKHGKHIECKYHLIREIVQGGDMIV 328
            R FL DLE+VPNMS  ITLYCDNS  VANS+EPRSHK GKHIE KYHLIREIV  GD+IV
Sbjct: 1246 RNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIV 1305

Query: 329  MHIASEHNVADPFTKALTATVFEGHLESLGLRDMPHL 366
              IAS HNVADPFTK LTA VFEGHLESLGLRDMPHL
Sbjct: 1306 TQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1342

[Close]
BLAST of ClCG03G011250 vs. ExPASy TrEMBL
Match: A0A5D3BHG7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G00150 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-35
Identity = 79/97 (81.44%), Postives = 82/97 (84.54%), Query Frame = 0 

Query: 269  RRFLTDLELVPNMSMLITLYCDNSCIVANSKEPRSHKHGKHIECKYHLIREIVQGGDMIV 328
            R FL DLE+VPNMS  ITLYCDNS  VANS+EPRSHK GKHIE KYHLIREIV  GD+IV
Sbjct: 1031 RNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIV 1090

Query: 329  MHIASEHNVADPFTKALTATVFEGHLESLGLRDMPHL 366
              IAS HNVADPFTK LTA VFEGHLESLGLRDMPHL
Sbjct: 1091 TQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1127

[Close]
BLAST of ClCG03G011250 vs. TAIR 10
Match: AT5G47320.1 (ribosomal protein S19 )

HSP 1 Score: 58.9 bits (141), Expect = 9.7e-09
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSGRSSIFPEFVDSS 47
           M  RS+WK  FVDAFL+   KK++  LNRKIWS RS+I PE+VDS+
Sbjct: 131 MMSRSVWKDPFVDAFLM---KKKNAALNRKIWSRRSTILPEYVDSA 173

The following BLAST results are available for this feature:
BLAST of ClCG03G011250 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0046366.12.3e-3680.61gag/pol protein [Cucumis melo var. makuwa][more]
KAA0060254.11.9e-3579.59gag/pol protein [Cucumis melo var. makuwa][more]
KAA0046416.13.3e-3581.44gag/pol protein [Cucumis melo var. makuwa][more]
TYJ97618.13.3e-3581.44gag/pol protein [Cucumis melo var. makuwa][more]
KAA0048404.13.3e-3581.44gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of ClCG03G011250 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P275272.3e-1590.91Ribosomal protein S19, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS19 PE=2 SV... [more]
P041461.0e-0736.56Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q94HW21.4e-0735.06Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P396971.4e-0760.8740S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS1... [more]
Q9ZT946.8e-0732.95Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
BLAST of ClCG03G011250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TW601.1e-3680.61Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0078... [more]
A0A5A7UYX79.4e-3679.59Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00180... [more]
A0A5A7SMH81.6e-3581.44Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... [more]
A0A5D3CPJ61.6e-3581.44Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004... [more]
A0A5D3BHG71.6e-3581.44Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G0015... [more]
BLAST of ClCG03G011250 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G47320.19.7e-0960.87ribosomal protein S19 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..201
NoneNo IPR availablePANTHERPTHR24559:SF334SUBFAMILY NOT NAMEDcoord: 107..257
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 107..257
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 266..347
e-value: 6.31126E-24
score: 94.0721

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G011250.1ClCG03G011250.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding