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ClCG03G009950 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACAACCCCATTTACCTCTACTATGTTGAAGTGGACCATCATGTCCAGAACATGTTCGTTAACAAAGGTTCCTTCTTTCCTACGGGAGTTGTAACTGTATTCGATAGCATCATGCCAAGCTGATGAGGACGGTTGTCCAAACACCGCCTATAGTGAGTCATGATTTCCTTGGCGGTCAGCATGTTCTCATGCTTCTTGGACAACTATGCTTGCCAAGATGGTATGAATGGAGGAATCTCAATCATGTAATATGAACATCAGAAAGCCCAAGTTTAAACTAACCAAAGAAGAAGAATTATGCAGTCAAGTGAAATTTATGAAGAATCAAGCTTCATTTAATAGCAAAGACTTCAAAATACTTGAAATGAGATGTCATTTACTCTTGGATGGTTACAATTCGAGGGAATATGGATGAAGAAAAGTTAATTTCGGATTTATTGTATTTACTATGTAATTTTCAGTTTTAAGTCATTTTCTGTATTTTATGTTACAATTAGATGATGGCTGATAATGGTAATTAATAATGAGAGTTACAACTCTTTGAATGCTTCAAAGAATGTCTAGGGTTAGATTTTGAGGCCTATATAATGTCATGTTTGTTAAAAAAACTGGAGACTTGGAAGAGATTTGGAAAATGTAGTAAAAAAGAGCCTTTGAGCTTTCCTTTAGCCTTGTACTATGTTTCTTTTGCAATTCTATGACGTTTAGATTGCAGGTCCAAAATCATTCAAGCTTGACTTGATCGATCTTGCTTGTGGAGTGGTTCGAAGATCAAGGATCAATGGGAGCATCAATATTTATCCGATCCGTGGTCTTGTCGATCGTCTATGATAAGTAACCCTAGAGGATTTTGATCTAACAACCTTGTTGATGAATAAGACCTTTAGATCACAAACTTAAACACCTGAAACCAAGATGATCTCAACCCCTAGGAATGGCTAGACGACGGATTACTTAGACAATCGACAAAAGCATGGTTTAAACAAACTTTACGTTCCCATCGAATCCCGATCTTCGAATCACTTCGATCTCACGGCTTGGATTACTTAGATGATCGACAAAAAAATCTAGAGTTTGTTGGTTGGAGTTGGGTGACCAGAATTCTGCTTTCTTTCACCATAGTGTGTGATCTAGCCAGGGAAGGAATGAGTTGTTGCTTTCTTTCACCATTGTGTGTGATCTAGAGAGGGAAGGAATGAGTTGTTCTCTATGATTGACAGTATGGGTGTCAGACACTCCTCTCCTAAGAGTGTTGCACAGGCTACTATTGATTTTCTTTTTTGGGGGAGATTGGGGTAATAGCCTATTGGTTATAGGGACCTGCTTGCTGAAATCTTAAAGATAAAGTTTCATTTGCCTGAGGAATGTTGTCATGATATATGTCGTCCTATCACTAGGGATGAGGTCCGGCAAGCTCTTTTCTCTATAAAAAATGGTAATGTTCCAGGTCCTAATGGATGCTCAGTGGGTTTCTTTAAGGCTGCTTGGTCTGTGGTAGGTGATGGCTTTTGCTTTGCGGTGTGGCACTTTTTTGATTCGTGCTATCTTCCTACTGGTGTTAATGCTACAACTATTACGTTGGTGCCTAAACGGGCTGGGGTGGAGAGGTTATTGGATTTCAGGCCTATTTCTTGCTGTAATGTGGTTTATAAATGTATCACTAAATTGTTAGCTTACCGGTTGCAAGGGTGGTTGGCTAAGTTTGTGAGCGATAATAAGTCTACTTTCGTCCTTGGGCAGTCCATCTCTGGTAACATCCTCTTGTGTGAAGAGCTTGTGGGGGGGGGGGGGGGTATCATCGGAATAAAGGTCCCTCGTGGTGTGTTGTCAAGGTAGACTTACAGAAAGCTTGTGATTCTGATCATTGAGACTTTCTGTTTGGTGCCTTATTGGCCACTGGTACTCGGTTCAGTTTGTGAGTTGGGTGGGGCTTGCAGTACATCCCCTAAGTTCTCTATTTTGGTGAATGGCTCTATGGAGGGGCATTTTCCTGGTAGGAAAGGGGTCTATGTCAAGGTGATCCTTTATCTCCGTTTTGTTCGTGATTGTCATGAAGGACTTGTTGAGATTGCTTAATCGGCCGTTTGGGGGGTTTTGGTTTCACCACAGGTGTGAGATGGTTAGTCTTACCCATCTTTCATTTCCGGATGATTTGATGATTTTCTATGCGGTTGAGTGGGGTTCTCTTCAGTTTGTCAGGGATACATTATGTTATTTTGAGAGGTTGGCTAAACTTAAGGCTAATGTTGGGAAGAGTTCTATTTTTTTGGCTAGTGTGGATCGGGGTTGTGATATGAACGGAGAAAAGTCAATCATGCAATATGAACATCAAGAATGA ATGACAACCCCATTTACCTCTACTATGTTGAAGTGGACCATCATGTCCAGAACATGTTCGTTAACAAAGCATCATGCCAAGCTGATGAGGACGGTTGTCCAAACACCGCCTATAGTGAGTCATGATTTCCTTGGCGGTCAGCATGTTCTCATGCTTCTTGGACAACTATGCTTGCCAAGATGGTATGAATGGAGGAATCTCAATCATATTGCAGGTCCAAAATCATTCAAGCTTGACTTGATCGATCTTGCTTGTGGAGTGGTTCGAAGATCAAGGATCAATGGGAGCATCAATATTTATCCGATCCGTGGTCTTGAATGGCTAGACGACGGATTACTTAGACAATCGACAAAAGCATGGTTTAAACAAACTTTACGTTCCCATCGAATCCCGATCTTCGAATCACTTCGATCTCACGGCTTGGATTACTTAGATGATCGACAAAAAAATCTAGAGTTTGTTGGTTGGAGTTGGCCTATTGGTTATAGGGACCTGCTTGCTGAAATCTTAAAGATAAAGTTTCATTTGCCTGAGGAATGTTGTCATGATATATGTCGTCCTATCACTAGGGATGAGGTCCGGCAAGCTCTTTTCTCTATAAAAAATGGTAATGTTCCAGGTCCTAATGGATGCTCAGTGGGTTTCTTTAAGGCTGCTTGGTCTGTGGTAGGTGATGGCTTTTGCTTTGCGGTGTGGCACTTTTTTGATTCGTGCTATCTTCCTACTGGTGTTAATGCTACAACTATTACGTTGGTGCCTAAACGGGCTGGGGTGGAGAGGTTATTGGATTTCAGGCCTATTTCTTGCTGTAATGTGGTTTATAAATGTATCACTAAATTGTTAGCTTACCGGTTGCAAGGGTGGTTGGCTAAGTTTGTGAGCGATAATAAGTCTACTTTCGTCCTTGGGCAGTCCATCTCTGGTAACATCCTCTTGTGTGAAGAGCTTACTTACAGAAAGCTTGTGATTCTGATCATTGAGACTTTCTGTTTGGTGCCTTATTGGCCACTGGTACTCGGTTCAGTTTGTGAGTTGGGTGGGGCTTGCAGTACATCCCCTAAGTTCTCTATTTTGGTGAATGGCTCTATGGAGGGGCATTTTCCTGGTAGGAAAGGGGTCTATGTCAAGGACTTGTTGAGATTGCTTAATCGGCCGTTTGGGGGGTTTTGGTTTCACCACAGGTGTGAGATGGTTAGTCTTACCCATCTTTCATTTCCGGATGATTTGATGATTTTCTATGCGGTTGAGTGGGGTTCTCTTCAGTTTGTCAGGGATACATTATGTTATTTTGAGAGGTTGGCTAAACTTAAGGCTAATGTTGGGAAGAGTTCTATTTTTTTGGCTAGTGTGGATCGGGGTTGTGATATGAACGGAGAAAAGTCAATCATGCAATATGAACATCAAGAATGA ATGACAACCCCATTTACCTCTACTATGTTGAAGTGGACCATCATGTCCAGAACATGTTCGTTAACAAAGCATCATGCCAAGCTGATGAGGACGGTTGTCCAAACACCGCCTATAGTGAGTCATGATTTCCTTGGCGGTCAGCATGTTCTCATGCTTCTTGGACAACTATGCTTGCCAAGATGGTATGAATGGAGGAATCTCAATCATATTGCAGGTCCAAAATCATTCAAGCTTGACTTGATCGATCTTGCTTGTGGAGTGGTTCGAAGATCAAGGATCAATGGGAGCATCAATATTTATCCGATCCGTGGTCTTGAATGGCTAGACGACGGATTACTTAGACAATCGACAAAAGCATGGTTTAAACAAACTTTACGTTCCCATCGAATCCCGATCTTCGAATCACTTCGATCTCACGGCTTGGATTACTTAGATGATCGACAAAAAAATCTAGAGTTTGTTGGTTGGAGTTGGCCTATTGGTTATAGGGACCTGCTTGCTGAAATCTTAAAGATAAAGTTTCATTTGCCTGAGGAATGTTGTCATGATATATGTCGTCCTATCACTAGGGATGAGGTCCGGCAAGCTCTTTTCTCTATAAAAAATGGTAATGTTCCAGGTCCTAATGGATGCTCAGTGGGTTTCTTTAAGGCTGCTTGGTCTGTGGTAGGTGATGGCTTTTGCTTTGCGGTGTGGCACTTTTTTGATTCGTGCTATCTTCCTACTGGTGTTAATGCTACAACTATTACGTTGGTGCCTAAACGGGCTGGGGTGGAGAGGTTATTGGATTTCAGGCCTATTTCTTGCTGTAATGTGGTTTATAAATGTATCACTAAATTGTTAGCTTACCGGTTGCAAGGGTGGTTGGCTAAGTTTGTGAGCGATAATAAGTCTACTTTCGTCCTTGGGCAGTCCATCTCTGGTAACATCCTCTTGTGTGAAGAGCTTACTTACAGAAAGCTTGTGATTCTGATCATTGAGACTTTCTGTTTGGTGCCTTATTGGCCACTGGTACTCGGTTCAGTTTGTGAGTTGGGTGGGGCTTGCAGTACATCCCCTAAGTTCTCTATTTTGGTGAATGGCTCTATGGAGGGGCATTTTCCTGGTAGGAAAGGGGTCTATGTCAAGGACTTGTTGAGATTGCTTAATCGGCCGTTTGGGGGGTTTTGGTTTCACCACAGGTGTGAGATGGTTAGTCTTACCCATCTTTCATTTCCGGATGATTTGATGATTTTCTATGCGGTTGAGTGGGGTTCTCTTCAGTTTGTCAGGGATACATTATGTTATTTTGAGAGGTTGGCTAAACTTAAGGCTAATGTTGGGAAGAGTTCTATTTTTTTGGCTAGTGTGGATCGGGGTTGTGATATGAACGGAGAAAAGTCAATCATGCAATATGAACATCAAGAATGA MTTPFTSTMLKWTIMSRTCSLTKHHAKLMRTVVQTPPIVSHDFLGGQHVLMLLGQLCLPRWYEWRNLNHIAGPKSFKLDLIDLACGVVRRSRINGSINIYPIRGLEWLDDGLLRQSTKAWFKQTLRSHRIPIFESLRSHGLDYLDDRQKNLEFVGWSWPIGYRDLLAEILKIKFHLPEECCHDICRPITRDEVRQALFSIKNGNVPGPNGCSVGFFKAAWSVVGDGFCFAVWHFFDSCYLPTGVNATTITLVPKRAGVERLLDFRPISCCNVVYKCITKLLAYRLQGWLAKFVSDNKSTFVLGQSISGNILLCEELTYRKLVILIIETFCLVPYWPLVLGSVCELGGACSTSPKFSILVNGSMEGHFPGRKGVYVKDLLRLLNRPFGGFWFHHRCEMVSLTHLSFPDDLMIFYAVEWGSLQFVRDTLCYFERLAKLKANVGKSSIFLASVDRGCDMNGEKSIMQYEHQE Homology
BLAST of ClCG03G009950 vs. NCBI nr
Match: KAA0046851.1 (uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]) HSP 1 Score: 288.5 bits (737), Expect = 1.0e-73 Identity = 159/327 (48.62%), Postives = 203/327 (62.08%), Query Frame = 0
BLAST of ClCG03G009950 vs. NCBI nr
Match: KAA0065355.1 (F17F8.5 [Cucumis melo var. makuwa] >TYK20852.1 F17F8.5 [Cucumis melo var. makuwa]) HSP 1 Score: 280.8 bits (717), Expect = 2.2e-71 Identity = 156/326 (47.85%), Postives = 196/326 (60.12%), Query Frame = 0
BLAST of ClCG03G009950 vs. NCBI nr
Match: XP_031745730.1 (uncharacterized protein LOC116406187 [Cucumis sativus]) HSP 1 Score: 271.9 bits (694), Expect = 1.0e-68 Identity = 151/324 (46.60%), Postives = 194/324 (59.88%), Query Frame = 0
BLAST of ClCG03G009950 vs. NCBI nr
Match: TYK12108.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 263.8 bits (673), Expect = 2.7e-66 Identity = 143/295 (48.47%), Postives = 185/295 (62.71%), Query Frame = 0
BLAST of ClCG03G009950 vs. NCBI nr
Match: KAA0049769.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 263.8 bits (673), Expect = 2.7e-66 Identity = 143/295 (48.47%), Postives = 185/295 (62.71%), Query Frame = 0
BLAST of ClCG03G009950 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 3.6e-13 Identity = 39/132 (29.55%), Postives = 71/132 (53.79%), Query Frame = 0
BLAST of ClCG03G009950 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 6.7e-07 Identity = 69/309 (22.33%), Postives = 125/309 (40.45%), Query Frame = 0
BLAST of ClCG03G009950 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2) HSP 1 Score: 49.7 bits (117), Expect = 1.1e-04 Identity = 33/119 (27.73%), Postives = 58/119 (48.74%), Query Frame = 0
BLAST of ClCG03G009950 vs. ExPASy TrEMBL
Match: A0A5A7TZS0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19358G00020 PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 5.0e-74 Identity = 159/327 (48.62%), Postives = 203/327 (62.08%), Query Frame = 0
BLAST of ClCG03G009950 vs. ExPASy TrEMBL
Match: A0A5A7VHU9 (F17F8.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold682G00030 PE=4 SV=1) HSP 1 Score: 280.8 bits (717), Expect = 1.0e-71 Identity = 156/326 (47.85%), Postives = 196/326 (60.12%), Query Frame = 0
BLAST of ClCG03G009950 vs. ExPASy TrEMBL
Match: A0A5D3CLU1 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00420 PE=4 SV=1) HSP 1 Score: 263.8 bits (673), Expect = 1.3e-66 Identity = 143/295 (48.47%), Postives = 185/295 (62.71%), Query Frame = 0
BLAST of ClCG03G009950 vs. ExPASy TrEMBL
Match: A0A5A7U8G1 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G001220 PE=4 SV=1) HSP 1 Score: 263.8 bits (673), Expect = 1.3e-66 Identity = 143/295 (48.47%), Postives = 185/295 (62.71%), Query Frame = 0
BLAST of ClCG03G009950 vs. ExPASy TrEMBL
Match: A0A5A7UV01 (F17F8.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00020 PE=4 SV=1) HSP 1 Score: 256.9 bits (655), Expect = 1.6e-64 Identity = 145/305 (47.54%), Postives = 189/305 (61.97%), Query Frame = 0
BLAST of ClCG03G009950 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein ) HSP 1 Score: 81.6 bits (200), Expect = 1.8e-15 Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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