ClCG03G010906 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G010906
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Transposon Tf2-1 polyprotein
Location	CG_Chr03: 20049292 .. 20049522 (-)
RNA-Seq Expression	ClCG03G010906
Synteny	ClCG03G010906

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCATCTACGATCTGCCGAAGTCCAATGGGTACAATTCCATCCTTGTTGTGGTCGATTGGCTTTCCAAATACGCTCACTTTCTTGCATTAAAATACCCCTACACTGCTGTATTAGTAGCTGCCCTGATTTTAAAAGAAATTGTTCGCTTACACGGGGTGCCTCGAAGTGTTGTATCTGATCGAGACAATATCTTCACCAGTTTATTTTGGGAAGAGCTCTTTTAG

mRNA sequence

ATGGATTTCATCTACGATCTGCCGAAGTCCAATGGGTACAATTCCATCCTTGTTGTGGTCGATTGGCTTTCCAAATACGCTCACTTTCTTGCATTAAAATACCCCTACACTGCTGTATTAGTAGCTGCCCTGATTTTAAAAGAAATTGTTCGCTTACACGGGGTGCCTCGAAGTGTTGTATCTGATCGAGACAATATCTTCACCAGTTTATTTTGGGAAGAGCTCTTTTAG

Coding sequence (CDS)

ATGGATTTCATCTACGATCTGCCGAAGTCCAATGGGTACAATTCCATCCTTGTTGTGGTCGATTGGCTTTCCAAATACGCTCACTTTCTTGCATTAAAATACCCCTACACTGCTGTATTAGTAGCTGCCCTGATTTTAAAAGAAATTGTTCGCTTACACGGGGTGCCTCGAAGTGTTGTATCTGATCGAGACAATATCTTCACCAGTTTATTTTGGGAAGAGCTCTTTTAG

Protein sequence

MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF

Homology

[Close]

BLAST of ClCG03G010906 vs. NCBI nr
Match: PNY03372.1 (hypothetical protein L195_g026699 [Trifolium pratense])

HSP 1 Score: 113.2 bits (282), Expect = 9.7e-22
Identity = 51/76 (67.11%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1   MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVV 60
           MDFI +LPKSNGY +ILVVVD LSKY+HF+ LK+P+TA  +A++ +KEIVRLHGVP+S++
Sbjct: 175 MDFITNLPKSNGYEAILVVVDRLSKYSHFVPLKHPFTARSIASIFVKEIVRLHGVPKSIL 234

Query: 61  SDRDNIFTSLFWEELF 77
           SDRD +F S+FW+ELF
Sbjct: 235 SDRDPLFVSIFWKELF 250

[Close]

BLAST of ClCG03G010906 vs. NCBI nr
Match: PNX81711.1 (transposon Tf2-1 polyprotein [Trifolium pratense])

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 51/76 (67.11%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1   MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVV 60
           MDFI +LPKSNGY +ILVVVD LSKY+HF+ LK+P+TA  +A++ +KEIVRLHGVP S++
Sbjct: 175 MDFITNLPKSNGYEAILVVVDRLSKYSHFVPLKHPFTARSIASIFVKEIVRLHGVPESIL 234

Query: 61  SDRDNIFTSLFWEELF 77
           SDRD +F S+FW+ELF
Sbjct: 235 SDRDPLFVSIFWKELF 250

[Close]

BLAST of ClCG03G010906 vs. NCBI nr
Match: CAA7053500.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 111.7 bits (278), Expect = 2.8e-21
Identity = 50/76 (65.79%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1   MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVV 60
           MDF+  LP+S+G+N+ILVVVD LSKYAHFL LK+P+TA  VA + ++E+VRLHG PR++V
Sbjct: 44  MDFVKGLPRSDGFNAILVVVDRLSKYAHFLGLKHPFTATDVALMFIREVVRLHGFPRTIV 103

Query: 61  SDRDNIFTSLFWEELF 77
           SDRD +FTS FW+ELF
Sbjct: 104 SDRDKVFTSNFWKELF 119

[Close]

BLAST of ClCG03G010906 vs. NCBI nr
Match: KZV21584.1 (peroxidase 64 [Dorcoceras hygrometricum])

HSP 1 Score: 111.7 bits (278), Expect = 2.8e-21
Identity = 52/76 (68.42%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 1   MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVV 60
           MDFI  LPKS G++ ILVVVD LSKY HF+ LK+PYTA +VA   +KE+VRLHGVPRS+V
Sbjct: 775 MDFITGLPKSRGFDVILVVVDRLSKYGHFIMLKHPYTAHMVADKFVKEVVRLHGVPRSIV 834

Query: 61  SDRDNIFTSLFWEELF 77
           SDRD+IF S+FW+E+F
Sbjct: 835 SDRDSIFMSIFWQEIF 850

[Close]

BLAST of ClCG03G010906 vs. NCBI nr
Match: KAD5802917.1 (hypothetical protein E3N88_14277 [Mikania micrantha])

HSP 1 Score: 111.7 bits (278), Expect = 2.8e-21
Identity = 52/76 (68.42%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1   MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVV 60
           MDFI  LP S G+N ILVVVD LSKYAHFL LK+PYTA  VA L +KEI+RLHG+P+S+V
Sbjct: 877 MDFIVGLPPSKGFNVILVVVDRLSKYAHFLLLKHPYTAKTVAELFIKEIIRLHGIPKSIV 936

Query: 61  SDRDNIFTSLFWEELF 77
           SDRD +F S FW+E+F
Sbjct: 937 SDRDPVFLSKFWQEIF 952

[Close]

BLAST of ClCG03G010906 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.8e-09
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 1    MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVV 60
            MDFI  LP+S+GYN++ VVVD  SK A  +      TA   A +  + ++   G P+ ++
Sbjct: 989  MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048

Query: 61   SDRDNIFTSLFWEE 75
            +D D+IFTS  W++
Sbjct: 1049 ADNDHIFTSQTWKD 1062

[Close]

BLAST of ClCG03G010906 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.8e-09
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 1    MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVV 60
            MDFI  LP+S+GYN++ VVVD  SK A  +      TA   A +  + ++   G P+ ++
Sbjct: 989  MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048

Query: 61   SDRDNIFTSLFWEE 75
            +D D+IFTS  W++
Sbjct: 1049 ADNDHIFTSQTWKD 1062

[Close]

BLAST of ClCG03G010906 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.8e-09
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 1    MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVV 60
            MDFI  LP+S+GYN++ VVVD  SK A  +      TA   A +  + ++   G P+ ++
Sbjct: 989  MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048

Query: 61   SDRDNIFTSLFWEE 75
            +D D+IFTS  W++
Sbjct: 1049 ADNDHIFTSQTWKD 1062

[Close]

BLAST of ClCG03G010906 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.8e-09
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 1    MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVV 60
            MDFI  LP+S+GYN++ VVVD  SK A  +      TA   A +  + ++   G P+ ++
Sbjct: 989  MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048

Query: 61   SDRDNIFTSLFWEE 75
            +D D+IFTS  W++
Sbjct: 1049 ADNDHIFTSQTWKD 1062

[Close]

BLAST of ClCG03G010906 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.8e-09
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 1    MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVV 60
            MDFI  LP+S+GYN++ VVVD  SK A  +      TA   A +  + ++   G P+ ++
Sbjct: 989  MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048

Query: 61   SDRDNIFTSLFWEE 75
            +D D+IFTS  W++
Sbjct: 1049 ADNDHIFTSQTWKD 1062

[Close]

BLAST of ClCG03G010906 vs. ExPASy TrEMBL
Match: A0A2K3NJZ4 (Integrase catalytic domain-containing protein OS=Trifolium pratense OX=57577 GN=L195_g026699 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.7e-22
Identity = 51/76 (67.11%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1   MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVV 60
           MDFI +LPKSNGY +ILVVVD LSKY+HF+ LK+P+TA  +A++ +KEIVRLHGVP+S++
Sbjct: 175 MDFITNLPKSNGYEAILVVVDRLSKYSHFVPLKHPFTARSIASIFVKEIVRLHGVPKSIL 234

Query: 61  SDRDNIFTSLFWEELF 77
           SDRD +F S+FW+ELF
Sbjct: 235 SDRDPLFVSIFWKELF 250

[Close]

BLAST of ClCG03G010906 vs. ExPASy TrEMBL
Match: A0A2K3LT48 (Transposon Tf2-1 polyprotein OS=Trifolium pratense OX=57577 GN=L195_g037736 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.0e-22
Identity = 51/76 (67.11%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1   MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVV 60
           MDFI +LPKSNGY +ILVVVD LSKY+HF+ LK+P+TA  +A++ +KEIVRLHGVP S++
Sbjct: 175 MDFITNLPKSNGYEAILVVVDRLSKYSHFVPLKHPFTARSIASIFVKEIVRLHGVPESIL 234

Query: 61  SDRDNIFTSLFWEELF 77
           SDRD +F S+FW+ELF
Sbjct: 235 SDRDPLFVSIFWKELF 250

[Close]

BLAST of ClCG03G010906 vs. ExPASy TrEMBL
Match: A0A6D2K9A3 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS40736 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21
Identity = 50/76 (65.79%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1   MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVV 60
           MDF+  LP+S+G+N+ILVVVD LSKYAHFL LK+P+TA  VA + ++E+VRLHG PR++V
Sbjct: 44  MDFVKGLPRSDGFNAILVVVDRLSKYAHFLGLKHPFTATDVALMFIREVVRLHGFPRTIV 103

Query: 61  SDRDNIFTSLFWEELF 77
           SDRD +FTS FW+ELF
Sbjct: 104 SDRDKVFTSNFWKELF 119

[Close]

BLAST of ClCG03G010906 vs. ExPASy TrEMBL
Match: A0A5N6P2B1 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_14277 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21
Identity = 52/76 (68.42%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1   MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVV 60
           MDFI  LP S G+N ILVVVD LSKYAHFL LK+PYTA  VA L +KEI+RLHG+P+S+V
Sbjct: 877 MDFIVGLPPSKGFNVILVVVDRLSKYAHFLLLKHPYTAKTVAELFIKEIIRLHGIPKSIV 936

Query: 61  SDRDNIFTSLFWEELF 77
           SDRD +F S FW+E+F
Sbjct: 937 SDRDPVFLSKFWQEIF 952

[Close]

BLAST of ClCG03G010906 vs. ExPASy TrEMBL
Match: A0A2Z7AIK0 (Peroxidase 64 OS=Dorcoceras hygrometricum OX=472368 GN=F511_11077 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21
Identity = 52/76 (68.42%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 1   MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVV 60
           MDFI  LPKS G++ ILVVVD LSKY HF+ LK+PYTA +VA   +KE+VRLHGVPRS+V
Sbjct: 775 MDFITGLPKSRGFDVILVVVDRLSKYGHFIMLKHPYTAHMVADKFVKEVVRLHGVPRSIV 834

Query: 61  SDRDNIFTSLFWEELF 77
           SDRD+IF S+FW+E+F
Sbjct: 835 SDRDSIFMSIFWQEIF 850

The following BLAST results are available for this feature:

BLAST of ClCG03G010906 vs. NCBI nr


Match Name	E-value	Identity	Description
PNY03372.1	9.7e-22	67.11	hypothetical protein L195_g026699 [Trifolium pratense]	[more]
PNX81711.1	1.6e-21	67.11	transposon Tf2-1 polyprotein [Trifolium pratense]	[more]
CAA7053500.1	2.8e-21	65.79	unnamed protein product [Microthlaspi erraticum]	[more]
KZV21584.1	2.8e-21	68.42	peroxidase 64 [Dorcoceras hygrometricum]	[more]
KAD5802917.1	2.8e-21	68.42	hypothetical protein E3N88_14277 [Mikania micrantha]	[more]

BLAST of ClCG03G010906 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	9.8e-09	39.19	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	9.8e-09	39.19	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	9.8e-09	39.19	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	9.8e-09	39.19	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	9.8e-09	39.19	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of ClCG03G010906 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2K3NJZ4	4.7e-22	67.11	Integrase catalytic domain-containing protein OS=Trifolium pratense OX=57577 GN=...	[more]
A0A2K3LT48	8.0e-22	67.11	Transposon Tf2-1 polyprotein OS=Trifolium pratense OX=57577 GN=L195_g037736 PE=4...	[more]
A0A6D2K9A3	1.4e-21	65.79	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS40736 ...	[more]
A0A5N6P2B1	1.4e-21	68.42	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_14277 PE=4 SV=1	[more]
A0A2Z7AIK0	1.4e-21	68.42	Peroxidase 64 OS=Dorcoceras hygrometricum OX=472368 GN=F511_11077 PE=4 SV=1	[more]

BLAST of ClCG03G010906 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..76 e-value: 2.6E-17 score: 64.7
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 1..76
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..76 score: 11.264658
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G010906.1	ClCG03G010906.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity