ClCG03G010345 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G010345
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Gag/pol protein
Location	CG_Chr03: 18553995 .. 18554387 (-)
RNA-Seq Expression	ClCG03G010345
Synteny	ClCG03G010345

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGCTCCTTCATACAATTACTTGCTTATGAAAAACTAAACGGAGATAACTACACAACATGGAAATCGAATATAAACGTAATACTAGTGATTGATGATTTAAGCTTCGTCTTATCGGAGGTATGTACTTCAAATCCTGACTCGTCAACAAATCGAACTACTCGAGATGCCTATAGCAGATGGACTAGGGCCAATGATAAGACCAAAGTCTATATCTTAGCAAGCATATCTGATGTTCTGACTAAGAAACACAAGGGCATGGTCACCACTAAAGAGATCACAGATTCGTTGCAAACGATGTTTGGACAACTGTCCTCATCGATCAGGCACGATGCTCTCAAATACGTTTACAACTCTCGCATGAAGGAAGGAACCTCTGTTAGAGAATAG

mRNA sequence

ATGTCTAGCTCCTTCATACAATTACTTGCTTATGAAAAACTAAACGGAGATAACTACACAACATGGAAATCGAATATAAACGTAATACTAGTGATTGATGATTTAAGCTTCGTCTTATCGGAGGTATGTACTTCAAATCCTGACTCGTCAACAAATCGAACTACTCGAGATGCCTATAGCAGATGGACTAGGGCCAATGATAAGACCAAAGTCTATATCTTAGCAAGCATATCTGATGTTCTGACTAAGAAACACAAGGGCATGGTCACCACTAAAGAGATCACAGATTCGTTGCAAACGATGTTTGGACAACTGTCCTCATCGATCAGGCACGATGCTCTCAAATACGTTTACAACTCTCGCATGAAGGAAGGAACCTCTGTTAGAGAATAG

Coding sequence (CDS)

ATGTCTAGCTCCTTCATACAATTACTTGCTTATGAAAAACTAAACGGAGATAACTACACAACATGGAAATCGAATATAAACGTAATACTAGTGATTGATGATTTAAGCTTCGTCTTATCGGAGGTATGTACTTCAAATCCTGACTCGTCAACAAATCGAACTACTCGAGATGCCTATAGCAGATGGACTAGGGCCAATGATAAGACCAAAGTCTATATCTTAGCAAGCATATCTGATGTTCTGACTAAGAAACACAAGGGCATGGTCACCACTAAAGAGATCACAGATTCGTTGCAAACGATGTTTGGACAACTGTCCTCATCGATCAGGCACGATGCTCTCAAATACGTTTACAACTCTCGCATGAAGGAAGGAACCTCTGTTAGAGAATAG

Protein sequence

MSSSFIQLLAYEKLNGDNYTTWKSNINVILVIDDLSFVLSEVCTSNPDSSTNRTTRDAYSRWTRANDKTKVYILASISDVLTKKHKGMVTTKEITDSLQTMFGQLSSSIRHDALKYVYNSRMKEGTSVRE

Homology

[Close]

BLAST of ClCG03G010345 vs. NCBI nr
Match: XP_038891685.1 (uncharacterized protein LOC120081079 [Benincasa hispida])

HSP 1 Score: 177.2 bits (448), Expect = 9.3e-41
Identity = 86/130 (66.15%), Postives = 104/130 (80.00%), Query Frame = 0


Query: 1   MSSSFIQLLAYEKLNGDNYTTWKSNINVILVIDDLSFVLSEVCTSNPDSSTNRTTRDAYS 60
           M+S  IQLLA EKLNGDNY+ WKSN+N IL++DDL FVLSE C   P S+ NRT R+AY 
Sbjct: 1   MNSLIIQLLASEKLNGDNYSAWKSNLNTILIVDDLRFVLSEECPQAPASNANRTVREAYD 60

Query: 61  RWTRANDKTKVYILASISDVLTKKHKGMVTTKEITDSLQTMFGQLSSSIRHDALKYVYNS 120
           RW +AN+K  VYILAS+SDVL KKH+ + T KEI DSL+ MFGQLS S+RH+A+K++Y  
Sbjct: 61  RWVKANEKACVYILASMSDVLAKKHESLATAKEIIDSLREMFGQLSWSLRHEAIKHIYTK 120

Query: 121 RMKEGTSVRE 131
           RMKEGTSVRE
Sbjct: 121 RMKEGTSVRE 130

[Close]

BLAST of ClCG03G010345 vs. NCBI nr
Match: XP_022157095.1 (uncharacterized protein LOC111023904 [Momordica charantia])

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-40
Identity = 84/130 (64.62%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 1   MSSSFIQLLAYEKLNGDNYTTWKSNINVILVIDDLSFVLSEVCTSNPDSSTNRTTRDAYS 60
           M+SS +QLLA EKLNG NY+TWK+N+N ILV+DDL FVL+E C   P  + NR  R+A+ 
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFD 60

Query: 61  RWTRANDKTKVYILASISDVLTKKHKGMVTTKEITDSLQTMFGQLSSSIRHDALKYVYNS 120
           RW +ANDK +VYILAS++DVL KKH+ ++T KEI DSL+ MFG+LSS++RH+ALKYVYN 
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKAMFGELSSTLRHEALKYVYNE 120

Query: 121 RMKEGTSVRE 131
            MKEGTSVRE
Sbjct: 121 HMKEGTSVRE 130

[Close]

BLAST of ClCG03G010345 vs. NCBI nr
Match: XP_022158568.1 (uncharacterized protein LOC111025021 [Momordica charantia])

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-40
Identity = 87/130 (66.92%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 1   MSSSFIQLLAYEKLNGDNYTTWKSNINVILVIDDLSFVLSEVCTSNPDSSTNRTTRDAYS 60
           MS+S IQLLA +KLNGDNY  WKSN+N ILVIDDL FVL+E C   P  + NRT RDAY 
Sbjct: 7   MSTSTIQLLASDKLNGDNYGIWKSNLNTILVIDDLRFVLTEECPPAPAPNANRTVRDAYD 66

Query: 61  RWTRANDKTKVYILASISDVLTKKHKGMVTTKEITDSLQTMFGQLSSSIRHDALKYVYNS 120
           RW +AN+K +VYILASIS+VL+KKH+ + TT+EI DSLQ +FGQ S+++ HDA+KYVYN 
Sbjct: 67  RWVKANEKARVYILASISEVLSKKHERLATTREIMDSLQALFGQPSTTLMHDAVKYVYNC 126

Query: 121 RMKEGTSVRE 131
           RMKEG+SVRE
Sbjct: 127 RMKEGSSVRE 136

[Close]

BLAST of ClCG03G010345 vs. NCBI nr
Match: KAA0035676.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK30868.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 2.1e-40
Identity = 83/130 (63.85%), Postives = 105/130 (80.77%), Query Frame = 0


Query: 1   MSSSFIQLLAYEKLNGDNYTTWKSNINVILVIDDLSFVLSEVCTSNPDSSTNRTTRDAYS 60
           M+SS +QLLA +KLNGDNY TWKSN+N ILV+DDL F+L+E C   P S+ NR +R+AY 
Sbjct: 1   MNSSIVQLLASKKLNGDNYATWKSNLNTILVVDDLRFILTEECPQTPTSNANRASREAYD 60

Query: 61  RWTRANDKTKVYILASISDVLTKKHKGMVTTKEITDSLQTMFGQLSSSIRHDALKYVYNS 120
           RW +AN+K +VYILAS+SDVL KKH+ + TTKEI DSL+ MFGQ   S+RH+A+KY+Y  
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHECLATTKEIVDSLKGMFGQPEWSLRHEAIKYIYTK 120

Query: 121 RMKEGTSVRE 131
           RMK+GTSVRE
Sbjct: 121 RMKKGTSVRE 130

[Close]

BLAST of ClCG03G010345 vs. NCBI nr
Match: KAA0064149.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 2.7e-40
Identity = 85/130 (65.38%), Postives = 103/130 (79.23%), Query Frame = 0


