ClCG03G011120 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G011120
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionGag/pol protein
LocationCG_Chr03: 20598282 .. 20607229 (+)
RNA-Seq ExpressionClCG03G011120
SyntenyClCG03G011120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCCGCCGAGATTCAATTCCCTTCAATTGGTATGAGAGCCAATCTTTGATTCTCGATTTGAATTAAAAATCTTTTTATGGTGGGTGTTTTAATTGTTCATATATGAGATATGTGAAAGTTTGCAAAATTGATTGTTTAGGCATATTTGGGCATTAGATTTTAAAGTTTTGATTAGATCATTTGTAAAACCCTCAAGGGTTAGGGTTTTCTTGTAATCTTTTTTATGCAAACATGCTGTAAATTCTTGAAAAAACGTTGGTTTTCCCGAAATATTGAAATCTAGAAAATCTGAAATTTTTTTCAAATTTGGAAATTTTGTTGTGCGTCATCTTTTTTGCTTCATCAAAGCATCTGACAAATTTCATCAAAGTATGTGCGGCTGAAATATCAAAGGATTAAATTTAGGGGTTTCAAACCCAAAATTTTGATGGCCAAAGAAGACATTGAAGACCATGATATGTCTTGGAAATTCAAATTATTGTAATTTTGATTTTTTTTTCTTTAATTTCTAGGATATGCCAAATATGCCGGTCGATTTTGCTTTATTTAATTTAATTATGCTTGCGATGTATGTTTTAAATTAAATTGAATGTTGCATAAAATATGCCATTTAGATTAAAATCCCACCATAGGTTAAGCATGTTCATGCATCTTAGTATATTATAAATGTTATATTATATGGTTTTAATACATGATAATAATTCCATGATTTATTTAATGTATCTTGATATATTAAATATATGAAATTGAAAAAGTATGATGTATGACATTAATTAAATATACAAATAATTATATTTATTAATGTTTTGTTAATTTATGATTGATTTTCATGATTTATTTAATATAAGTGTTATATTTTAAATAAAAATCAATTTGCATTGAGCATGATACATCCATAGAATAATATAATTGTTATATTATGTCATGAAATGCATGTAATAATTAAACCATAGGAAGCATGTTATAGGGCTAATCAATAAAATTCATAATCGTTATAAAATTTATGATTAGTAACTGTTAACTTATAGTTAAGAATTGCATGCAAACATAAGATCTTAGGAAATTGGTTTTAAATTGTTTAAAATTAATTTAGACCAAAGATCACATTAACTCTAATAAGATTATAACTTTGTCTTACTTTGTTTTAAAATAGTTTTAAAATATGATTAAGTAGGTGATAAGTACTTGAAAAGTGCTTATTATTCTCTCAAATTAAGGGAGTTTTATATTAGATTTCACTTGTTTGCTAGTGATTTTCAGGTTAAAACGAGGAAAATTAGAAGAAACGACTGAAAGATCAAAACCGAGCAAGAATATGGAGAAAAAGTGCTGAAAAACGCATCCTTGCTTGAAACGCATGGTGCGCCGCGACGCTGGGACGGCGCTGCCGCGGCGCTGAGGCTGAAACGCATCAGCATGGATGCAGAGCAGCAATGCAGCGCTGGGAAGGCGCTGCCTCGACGCATCCTTGAAGAACGCAAGATAGCGTCCCAGCGCTGGGACGGCGCTGCCGCGGCGCTAAAACCCGAGAGCAACTTAATTTTGGCCGCAACCCTAGCGCCGCGGCGCTATGCGTCAGCGCCTCGGCGCCAGCGTTAATTTAAACGCAATTTTTGTATTTTAGGTTAATTTTTGGGCGGCCAAACTCTATAAATTTAGGGGTTTTCAGCAACCAAAAGGGGGAAGAAATATCAAGAAGATCAAGAAAGTTGCAGAACAAGAAAACGATCCGAAAAGGTGAGAATTAAGCTAAAGTTCCAAGAGTGAGTTAGCCGCAAGGAAGAGGAAAAGAGTTCGAGATAGTTTTGGTGCCCTTTGAAGTCCGACGCGAGAGCCAAGGAGTTCGTGACGGTGCTGCCTCAATCGAAAACCTCTTTTCACTAGAGTTTCCCTATTCTCTACACTCTTTCTTTGATTCTTTTCGATCAATATGTTGATTTACGCTATGAGTGGCTAAACTCTTTGGTTTTAGGGTTTTTGATGAATTGTTTGTGAATTCATGATAAATTTATAGACTCATGGTTTTGTTCAAATAAATATGCTTTTCATTGTTATTGTATTTAATTCTTGAAGATTGGCCACCTTGATATATTAGATTAGATGTATGAATCGAGAGATTATATGTTTAATTTGATCTATAACAATGAATCGTTGTTAATCTATCACGAGAGTAGTTAGGTTTACAATGAAAGTTGCTAAAGACTAGTTTTAATGCCATGTAATTTTGTATTGGTTTTAAGAGATTAACTATCAATCAAGTTGCATGAGAAAGAGTTGTCTTTGAGAGAAGATAACTTGGAATTAAGTTTCTAGACTTAGGCATAAGAATTAAATCCATGAAATCTATAATTTTGCATGATGAAACAAACAAGGATTTGAAACCCTAGAACTCTCTTTGATTCTTGCAATTCTCCCTTTGATACTTTCTTGGTTTGATCTTTCTTTTTCCCAAAAACAAAATTTGAATTCCAATCCTCAAATAAAATTGATTTAACTCTAGAATAGCTAAATAACTTAAACCTTCCCAATTGGATCTCTAGTGGAAACGATACTCGGACTTAACCGTTTTATATTATAACTTGACCCGTACACTTGCGGTTAACACACAAAGTGACACATCAGTAGGACAAATAGGACTTTAGGCTATAAAGGAACTCTACCATTTCAGTTCTGTCAAGATTGGGAGTATTTAAGTTGACGGTTTACGGAACACCTCCTAACTAGGAACTGAATTGGAACATGTGTTGAATTAACCTAAGGCCTATTAGTATGTATTGTCACTAGGTTAATTAAATGATTTCATTTACCTATAACATTAGTGTAAAGACCTTTTATAAGAGTTAAAAGAGGCATAGACTTAGATAGATTGACTTAACTGAATTTATCTAAGTGAAATAACCCTAAGATAAGGTAGGACATTTTAGTGGGAGGAAAATTACAAAACAAGATACTTATATCAAGTTTTGCTCCTACGTCCCTGATTATTCACACCGTGAGATCTATACTCTAGCTTCGTGTCGCCCTGGAAGGGGCCTCCCTTCGAAAAGTGTTTGTATGGTTCAATAACAAGGTGAATGAAAAAATGTCTATAGTAAGTGGGAGCGGGACGCGTGTCAACGTATCCTTTGATCTCCAACCCTAGGTCGCACCGTAAGATTCTTATGATCCGCCTGCGTGTCCTACTAGAGGAACCATCCCTTCAGAGGGCCTGATCATAGGTTTCGAACACCGCAAACTCCTGAAAAGGATAGGTTTACTTAGGTTAATTTCCAACAATTATCTTTCCTAATGGTAGCTTATTGGTGCGTACCTCTAGGATCTGAAAGTGGGAGGGTTACACTTACAGGGATGAGTTAAGAGTTAACGAATCCTTGACCGAACAATGGTGGCTAATGTCTATAGGAATATGAGTTATTCTAGAATTAGAATTAGCTGAGAATTGTCTCATTTCAAAGGAGAAGTGACTAATCACTCTTTGGTGGCTGTTGCTCTAAACCTCTGAAGCATCGTTGCAAAAACTAAATCAATACTTTATTAGGGTTTCTTTGATTGCTTGTTTTTGCTGAATTGATTGAATTACTTGCAATTTTGTTTGCTTGTGTAATGGGTTAAGGCAAAGATAACTAAAACGGTTAATTATTTGTAATTCAGCATGTCTTCCTCAATGGTCGCACTACTTAAAAAGGAAAAACTAACTGATGAGAACTACGCAACGTGAAAATCTAACCTAAATACAATTCTGGTTATAGATGATCTACGGTTTGTCTTAACGGAGGAGTGTCCTTCTATCCCCGCTTGTAATGCATCCCAATTTGTTAGGGATGCATATGACTATTGGACAAAGGCCAATGACAAGGCTCGAGTTTATATCTTGGCGATTTTGTCTGACGTACTCAACAAGAAACATGAGGCCATGATGAATGCACGACAGATCATGGAGTCCCTCCAGGAAATTTTTGGACAACTATCCTCACAGATCCGACATGAGGCCCTCAAGTACGTTTATAATGCACGTATGATAGTCCAATTCAATGTTTCTGAAATGAACGGAGTGGTCATTGACGAGTAGGGTTAGGTGTCTTTTATTCTAGAATCTCTTCCGAAGAGCTTTCTCCAATTTCGTAGCAATGCGGTTATCGAAGGGAATTGAATCCCGACGGAAGCGTGTGATCGTGTTCTTTCATTTATTGAAAGAATTAAAAATACAAAAAATAAAGAAAAGGTTAAGCATCATACCTTTGCCAATCCATAATTCTCGAACCAATAGTCTTCTCTTTGTAGTCTTCCTTTTCCAAGAGATCTTCCTTGCTATGACTCTGGCAAGGATCAGGTTTGTGGGAACTGCTTCTTTGAAATAATGGGAATAAGAATTTTCTTAGAATTTTTCTAAGAAAATTGGGAGGATTAGTAGAAGAAGATTTTTAAAGTAATCGTAGAGATTATTCTTTTAAAGAGTGTGTTCTATGAAAGCTCCCAAGGGCCCTATTTATAAAACTCTAGGAGTTACTCTTAATCCTATTAGGATAAACCCTCTGCATAGATTTTAAATAAAATATTTAATAATATCCAATATTAATAAATATCTACCCAAATAATATCTCATATTAAATGGTTTAAAATATTTAAATCTTATTTAAATATTTATTTTTTGCAGAATCCTTGATTTGGATCTCATCCAAATTAAATAATTAATTATTTGAATCCAATTCAAATCAATTAATTAATTCTTCCTCTATTTATTTTATGTAGAATCTTTAATTTAGATCTCATCCAATTTTAATAATTAATTATTTGAATCAAATTCAAATTAACTAATTAATTCTCCCTCTATCTTTTTATATGAATTTTATCTAAATAAATAATTAATTATTTGAATTATATTCAAATAAATTAATTCTTTATATTATAAAGTTATAATTTGAATCACATTCAAATAAAATTTATAATAAATCACGCAATTAATTGTATCCAATACAATTAATATTTTAAATTTGAACATTTAAAATTTTTCTTTCAACATAGTTGATCATTGTTGGTCCGTAGTGAGCTAGCAAAATGGAACTACAGATCAGAAGCTCCAACTATATGAGATTAATCGGCTAAGCTCATTAACCATATTAATCAATATCACTACAACAATTTTGGCCTCACAAGTTTTTTGTTTTGTTAATGGTCATGGAAAGATACCATAAAAAAAACCTTAATTTAGAGTTTAAAATTATTATTAATTGAAATTTACATTTTTTGATGGTCTTAAAACATAAAAAAAGATTTATATTAAACTTGATGTGCATGTACATTCGCCCTTTTCTCCTTAGGTTTTGAAACTCACATTGTTCATCTAAGGCTACTTCACATTCGCACCGTCCTTCTCCCACGTACCATTGTTCGCCAGATCTCGCCTTATCGTTTGTTTGTCCGTCATCGTGGTAGCAGCAATTCGTCCGCCATTCGTGGTAGCTGCTGTTTGTTCGCTGGTCGTGCGCCTGCCGTTCATCCGTTGGTCGTGCCTCCGCCGTTCGTTCGCTGGTCCGCGATGGCACAATGCTCCATGCTCACCTCATCCGTGTTGGGTTCAAATAAGACATCTTTGTTCAAACCTTGCTAGTCGACATGTACTCCAAGTGCTATGACTTTCCTACTTCACGCCAAGTGTTCGACGAAATGGCTACAAAAAGTGTCATCTCTTGGAATTCTATGATTGTCGCTTATTCTATGATCATCTCGACTTTTGTAAGCTTATTGTCAGGTTTTGCTAACCCAACTCATGGATATCTCTTGCAGGGGCTTTTGGTACATGGTTGCATTACCAAATTTCAACTTCTTGATGACACGCCGGTGGCAAATTCTCTTATGCAAATGTATGTAAACTTTCGTCAAATTGATTCTGCTTGCTCTATTTTTTATGCCACTAGTGACAAGACAGTAATTTCTTGGACAATAATGCTTGGTCGTTACTTGAGCTGTATTTGGTTTGTTATCTAAAAAAGCATTAATTTCAAAAATGGTTTTAATATTGTTTACAGCTTCAGAATTGGATATTGAGTTGGTTTATCAACTAATTATTTGGGAGGGTACTGTGGAAGCTCACTTGATTGGTTCAATTTGTATGAAATCTCAATTTTATCCAATTATTTGTTGGAACATTCCAGGTGACATTTATTTATTTATTTATTTTTAAATAGGATTGCAAATCAATCTGTATTTTATGGTTTCAAATGATTTTCATTACAGGGAGATTTATGGGTGGTCCAGTTACTTGTGGTATGATACGAGGACTTGACGAATATGATACAGAAAATTTTGCTCCTCTTATTTATCAAAGTACTTAATTAATTGCATTATTATGTTTTCTATATACAAATCGTAAATATTAATAATGAGTTAATTATATGTTATCTATTTTATTACATGTTTCTTTTTTACGAAAAATTTATACAGCCTTTCGTGAAAGATTTATTCGCTCCATGATATACTTCAAAGATGATTTAGAGATTTCTTTCACTCTGAGGTTATTTCCAGCATAAGTAGGGTTAAAAGTTATTTTACATTAGGTATATTTATTATGTTAACACTCCAATATCTTTGTATGTTTGTTTTGTTTAGGGCATAAGAATGTTTTATGCTCGAACCAGTACACGAACTCGACCTGTTACTTGGGTCCCCGTTAAAGTAAGCACTTCAATTTCGATGTAATGATATTATACTTTTAATCATGGTTTATTCTAACATGGGTTAAAATATATGTGTACATATATAGTGTGCTAAACAATCGGGTAGTACGGAGTGTGGGTATTATACTATAAAGTTCATACACAACATAGTAACTCGTAGGAGCACAATAATTACAGACGTGGTATGCATTTGCTTAAACCATATTGTTGAACTATAGTTTTTACCCTTAATATAATTGTTTTTAATCAATACAATATGGTTTGTTTACTTGCAGTTGATGAGACAAACACTTTAAAGTCAATTGGAATTAGACACGGTGAGAGTTGGCGATTGTGACTTTATAGGACGTTACATTTGAGGATTGTGACTTCACAGTTTATTGTTAGGTTTAAGGACAAAGTTTTAGTTTTGATAGGTTTAAGGACAAGCGATTTGATGTCAAGTTGCATAAAATGCTGCCCTAGACAAATTTCGAACTCCGCCACTTTTTAGGAGTTGGTTTTGGCTTGCCTTCCTTCAAGTCATCCAAAGGATTCAAATCTTTGGTAGGATTATGCCTTACACGTTTCAGTTTTAAGATACTAACTATTTGTACAAAAAAGTATTTTACTAGTTGATTAATGAAAATTAATTGATTCATTATGTTGTGCTATGATGTTTCAATGAGATGGTTTAATGTTGTCAATTTAGATATGTGATTGAAATTTTGGAGTTATGTCGTTGTTGAAGTTGTGTAGTCACGTAGTTGATGGTGTTAGTAGAAACGATTTGGTGTAATTATCTGATTCTGATGGAGCAATGTGATTGAAAAATTGGAGTTGTATAGCTAGTGGTTTGCAGGAGATGTGTAAGGTTGTTTCACAAGTTGTTTGGAGAGAATGCAAATTGCAGGTATAAAACATGTTTGGAGTCGATTACAGGTTGCTTGTGGGTCACATTGACCCATATCGTTTTTTTTTTTCTCAAATTGTTATAGTTGACGGCTAAAAAATGTCAATAAAAACATACCGTAATAAATTTTTCTTGAGGGCCAAAAAACATCAATAAAAAAGATTTTCTTAATGGTTATTTACAAATACTTGATGTACAAAAAATATCAATAATAATCTACTTTGACATTAAAAAAGTATCAACAAAAGTATCTATCTTTATGGTCAAGCTCCAATACTTTATAGGAAAAAACATCAACTTAACCTATCTTGATGGCCAAAACCGACGTTTTTTGGCCATTAAGAAAACTATCTTTCTTGATAGTCAGGCTCCAAGGCAAAAAACTTCAACCTAACCTATCTTGATGGCCAAAACCATCAAGATAAGGTTTGTGTTGACAGTTTTTGGCCATCAAGAAAACTATCTTTCTTGATGGTCAGACTTTCTTGTTGTTTTTTGGCCATCAAAATATGTCTTTCTTGATTTTTTTTTTTTTTTTTTTTTTTGCCATCAATAAAAGCCAAATTCGTTATCTGTGGGTACAATCCACTAAAGACCCACAGCTGCACTCTTTTAATTATAGATATATTTTTGTGTCCATGGATATAGACCAATAATAGTAAATTAGTATTTTCACAAATGTTTGTAACACCTGTTGGGTGAAATTACCGTTTTACCCCTAGGTTACTTCTAAATCCTTAAGTACCAGTGCTAATCTAATGAACAACTTGTTTATGGTCCAACCATTAAACAGAAACCCCTCTCGGGCCAATGAGAAGGTAGGGTCCTTTGTTCAAGTCTCGGAGCCACCACTTAAGGGAACACTTATCTACTTACCCTAAAAATACGAATGAGTGAATTCCATCTTGTATAATTATGTCCCCAGCTCCCCGCTTGGTCTTGTCCCCAAGATGGTTGGCATATTGAGTCGGAAAATGACCACTCTTACCCATACAAATTAAAGGACAATCCCTCATGGATAGGAGTTCATAATATACTCAGGATTAAGACTAAGTTGGCTAGGTCACCCTATTGAAATAGAAACCTAACTAGTCAATGGAGTTACATCTAGTGATTACTATTTGGTGGTCCGGTCTTATGCAAACTCATTGCATAGGATACCTTCAACTCGCATGTCATGTACATGAACGCATTAGATCATTGTATTTGTATCAAATACAAAGTGGACCATATTGTAAGCCCCATACTTAATCTTGTGAGAATGCAAGATAAGAAGGGACCAAGAGATGGACGCTTGGGTAGGAGTAGTTGGCTGGAATGTGATTGGGGCGGAAAAATGACTAAGTACCAGCTATGCGTTGGTGGCAACACGCCTTGA

mRNA sequence

ATGCTTCCGCCGAGATTCAATTCCCTTCAATTGATCAAAACCGAGCAAGAATATGGAGAAAAAGTGCTGAAAAACGCATCCTTGCTTGAAACGCATGGTGCGCCGCGACGCTGGGACGGCGCTGCCGCGGCGCTGAGGCTGAAACGCATCAGCATGGATGCAGAGCAGCAATGCAGCGCTGGGAAGGCGCTGCCTCGACGCATCCTTGAAGAACGCAAGATAGCGTCCCAGCGCTGGGACGGCGCTGCCGCGGCGCTAAAACCCGAGAGCAACTTAATTTTGGCCGCAACCCTAGCGCCGCGGCGCTATGCGTCAGCGCCTCGGCGCCAGCATGATCTACGGTTTGTCTTAACGGAGGAGTGTCCTTCTATCCCCGCTTGTAATGCATCCCAATTTGTTAGGGATGCATATGACTATTGGACAAAGGCCAATGACAAGGCTCGAGTTTATATCTTGGCGATTTTGTCTGACGTACTCAACAAGAAACATGAGGCCATGATGAATGCACGACAGATCATGGAGTCCCTCCAGGAAATTTTTGGACAACTATCCTCACAGATCCGACATGAGGCCCTCAATCTTCCTTTTCCAAGAGATCTTCCTTGCTATGACTCTGGCAAGGATCAGATCTCGCCTTATCGTTTGTTTGTCCGTCATCGTGGTAGCAGCAATTCGTCCGCCATTCGTGGTAGCTGCTGTTTGTTCGCTGGTCGTGCGCCTGCCGTTCATCCGTTGGTCGTGCCTCCGCCGTTCGTTCGCTGTGTTCGACGAAATGGCTACAAAAAGGGCTTTTGGTACATGGTTGCATTACCAAATTTCAACTTCTTGATGACACGCCGGTGGCAAATTCTCTTATGCAAATCTTCAGAATTGGATATTGAGTTGGTTTATCAACTAATTATTTGGGAGGGTACTGTGGAAGCTCACTTGATTGGTTCAATTTGTATGAAATCTCAATTTTATCCAATTATTTGTTGGAACATTCCAGGGAGATTTATGGGTGGTCCAGTTACTTGTGGTATGATACGAGGACTTGACGAATATGATACAGAAAATTTTGCTCCTCTTATTTATCAAAGCTCCAAGGCAAAAAACTTCAACCTAACCTATCTTGATGGCCAAAACCATCAAGATAAGGATACCTTCAACTCGCATGTCATGTACATGAACGCATTAGATCATTGTATTTGTATCAAATACAAAGTGGACCATATTGTAAGCCCCATACTTAATCTTGTGAGAATGCAAGATAAGAAGGGACCAAGAGATGGACGCTTGGGTAGGAGTAGTTGGCTGGAATGTGATTGGGGCGGAAAAATGACTAAGTACCAGCTATGCGTTGGTGGCAACACGCCTTGA

Coding sequence (CDS)

ATGCTTCCGCCGAGATTCAATTCCCTTCAATTGATCAAAACCGAGCAAGAATATGGAGAAAAAGTGCTGAAAAACGCATCCTTGCTTGAAACGCATGGTGCGCCGCGACGCTGGGACGGCGCTGCCGCGGCGCTGAGGCTGAAACGCATCAGCATGGATGCAGAGCAGCAATGCAGCGCTGGGAAGGCGCTGCCTCGACGCATCCTTGAAGAACGCAAGATAGCGTCCCAGCGCTGGGACGGCGCTGCCGCGGCGCTAAAACCCGAGAGCAACTTAATTTTGGCCGCAACCCTAGCGCCGCGGCGCTATGCGTCAGCGCCTCGGCGCCAGCATGATCTACGGTTTGTCTTAACGGAGGAGTGTCCTTCTATCCCCGCTTGTAATGCATCCCAATTTGTTAGGGATGCATATGACTATTGGACAAAGGCCAATGACAAGGCTCGAGTTTATATCTTGGCGATTTTGTCTGACGTACTCAACAAGAAACATGAGGCCATGATGAATGCACGACAGATCATGGAGTCCCTCCAGGAAATTTTTGGACAACTATCCTCACAGATCCGACATGAGGCCCTCAATCTTCCTTTTCCAAGAGATCTTCCTTGCTATGACTCTGGCAAGGATCAGATCTCGCCTTATCGTTTGTTTGTCCGTCATCGTGGTAGCAGCAATTCGTCCGCCATTCGTGGTAGCTGCTGTTTGTTCGCTGGTCGTGCGCCTGCCGTTCATCCGTTGGTCGTGCCTCCGCCGTTCGTTCGCTGTGTTCGACGAAATGGCTACAAAAAGGGCTTTTGGTACATGGTTGCATTACCAAATTTCAACTTCTTGATGACACGCCGGTGGCAAATTCTCTTATGCAAATCTTCAGAATTGGATATTGAGTTGGTTTATCAACTAATTATTTGGGAGGGTACTGTGGAAGCTCACTTGATTGGTTCAATTTGTATGAAATCTCAATTTTATCCAATTATTTGTTGGAACATTCCAGGGAGATTTATGGGTGGTCCAGTTACTTGTGGTATGATACGAGGACTTGACGAATATGATACAGAAAATTTTGCTCCTCTTATTTATCAAAGCTCCAAGGCAAAAAACTTCAACCTAACCTATCTTGATGGCCAAAACCATCAAGATAAGGATACCTTCAACTCGCATGTCATGTACATGAACGCATTAGATCATTGTATTTGTATCAAATACAAAGTGGACCATATTGTAAGCCCCATACTTAATCTTGTGAGAATGCAAGATAAGAAGGGACCAAGAGATGGACGCTTGGGTAGGAGTAGTTGGCTGGAATGTGATTGGGGCGGAAAAATGACTAAGTACCAGCTATGCGTTGGTGGCAACACGCCTTGA

Protein sequence

MLPPRFNSLQLIKTEQEYGEKVLKNASLLETHGAPRRWDGAAAALRLKRISMDAEQQCSAGKALPRRILEERKIASQRWDGAAAALKPESNLILAATLAPRRYASAPRRQHDLRFVLTEECPSIPACNASQFVRDAYDYWTKANDKARVYILAILSDVLNKKHEAMMNARQIMESLQEIFGQLSSQIRHEALNLPFPRDLPCYDSGKDQISPYRLFVRHRGSSNSSAIRGSCCLFAGRAPAVHPLVVPPPFVRCVRRNGYKKGFWYMVALPNFNFLMTRRWQILLCKSSELDIELVYQLIIWEGTVEAHLIGSICMKSQFYPIICWNIPGRFMGGPVTCGMIRGLDEYDTENFAPLIYQSSKAKNFNLTYLDGQNHQDKDTFNSHVMYMNALDHCICIKYKVDHIVSPILNLVRMQDKKGPRDGRLGRSSWLECDWGGKMTKYQLCVGGNTP
Homology
[Close]
BLAST of ClCG03G011120 vs. NCBI nr
Match: KAA0026233.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 2.8e-23
Identity = 66/135 (48.89%), Postives = 92/135 (68.15%), Query Frame = 0 

Query: 64  LPRRILEERKIASQRWDGAAAALKPESNLILAATLAPRRYASAPRRQH------DLRFVL 123
           L ++ LEE ++A + +D  ++A     N++ A  L    YAS     +      DLRFVL
Sbjct: 45  LNQKELEENEVARKSYDMLSSA---TLNMLAADKLNGNNYASWKNTINIVLIIDDLRFVL 104

Query: 124 TEECPSIPACNASQFVRDAYDYWTKANDKARVYILAILSDVLNKKHEAMMNARQIMESLQ 183
            E+CP +PA NA++ VR+ Y+ W KAN+KAR YILA LS+VL KKHE+M+ AR+IM+SLQ
Sbjct: 105 VEDCPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 164

Query: 184 EIFGQLSSQIRHEAL 193
           E+FGQ S QI+H+AL
Sbjct: 165 EMFGQASYQIKHDAL 176

[Close]
BLAST of ClCG03G011120 vs. NCBI nr
Match: TYK07761.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 3.6e-23
Identity = 69/164 (42.07%), Postives = 96/164 (58.54%), Query Frame = 0 

Query: 91  NLILAATLAPRRYASAPRRQH------DLRFVLTEECPSIPACNASQFVRDAYDYWTKAN 150
           N++ A  L    YAS     +      DLRFVL EECP +PA NA++ VR+ Y+ W KAN
Sbjct: 7   NMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKAN 66

Query: 151 DKARVYILAILSDVLNKKHEAMMNARQIMESLQEIFGQLSSQIRHEALNLPFPRDLPCYD 210
           +KAR YILA LS+VL KKHE+M+ AR+IM+SLQE+FGQ S QI+H+AL   +   +    
Sbjct: 67  EKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGA 126

Query: 211 SGKDQISPYRLFVRHRGSSNSSAI--------RGSCCLFAGRAP 241
           S ++ +    + V    +  + A+        RG CC F  + P
Sbjct: 127 SVREHV--LNMMVHFNVAEMNGAVIDEARTEGRGKCCYFHKKVP 168

[Close]
BLAST of ClCG03G011120 vs. NCBI nr
Match: XP_038881627.1 (uncharacterized protein LOC120073091 [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 8.0e-23
Identity = 60/81 (74.07%), Postives = 67/81 (82.72%), Query Frame = 0 

Query: 112 DLRFVLTEECPSIPACNASQFVRDAYDYWTKANDKARVYILAILSDVLNKKHEAMMNARQ 171
           DLRFVLTEECP +PA N+SQ ++DAYD WTKAN KARVYIL  LSDVL KKHEAMM A Q
Sbjct: 33  DLRFVLTEECPPVPARNSSQALKDAYDRWTKANGKARVYILTSLSDVLTKKHEAMMTAYQ 92

Query: 172 IMESLQEIFGQLSSQIRHEAL 193
           IMESLQE+FGQ S++I  E L
Sbjct: 93  IMESLQEMFGQPSAKIWPETL 113

[Close]
BLAST of ClCG03G011120 vs. NCBI nr
Match: KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 1.4e-22
Identity = 55/81 (67.90%), Postives = 68/81 (83.95%), Query Frame = 0 

Query: 112 DLRFVLTEECPSIPACNASQFVRDAYDYWTKANDKARVYILAILSDVLNKKHEAMMNARQ 171
           DLRFVL EECP +PA NA+Q VR+ Y+ W KAN+KAR YILA LS+VL KKHE+M+ AR+
Sbjct: 34  DLRFVLVEECPQVPAANATQTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTARE 93

Query: 172 IMESLQEIFGQLSSQIRHEAL 193
           IM+SLQE+FGQ S QI+H+AL
Sbjct: 94  IMDSLQEMFGQASYQIKHDAL 114

[Close]
BLAST of ClCG03G011120 vs. NCBI nr
Match: TYK21330.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 1.4e-22
Identity = 55/81 (67.90%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 112 DLRFVLTEECPSIPACNASQFVRDAYDYWTKANDKARVYILAILSDVLNKKHEAMMNARQ 171
           +LRFVL EECP +P+ NASQ V+DAYD WTK NDKAR+YIL+ +SD+LNKKHE M+ ARQ
Sbjct: 34  ELRFVLIEECPPLPSQNASQSVKDAYDRWTKVNDKARLYILSSMSDILNKKHEIMVTARQ 93

Query: 172 IMESLQEIFGQLSSQIRHEAL 193
           IM+SL+E+FGQ S QI+ EA+
Sbjct: 94  IMDSLREMFGQSSIQIKQEAI 114

[Close]
BLAST of ClCG03G011120 vs. ExPASy TrEMBL
Match: A0A5A7SNP8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002160 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-23
Identity = 66/135 (48.89%), Postives = 92/135 (68.15%), Query Frame = 0 

Query: 64  LPRRILEERKIASQRWDGAAAALKPESNLILAATLAPRRYASAPRRQH------DLRFVL 123
           L ++ LEE ++A + +D  ++A     N++ A  L    YAS     +      DLRFVL
Sbjct: 45  LNQKELEENEVARKSYDMLSSA---TLNMLAADKLNGNNYASWKNTINIVLIIDDLRFVL 104

Query: 124 TEECPSIPACNASQFVRDAYDYWTKANDKARVYILAILSDVLNKKHEAMMNARQIMESLQ 183
            E+CP +PA NA++ VR+ Y+ W KAN+KAR YILA LS+VL KKHE+M+ AR+IM+SLQ
Sbjct: 105 VEDCPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 164

Query: 184 EIFGQLSSQIRHEAL 193
           E+FGQ S QI+H+AL
Sbjct: 165 EMFGQASYQIKHDAL 176

[Close]
BLAST of ClCG03G011120 vs. ExPASy TrEMBL
Match: A0A5D3C7A1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00350 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.7e-23
Identity = 69/164 (42.07%), Postives = 96/164 (58.54%), Query Frame = 0 

Query: 91  NLILAATLAPRRYASAPRRQH------DLRFVLTEECPSIPACNASQFVRDAYDYWTKAN 150
           N++ A  L    YAS     +      DLRFVL EECP +PA NA++ VR+ Y+ W KAN
Sbjct: 7   NMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKAN 66

Query: 151 DKARVYILAILSDVLNKKHEAMMNARQIMESLQEIFGQLSSQIRHEALNLPFPRDLPCYD 210
           +KAR YILA LS+VL KKHE+M+ AR+IM+SLQE+FGQ S QI+H+AL   +   +    
Sbjct: 67  EKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGA 126

Query: 211 SGKDQISPYRLFVRHRGSSNSSAI--------RGSCCLFAGRAP 241
           S ++ +    + V    +  + A+        RG CC F  + P
Sbjct: 127 SVREHV--LNMMVHFNVAEMNGAVIDEARTEGRGKCCYFHKKVP 168

[Close]
BLAST of ClCG03G011120 vs. ExPASy TrEMBL
Match: A0A5A7V6N0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G00160 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.6e-23
Identity = 55/81 (67.90%), Postives = 68/81 (83.95%), Query Frame = 0 

Query: 112 DLRFVLTEECPSIPACNASQFVRDAYDYWTKANDKARVYILAILSDVLNKKHEAMMNARQ 171
           DLRFVL EECP +PA NA+Q VR+ Y+ W KAN+KAR YILA LS+VL KKHE+M+ AR+
Sbjct: 34  DLRFVLVEECPQVPAANATQTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTARE 93

Query: 172 IMESLQEIFGQLSSQIRHEAL 193
           IM+SLQE+FGQ S QI+H+AL
Sbjct: 94  IMDSLQEMFGQASYQIKHDAL 114

[Close]
BLAST of ClCG03G011120 vs. ExPASy TrEMBL
Match: A0A5D3DCZ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68479G00110 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.6e-23
Identity = 55/81 (67.90%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 112 DLRFVLTEECPSIPACNASQFVRDAYDYWTKANDKARVYILAILSDVLNKKHEAMMNARQ 171
           +LRFVL EECP +P+ NASQ V+DAYD WTK NDKAR+YIL+ +SD+LNKKHE M+ ARQ
Sbjct: 34  ELRFVLIEECPPLPSQNASQSVKDAYDRWTKVNDKARLYILSSMSDILNKKHEIMVTARQ 93

Query: 172 IMESLQEIFGQLSSQIRHEAL 193
           IM+SL+E+FGQ S QI+ EA+
Sbjct: 94  IMDSLREMFGQSSIQIKQEAI 114

[Close]
BLAST of ClCG03G011120 vs. ExPASy TrEMBL
Match: A0A5A7VAN8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00280 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.7e-23
Identity = 60/99 (60.61%), Postives = 73/99 (73.74%), Query Frame = 0 

Query: 112 DLRFVLTEECPSIPACNASQFVRDAYDYWTKANDKARVYILAILSDVLNKKHEAMMNARQ 171
           DLRFVL EECP +P  NASQ VRDAYD WTKANDKAR+YIL  +SD+L+KKHE M+ A Q
Sbjct: 34  DLRFVLIEECPPLPTKNASQSVRDAYDCWTKANDKARLYILTSMSDILSKKHEIMVTAHQ 93

Query: 172 IMESLQEIFGQLSSQIRHEALNLPFPRDLPCYDSGKDQI 211
           IM+SL+E+FGQ S  I+ EA N+   R      SG ++I
Sbjct: 94  IMDSLREMFGQSSIHIKQEA-NVVHSRRFAPSSSGSEKI 131

The following BLAST results are available for this feature:
BLAST of ClCG03G011120 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0026233.12.8e-2348.89gag/pol protein [Cucumis melo var. makuwa][more]
TYK07761.13.6e-2342.07gag/pol protein [Cucumis melo var. makuwa][more]
XP_038881627.18.0e-2374.07uncharacterized protein LOC120073091 [Benincasa hispida][more]
KAA0061339.11.4e-2267.90gag/pol protein [Cucumis melo var. makuwa][more]
TYK21330.11.4e-2267.90gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of ClCG03G011120 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG03G011120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SNP81.3e-2348.89Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00216... [more]
A0A5D3C7A11.7e-2342.07Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G003... [more]
A0A5A7V6N06.6e-2367.90Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G0016... [more]
A0A5D3DCZ26.6e-2367.90Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68479G00... [more]
A0A5A7VAN88.7e-2360.61Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G0028... [more]
BLAST of ClCG03G011120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G011120.2ClCG03G011120.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding