ClCG03G010810 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G010810
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	CCHC-type domain-containing protein
Location	CG_Chr03: 19796856 .. 19798524 (-)
RNA-Seq Expression	ClCG03G010810
Synteny	ClCG03G010810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAATGCTTTGAGAATGGAAGTTAGCTTAGTTTTGCAAATGGAAACTATGAGGTGAACTCTAACTTGGTACTATGAGTTAAACTTGGAGCCTAGTATGTTAGACTCCTAGGTTAAGGGTTGTTAATTTGACTAAGTGTTAGAAGAGAAGGTTAGAAGCATGAGGCAAAATATGAAAAGTTCAACTCATCATCCTTAAAACTAAGGCTGGAAGCATGGCCTAGGGAGGAGGACTTGGTATGGGGAAGTTGGACGCATGGTTTAGAGGGCTTAGAGACCAAGTCCTTACCTGTAACTATGAGTATTTTTCTTTTTAGAGTTAATGTTATTTTCATACATAATAGCGATGTTTATATGGTGAGAAAAGGGAACGCCTCACAACATGGTTAGAGGATCTTTGGATCTAGTTTCTGAACCTGTGACGAAGCTACGCATAGGATGGTCGGAGGATCTATAGATCTAGAATCCGAGTTTGTGGCGAAAATCTCATATGATGGTCAGAGAGTCACAGGGATCTAGATTTTAAGCCTGTAAGAAGAACCTCACGTGGGATGGTTAGAGGATCGACAAATCTAGCTTTTGAGCCCATAAGAGGTAGGTTTATATGCACATAGAGAAAATGACGGCTTTCTATGCAAGGTAAAGCCAATAGGAAGTGGATGCGGTGAGGTTTGAGTAGATAACCTCATTATGATGTTTTAATGTTTGAGTTATTTTATTAGGAAGGGTCGAGAGAAACCTATGTTTTTATTTCTTCACCACTACTGGGCTTCTAGATCATTATTTTCTTTTATGTTTTTCTTTCTCGGATAGTAGAGAAGTCCTGGTTGCCGCGTGAAATCGAGGTCTACCACAGGATACCTGTACTTTCCAATAGATAGAGTTGGTTTTCGAAAAAAGTTGTAATCTTGTTAAAGGATTGTATAAACATTAAGTGAATTGTTTGTTTTTCCATACTTGCTTCTTAAGCCTTGGAATGGGTGGTTATATGAGAATAGTATGAGATGGATAGTACGCATCACAAAAGGGTGATGTTTGTTGTCTTCACGCCTCCTCTCAAGTTAAAAGTGGTTAATTTGGGAGGGGTGTGACAAGTTGGTATTAGAGCAAAGGTTTGCGGAAAACTTGGAAAAGTTGGAAATTTAGGAATCCTTAAGAATGCATTAGGGAAAGATAGTCAAGGTTGAGGGAATCTAGAAATGGATTAAAACTAGGACTTTAGAAACAGGAAATAAAATCTGGATAGAATAACATTGTTATTTGCTAATGTGTTTCATATGGTATAAGAAGATGTTTAGAAAAAGCAGACTTTGCAGTTAACCTGAGGTTAGGACTCATGATGCTACCATGAGGTTGGTTGAAGAAAGTGAGGGTGAGTCAAGTCATCCGCAGGTAAGAGTCGGAGCGGAGGAGGAAATTTTAGAAAGGTTCACTCAACATTTAGCTGATGGATTAGGTGCAGCTTGAGCAGATCCGAAAAAGAGATACGAAATTGAAAGGCTAAAAAGGCCTTGAGAGCAACAGTGTTTGCGGGGATTGCAGATCCAACCCTGGCTGAGGCTTGGATGAATTTACTTAAAGAATGTTTCAGGGTCATGAGGTGTCTAAAGAATAGGAAGGTGACATTAGTCACCTTTTTGCTCCAAAAGGGGGCAGAGGATTGGTGA

mRNA sequence

ATGGACAATGCTTTGAGAATGGAAGTTAGCTTAGTTTTGCAAATGGAAACTATGAGGGAGGAGGACTTGGTATGGGGAAGTTGGACGCATGGTTTAGAGGGCTTAGAGACCAAGTCCTTACCTGGAACGCCTCACAACATGGTTAGAGGATCTTTGGATCTAGTTTCTGAACCTGTGACGAAGCTACGCATAGGATGGGATCTAGATTTTAAGCCTGTAAGAAGAACCTCACGTGGGATGGTTAGAGGATCGACAAATCTAGCTTTTGAGCCCATAAGAGTTGGTATTAGAGCAAAGGTTTGCGGAAAACTTGGAAAAGTTGGAAATTTAGGAATCCTTAAGAATGCATTAGGGAAAGATAGTCAAGAAAGTGAGGGTGAGTCAAGTCATCCGCAGGTAAGAGTCGGAGCGGAGGAGGAAATTTTAGAAAGAGCAACAGTGTTTGCGGGGATTGCAGATCCAACCCTGGCTGAGGCTTGGATGAATTTACTTAAAGAATGTTTCAGGGTCATGAGGTGTCTAAAGAATAGGAAGGTGACATTAGTCACCTTTTTGCTCCAAAAGGGGGCAGAGGATTGGTGA

Coding sequence (CDS)

ATGGACAATGCTTTGAGAATGGAAGTTAGCTTAGTTTTGCAAATGGAAACTATGAGGGAGGAGGACTTGGTATGGGGAAGTTGGACGCATGGTTTAGAGGGCTTAGAGACCAAGTCCTTACCTGGAACGCCTCACAACATGGTTAGAGGATCTTTGGATCTAGTTTCTGAACCTGTGACGAAGCTACGCATAGGATGGGATCTAGATTTTAAGCCTGTAAGAAGAACCTCACGTGGGATGGTTAGAGGATCGACAAATCTAGCTTTTGAGCCCATAAGAGTTGGTATTAGAGCAAAGGTTTGCGGAAAACTTGGAAAAGTTGGAAATTTAGGAATCCTTAAGAATGCATTAGGGAAAGATAGTCAAGAAAGTGAGGGTGAGTCAAGTCATCCGCAGGTAAGAGTCGGAGCGGAGGAGGAAATTTTAGAAAGAGCAACAGTGTTTGCGGGGATTGCAGATCCAACCCTGGCTGAGGCTTGGATGAATTTACTTAAAGAATGTTTCAGGGTCATGAGGTGTCTAAAGAATAGGAAGGTGACATTAGTCACCTTTTTGCTCCAAAAGGGGGCAGAGGATTGGTGA

Protein sequence

MDNALRMEVSLVLQMETMREEDLVWGSWTHGLEGLETKSLPGTPHNMVRGSLDLVSEPVTKLRIGWDLDFKPVRRTSRGMVRGSTNLAFEPIRVGIRAKVCGKLGKVGNLGILKNALGKDSQESEGESSHPQVRVGAEEEILERATVFAGIADPTLAEAWMNLLKECFRVMRCLKNRKVTLVTFLLQKGAEDW

Homology

[Close]

BLAST of ClCG03G010810 vs. NCBI nr
Match: TYK02787.1 (RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 9.7e-10
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 118 GKDSQESEGESSHPQVRVGAEEEILERATVFAGIADPTLAEAWMNLLKECFRVMRCLKNR 177
           G    +S GESS P+V++   +++   ATVF G  DP  AE W+N+L++CF VM C K R
Sbjct: 22  GPTQGQSVGESSTPRVQIERSKKL--GATVFEGSTDPADAEDWLNMLEKCFDVMYCPKER 81

Query: 178 KVTLVTFLLQKGAEDW 194
           KV L TFLLQK AE W
Sbjct: 82  KVRLATFLLQKKAEGW 95

[Close]

BLAST of ClCG03G010810 vs. NCBI nr
Match: KAA0047616.1 (uncharacterized protein E6C27_scaffold115G00890 [Cucumis melo var. makuwa] >TYK08273.1 uncharacterized protein E5676_scaffold648G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-09
Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 121 SQESEGESSHPQVRVGAEEEILER-----------------------------ATVFAGI 180
           S+ES+ ESS   V V  EE++L+R                             AT FAG 
Sbjct: 25  SEESDAESSRLHVEVNVEEQLLDRLAQGLVSGIRSAQSNLEKNFWIERLKALGATTFAGT 84

Query: 181 ADPTLAEAWMNLLKECFRVMRCLKNRKVTLVTFLLQKGAEDW 194
            +   AEAW+ L+++CF+VMRCL++RKV LV FLL+ G EDW
Sbjct: 85  TNLADAEAWLTLIEKCFKVMRCLEDRKVELVVFLLKNGTEDW 126

[Close]

BLAST of ClCG03G010810 vs. NCBI nr
Match: KAA0056913.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYJ99413.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-09
Identity = 40/103 (38.83%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 120 DSQESEGESSHPQVRVGAEEEILER-----------------------------ATVFAG 179
           +S+E + ESS P V    EE++L+R                             +T FA 
Sbjct: 24  ESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFAR 83

Query: 180 IADPTLAEAWMNLLKECFRVMRCLKNRKVTLVTFLLQKGAEDW 194
             +P  AEAW+ L+++CFRVMRC ++RKV L  FLLQ GAEDW
Sbjct: 84  TTNPANAEAWLTLIEKCFRVMRCSEDRKVELSAFLLQNGAEDW 126

[Close]

BLAST of ClCG03G010810 vs. NCBI nr
Match: TYK15233.1 (uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-09
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 125 EGESSHPQVRVGAEEEILERATVFAGIADPTLAEAWMNLLKECFRVMRCLKNRKVTLVTF 184
           E   S P+ + G E      AT FAG  +PT  EAW+ L+++CFRV RC ++RKV L  F
Sbjct: 176 ESAQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELAAF 235

Query: 185 LLQKGAEDW 194
           LLQ GAEDW
Sbjct: 236 LLQNGAEDW 244

[Close]

BLAST of ClCG03G010810 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-09
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 125 EGESSHPQVRVGAEEEILERATVFAGIADPTLAEAWMNLLKECFRVMRCLKNRKVTLVTF 184
           E   S P+ + G E      AT FAG  +P  AEAW+ L+++CFRV RC ++RKV L  F
Sbjct: 46  ESTQSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELAAF 105

Query: 185 LLQKGAEDW 194
           LLQ GAEDW
Sbjct: 106 LLQNGAEDW 114

[Close]

BLAST of ClCG03G010810 vs. ExPASy TrEMBL
Match: A0A5D3BTJ5 (RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00460 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.7e-10
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 118 GKDSQESEGESSHPQVRVGAEEEILERATVFAGIADPTLAEAWMNLLKECFRVMRCLKNR 177
           G    +S GESS P+V++   +++   ATVF G  DP  AE W+N+L++CF VM C K R
Sbjct: 22  GPTQGQSVGESSTPRVQIERSKKL--GATVFEGSTDPADAEDWLNMLEKCFDVMYCPKER 81

Query: 178 KVTLVTFLLQKGAEDW 194
           KV L TFLLQK AE W
Sbjct: 82  KVRLATFLLQKKAEGW 95

[Close]

BLAST of ClCG03G010810 vs. ExPASy TrEMBL
Match: A0A5A7U067 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00470 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.1e-10
Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 121 SQESEGESSHPQVRVGAEEEILER-----------------------------ATVFAGI 180
           S+ES+ ESS   V V  EE++L+R                             AT FAG 
Sbjct: 25  SEESDAESSRLHVEVNVEEQLLDRLAQGLVSGIRSAQSNLEKNFWIERLKALGATTFAGT 84

Query: 181 ADPTLAEAWMNLLKECFRVMRCLKNRKVTLVTFLLQKGAEDW 194
            +   AEAW+ L+++CF+VMRCL++RKV LV FLL+ G EDW
Sbjct: 85  TNLADAEAWLTLIEKCFKVMRCLEDRKVELVVFLLKNGTEDW 126

[Close]

BLAST of ClCG03G010810 vs. ExPASy TrEMBL
Match: A0A5A7ULX5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G006310 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.0e-10
Identity = 40/103 (38.83%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 120 DSQESEGESSHPQVRVGAEEEILER-----------------------------ATVFAG 179
           +S+E + ESS P V    EE++L+R                             +T FA 
Sbjct: 24  ESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFAR 83

Query: 180 IADPTLAEAWMNLLKECFRVMRCLKNRKVTLVTFLLQKGAEDW 194
             +P  AEAW+ L+++CFRVMRC ++RKV L  FLLQ GAEDW
Sbjct: 84  TTNPANAEAWLTLIEKCFRVMRCSEDRKVELSAFLLQNGAEDW 126

[Close]

BLAST of ClCG03G010810 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 125 EGESSHPQVRVGAEEEILERATVFAGIADPTLAEAWMNLLKECFRVMRCLKNRKVTLVTF 184
           E   S P+ + G E      AT FAG  +P  AEAW+ L+++CFRV RC ++RKV L  F
Sbjct: 46  ESTQSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELAAF 105

Query: 185 LLQKGAEDW 194
           LLQ GAEDW
Sbjct: 106 LLQNGAEDW 114

[Close]

BLAST of ClCG03G010810 vs. ExPASy TrEMBL
Match: A0A5A7TBS0 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G002900 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 125 EGESSHPQVRVGAEEEILERATVFAGIADPTLAEAWMNLLKECFRVMRCLKNRKVTLVTF 184
           E   S P+ + G E      AT FAG  +PT  EAW+ L+++CFRV RC ++RKV L  F
Sbjct: 140 ESAQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELAAF 199

Query: 185 LLQKGAEDW 194
           LLQ GAEDW
Sbjct: 200 LLQNGAEDW 208

The following BLAST results are available for this feature:

BLAST of ClCG03G010810 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02787.1	9.7e-10	51.32	RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-c...	[more]
KAA0047616.1	1.3e-09	40.20	uncharacterized protein E6C27_scaffold115G00890 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0056913.1	1.7e-09	38.83	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYJ99413.1 D...	[more]
TYK15233.1	2.2e-09	50.72	uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa]	[more]
KAA0060484.1	2.2e-09	50.72	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag...	[more]

BLAST of ClCG03G010810 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G010810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTJ5	4.7e-10	51.32	RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-c...	[more]
A0A5A7U067	6.1e-10	40.20	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7ULX5	8.0e-10	38.83	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UZM6	1.0e-09	50.72	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7TBS0	1.0e-09	50.72	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of ClCG03G010810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G010810.1	ClCG03G010810.1	mRNA