Query: 1   MSSSFIQLLAYEKLNGDNYTTWKSNINVILVIDDLSFVLSEVCTSNPDSSTNRTTRDAYS 60
           M+SS +QLLA EKLNGDNY TWKSN+N ILV+D+L FVL+E C   P S+ NRT+R AY 
Sbjct: 1   MNSSIVQLLASEKLNGDNYVTWKSNLNTILVVDNLRFVLTEECPQTPASNVNRTSRKAYD 60

Query: 61  RWTRANDKTKVYILASISDVLTKKHKGMVTTKEITDSLQTMFGQLSSSIRHDALKYVYNS 120
           RW +AN+K +VYILAS+SDVL KKH+ + TTKE  DSL+ MFGQ   S+RH+A KY+Y  
Sbjct: 61  RWIKANEKVRVYILASMSDVLAKKHESLATTKERMDSLKGMFGQQEWSLRHEAFKYIYTK 120

Query: 121 RMKEGTSVRE 131
           RMKEGTSVRE
Sbjct: 121 RMKEGTSVRE 130

[Close]

BLAST of ClCG03G010345 vs. ExPASy TrEMBL
Match: A0A6J1DWG6 (uncharacterized protein LOC111025021 OS=Momordica charantia OX=3673 GN=LOC111025021 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.9e-41
Identity = 87/130 (66.92%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 1   MSSSFIQLLAYEKLNGDNYTTWKSNINVILVIDDLSFVLSEVCTSNPDSSTNRTTRDAYS 60
           MS+S IQLLA +KLNGDNY  WKSN+N ILVIDDL FVL+E C   P  + NRT RDAY 
Sbjct: 7   MSTSTIQLLASDKLNGDNYGIWKSNLNTILVIDDLRFVLTEECPPAPAPNANRTVRDAYD 66

Query: 61  RWTRANDKTKVYILASISDVLTKKHKGMVTTKEITDSLQTMFGQLSSSIRHDALKYVYNS 120
           RW +AN+K +VYILASIS+VL+KKH+ + TT+EI DSLQ +FGQ S+++ HDA+KYVYN 
Sbjct: 67  RWVKANEKARVYILASISEVLSKKHERLATTREIMDSLQALFGQPSTTLMHDAVKYVYNC 126

Query: 121 RMKEGTSVRE 131
           RMKEG+SVRE
Sbjct: 127 RMKEGSSVRE 136

[Close]

BLAST of ClCG03G010345 vs. ExPASy TrEMBL
Match: A0A6J1DS54 (uncharacterized protein LOC111023904 OS=Momordica charantia OX=3673 GN=LOC111023904 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.9e-41
Identity = 84/130 (64.62%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 1   MSSSFIQLLAYEKLNGDNYTTWKSNINVILVIDDLSFVLSEVCTSNPDSSTNRTTRDAYS 60
           M+SS +QLLA EKLNG NY+TWK+N+N ILV+DDL FVL+E C   P  + NR  R+A+ 
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFD 60

Query: 61  RWTRANDKTKVYILASISDVLTKKHKGMVTTKEITDSLQTMFGQLSSSIRHDALKYVYNS 120
           RW +ANDK +VYILAS++DVL KKH+ ++T KEI DSL+ MFG+LSS++RH+ALKYVYN 
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKAMFGELSSTLRHEALKYVYNE 120

Query: 121 RMKEGTSVRE 131
            MKEGTSVRE
Sbjct: 121 HMKEGTSVRE 130

[Close]

BLAST of ClCG03G010345 vs. ExPASy TrEMBL
Match: A0A5A7T0E9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00680 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.0e-40
Identity = 83/130 (63.85%), Postives = 105/130 (80.77%), Query Frame = 0


Query: 1   MSSSFIQLLAYEKLNGDNYTTWKSNINVILVIDDLSFVLSEVCTSNPDSSTNRTTRDAYS 60
           M+SS +QLLA +KLNGDNY TWKSN+N ILV+DDL F+L+E C   P S+ NR +R+AY 
Sbjct: 1   MNSSIVQLLASKKLNGDNYATWKSNLNTILVVDDLRFILTEECPQTPTSNANRASREAYD 60

Query: 61  RWTRANDKTKVYILASISDVLTKKHKGMVTTKEITDSLQTMFGQLSSSIRHDALKYVYNS 120
           RW +AN+K +VYILAS+SDVL KKH+ + TTKEI DSL+ MFGQ   S+RH+A+KY+Y  
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHECLATTKEIVDSLKGMFGQPEWSLRHEAIKYIYTK 120

Query: 121 RMKEGTSVRE 131
           RMK+GTSVRE
Sbjct: 121 RMKKGTSVRE 130

[Close]

BLAST of ClCG03G010345 vs. ExPASy TrEMBL
Match: A0A5D3CWV9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3068G00080 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.3e-40
Identity = 85/130 (65.38%), Postives = 103/130 (79.23%), Query Frame = 0


Query: 1   MSSSFIQLLAYEKLNGDNYTTWKSNINVILVIDDLSFVLSEVCTSNPDSSTNRTTRDAYS 60
           M+SS +QLLA EKLNGDNY TWKSN+N ILV+D+L FVL+E C   P S+ NRT+R AY 
Sbjct: 1   MNSSIVQLLASEKLNGDNYVTWKSNLNTILVVDNLRFVLTEECPQTPASNVNRTSRKAYD 60

Query: 61  RWTRANDKTKVYILASISDVLTKKHKGMVTTKEITDSLQTMFGQLSSSIRHDALKYVYNS 120
           RW +AN+K +VYILAS+SDVL KKH+ + TTKE  DSL+ MFGQ   S+RH+A KY+Y  
Sbjct: 61  RWIKANEKVRVYILASMSDVLAKKHESLATTKERMDSLKGMFGQQEWSLRHEAFKYIYTK 120

Query: 121 RMKEGTSVRE 131
           RMKEGTSVRE
Sbjct: 121 RMKEGTSVRE 130

[Close]

BLAST of ClCG03G010345 vs. ExPASy TrEMBL
Match: A0A5A7VF40 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00720 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.3e-40
Identity = 85/130 (65.38%), Postives = 103/130 (79.23%), Query Frame = 0


Query: 1   MSSSFIQLLAYEKLNGDNYTTWKSNINVILVIDDLSFVLSEVCTSNPDSSTNRTTRDAYS 60
           M+SS +QLLA EKLNGDNY TWKSN+N ILV+D+L FVL+E C   P S+ NRT+R AY 
Sbjct: 1   MNSSIVQLLASEKLNGDNYVTWKSNLNTILVVDNLRFVLTEECPQTPASNVNRTSRKAYD 60

Query: 61  RWTRANDKTKVYILASISDVLTKKHKGMVTTKEITDSLQTMFGQLSSSIRHDALKYVYNS 120
           RW +AN+K +VYILAS+SDVL KKH+ + TTKE  DSL+ MFGQ   S+RH+A KY+Y  
Sbjct: 61  RWIKANEKVRVYILASMSDVLAKKHESLATTKERMDSLKGMFGQQEWSLRHEAFKYIYTK 120

Query: 121 RMKEGTSVRE 131
           RMKEGTSVRE
Sbjct: 121 RMKEGTSVRE 130

The following BLAST results are available for this feature:

BLAST of ClCG03G010345 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891685.1	9.3e-41	66.15	uncharacterized protein LOC120081079 [Benincasa hispida]	[more]
XP_022157095.1	1.2e-40	64.62	uncharacterized protein LOC111023904 [Momordica charantia]	[more]
XP_022158568.1	1.2e-40	66.92	uncharacterized protein LOC111025021 [Momordica charantia]	[more]
KAA0035676.1	2.1e-40	63.85	gag/pol protein [Cucumis melo var. makuwa] >TYK30868.1 gag/pol protein [Cucumis ...	[more]
KAA0064149.1	2.7e-40	65.38	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of ClCG03G010345 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G010345 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWG6	5.9e-41	66.92	uncharacterized protein LOC111025021 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DS54	5.9e-41	64.62	uncharacterized protein LOC111023904 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A5A7T0E9	1.0e-40	63.85	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0068...	[more]
A0A5D3CWV9	1.3e-40	65.38	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3068G000...	[more]
A0A5A7VF40	1.3e-40	65.38	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G0072...	[more]

BLAST of ClCG03G010345 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 18..130
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 18..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G010345.1	ClCG03G010345.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding