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ClCG03G009873 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATGACAAAGGGTTGGTTTTCTTTGATGAGGGGAAACCAGAGAAGGATAATAAGGGGTCGGTGAAAGATGTGGCAGAGAAGAAGGTGGAGGAGTTCTTCAAGTGTTTGAAGAAAGTTCCAGCTAAAGATTCTGAAATTGGTCAGATGGATCCATATCTTTTAACGAGGCATACGGAGCTCCCTGCCAAATGGGATAGTCCTTCTGGGACAGTGGTTTTGCTGAACAAACCTAAAGGGTGGACTTCATTTACGGTATGTGGAAAACTTTGGCGCCTAGTCAAAGTGAAAAAGGTAGGTCATGCAGGTACTCTTGATCCTATGGCTACTGGTTTGTTGATAGTGTGTGTTGGTAAAGCGATGAAGTTGGTAGACAGATATCAAGGTATGAGCTACAGTGGAGTTTTCCGTTTAGGAGAGGCTACTTCAACTTGGGATGCTGATTCACCGGTAATTCAGCGAGAGCCTTGGGAGCACATCAAAGATGATGACATCAAAAAAGCTGCTGCCTCTTTTTGTGGGGAAATTTGGCAAGTACCTCCCATGTTTTCTGCCATTAAAGTTGGAGGTGAGAAGATGTACGAGAAAGCAAGAAGGGGAGAAAGTATTGAGCTCTCCCCAAGACGGATATCAATTTTCAAATTTGATATTGAACGTAGTTTAGATGACAGGCAAAGCTTGATTTTTCGAGTGACATGCTCTAAAGGAACATACATACGGTCACCTTGTGCAGATCTTGGGAAGGTTCTTGGCAACTATTTCAAAAAAAATACCACCTATTGCAATTACCCTTTCTTAAATTCTTGCTTTGAGCAAGGAAAAAATTTAGGCCATGAATATATTAGGGGCTTGAGAAAGTTGGCGTTGTATTTTATACACTTGACCTCAGCACCTGAATTATTCATCTAGTTCTTCACATCTCACTCATTTATTCATCTAGTTCTCCACATCTCACTTCATCCAACTTGAGGCTGTCTGGTGCTTGTATCACCCTTATCCTGCGAACTAATTTGTGATTTGAAATTATCGATTGAACTTGCTACCGTTTTTGTGAGTGTGTGCAATGTTTCAAAAGGTTTTTGAGGCATAGTCCATGATGCTCACCTGAGGTTGAGGCTCGAACTTTTAGCCTCAAAGACTTGCACTTTCTTTAGATCATAAGTGGCTGTGGCTTCTTTAGGCTTCTTATAGAGAGGCCTGTGTTCATGAGAATGCATCCAGGTTTGCAGCCTTTACCTCATGAAATAGCCAGAGGAATATATTTAACTTGTTAACTAAAATTATATTAAGAAAATTTGCTTAGACTTTAATGTTTTAATATACCATGAGTTTCGGTAACTTAGGCCCTTACTAGTTTTACCATCAAGGTAAAAAAGAACTTTGAAGCAAAGTGAAGGATGAGTTGAGTCTATTATGATATTTATTTAAGTGACATTTGACATGCAGGAGTTTCTTTTCCTCCTTTTTTGTACTTCTTGATAATCAATTTAATTTAACAATACTTGATCTTGGTAGGAGTGGGAGAGGGAATGATATCTAATATTGATAGGGTTTGGGTTAGTTACTTTACCTCTATATTACTTGCTGACTTAGCTTAAAAAATGAAATTATTGATAAATGAAATTAGGGGGAAATGTTAGTTCTTTCCAGTTAAGAGGCCATTTCTGATGCCATTGCATTTCATGCTTGTTAACATCAGCTGATGGTGATGAGTATGAGTATATTTAGAGGATCCTATATTCATAATCTGATAATCTAA ATGAATGACAAAGGGTTGGTTTTCTTTGATGAGGGGAAACCAGAGAAGGATAATAAGGGGTCGGTGAAAGATGTGGCAGAGAAGAAGGTGGAGGAGTTCTTCAAGTGTTTGAAGAAAGTTCCAGCTAAAGATTCTGAAATTGGTCAGATGGATCCATATCTTTTAACGAGGCATACGGAGCTCCCTGCCAAATGGGATAGTCCTTCTGGGACAGTGGTTTTGCTGAACAAACCTAAAGGGTGGACTTCATTTACGGTATGTGGAAAACTTTGGCGCCTAGTCAAAGTGAAAAAGGTAGGTCATGCAGGTACTCTTGATCCTATGGCTACTGGTTTGTTGATAGTGTGTGTTGGTAAAGCGATGAAGTTGGTAGACAGATATCAAGGTATGAGCTACAGTGGAGTTTTCCGTTTAGGAGAGGCTACTTCAACTTGGGATGCTGATTCACCGGTAATTCAGCGAGAGCCTTGGGAGCACATCAAAGATGATGACATCAAAAAAGCTGCTGCCTCTTTTTGTGGGGAAATTTGGCAAGTACCTCCCATGTTTTCTGCCATTAAAGTTGGAGGAGTGGGAGAGGGAATGATATCTAATATTGATAGGGTTTGGCTGATGGTGATGAGTATGAGTATATTTAGAGGATCCTATATTCATAATCTGATAATCTAA ATGAATGACAAAGGGTTGGTTTTCTTTGATGAGGGGAAACCAGAGAAGGATAATAAGGGGTCGGTGAAAGATGTGGCAGAGAAGAAGGTGGAGGAGTTCTTCAAGTGTTTGAAGAAAGTTCCAGCTAAAGATTCTGAAATTGGTCAGATGGATCCATATCTTTTAACGAGGCATACGGAGCTCCCTGCCAAATGGGATAGTCCTTCTGGGACAGTGGTTTTGCTGAACAAACCTAAAGGGTGGACTTCATTTACGGTATGTGGAAAACTTTGGCGCCTAGTCAAAGTGAAAAAGGTAGGTCATGCAGGTACTCTTGATCCTATGGCTACTGGTTTGTTGATAGTGTGTGTTGGTAAAGCGATGAAGTTGGTAGACAGATATCAAGGTATGAGCTACAGTGGAGTTTTCCGTTTAGGAGAGGCTACTTCAACTTGGGATGCTGATTCACCGGTAATTCAGCGAGAGCCTTGGGAGCACATCAAAGATGATGACATCAAAAAAGCTGCTGCCTCTTTTTGTGGGGAAATTTGGCAAGTACCTCCCATGTTTTCTGCCATTAAAGTTGGAGGAGTGGGAGAGGGAATGATATCTAATATTGATAGGGTTTGGCTGATGGTGATGAGTATGAGTATATTTAGAGGATCCTATATTCATAATCTGATAATCTAA MNDKGLVFFDEGKPEKDNKGSVKDVAEKKVEEFFKCLKKVPAKDSEIGQMDPYLLTRHTELPAKWDSPSGTVVLLNKPKGWTSFTVCGKLWRLVKVKKVGHAGTLDPMATGLLIVCVGKAMKLVDRYQGMSYSGVFRLGEATSTWDADSPVIQREPWEHIKDDDIKKAAASFCGEIWQVPPMFSAIKVGGVGEGMISNIDRVWLMVMSMSIFRGSYIHNLII Homology
BLAST of ClCG03G009873 vs. NCBI nr
Match: XP_038891059.1 (uncharacterized protein LOC120080471 [Benincasa hispida]) HSP 1 Score: 366.7 bits (940), Expect = 1.4e-97 Identity = 178/192 (92.71%), Postives = 182/192 (94.79%), Query Frame = 0
BLAST of ClCG03G009873 vs. NCBI nr
Match: XP_022993331.1 (uncharacterized protein LOC111489372 [Cucurbita maxima] >XP_022993332.1 uncharacterized protein LOC111489372 [Cucurbita maxima]) HSP 1 Score: 364.0 bits (933), Expect = 9.2e-97 Identity = 176/192 (91.67%), Postives = 182/192 (94.79%), Query Frame = 0
BLAST of ClCG03G009873 vs. NCBI nr
Match: XP_022938741.1 (uncharacterized protein LOC111444875 [Cucurbita moschata] >KAG7016215.1 truB [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 363.6 bits (932), Expect = 1.2e-96 Identity = 176/192 (91.67%), Postives = 181/192 (94.27%), Query Frame = 0
BLAST of ClCG03G009873 vs. NCBI nr
Match: KAG6578676.1 (hypothetical protein SDJN03_23124, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 362.5 bits (929), Expect = 2.7e-96 Identity = 175/192 (91.15%), Postives = 181/192 (94.27%), Query Frame = 0
BLAST of ClCG03G009873 vs. NCBI nr
Match: KAA0037597.1 (TruB_N domain-containing protein [Cucumis melo var. makuwa] >TYK09336.1 TruB_N domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 361.3 bits (926), Expect = 6.0e-96 Identity = 174/192 (90.62%), Postives = 181/192 (94.27%), Query Frame = 0
BLAST of ClCG03G009873 vs. ExPASy Swiss-Prot
Match: Q5LJ29 (tRNA pseudouridine synthase B OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343) OX=272559 GN=truB PE=3 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 3.7e-24 Identity = 60/129 (46.51%), Postives = 79/129 (61.24%), Query Frame = 0
BLAST of ClCG03G009873 vs. ExPASy Swiss-Prot
Match: Q650L8 (tRNA pseudouridine synthase B OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=truB PE=3 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 3.7e-24 Identity = 60/129 (46.51%), Postives = 79/129 (61.24%), Query Frame = 0
BLAST of ClCG03G009873 vs. ExPASy Swiss-Prot
Match: A1R520 (tRNA pseudouridine synthase B OS=Paenarthrobacter aurescens (strain TC1) OX=290340 GN=truB PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 1.8e-23 Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 0
BLAST of ClCG03G009873 vs. ExPASy Swiss-Prot
Match: A6LEL7 (tRNA pseudouridine synthase B OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152) OX=435591 GN=truB PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 1.8e-23 Identity = 59/133 (44.36%), Postives = 82/133 (61.65%), Query Frame = 0
BLAST of ClCG03G009873 vs. ExPASy Swiss-Prot
Match: Q47RU8 (tRNA pseudouridine synthase B OS=Thermobifida fusca (strain YX) OX=269800 GN=truB PE=3 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 3.1e-23 Identity = 55/122 (45.08%), Postives = 80/122 (65.57%), Query Frame = 0
BLAST of ClCG03G009873 vs. ExPASy TrEMBL
Match: A0A6J1JSH8 (uncharacterized protein LOC111489372 OS=Cucurbita maxima OX=3661 GN=LOC111489372 PE=3 SV=1) HSP 1 Score: 364.0 bits (933), Expect = 4.4e-97 Identity = 176/192 (91.67%), Postives = 182/192 (94.79%), Query Frame = 0
BLAST of ClCG03G009873 vs. ExPASy TrEMBL
Match: A0A6J1FDZ7 (uncharacterized protein LOC111444875 OS=Cucurbita moschata OX=3662 GN=LOC111444875 PE=3 SV=1) HSP 1 Score: 363.6 bits (932), Expect = 5.8e-97 Identity = 176/192 (91.67%), Postives = 181/192 (94.27%), Query Frame = 0
BLAST of ClCG03G009873 vs. ExPASy TrEMBL
Match: A0A5A7T7S0 (TruB_N domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00150 PE=3 SV=1) HSP 1 Score: 361.3 bits (926), Expect = 2.9e-96 Identity = 174/192 (90.62%), Postives = 181/192 (94.27%), Query Frame = 0
BLAST of ClCG03G009873 vs. ExPASy TrEMBL
Match: A0A1S3C8B0 (uncharacterized protein LOC103498118 OS=Cucumis melo OX=3656 GN=LOC103498118 PE=3 SV=1) HSP 1 Score: 361.3 bits (926), Expect = 2.9e-96 Identity = 174/192 (90.62%), Postives = 181/192 (94.27%), Query Frame = 0
BLAST of ClCG03G009873 vs. ExPASy TrEMBL
Match: A0A0A0KP03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G522940 PE=3 SV=1) HSP 1 Score: 359.8 bits (922), Expect = 8.4e-96 Identity = 175/192 (91.15%), Postives = 181/192 (94.27%), Query Frame = 0
BLAST of ClCG03G009873 vs. TAIR 10
Match: AT5G14460.1 (Pseudouridine synthase family protein ) HSP 1 Score: 279.3 bits (713), Expect = 2.8e-75 Identity = 145/197 (73.60%), Postives = 160/197 (81.22%), Query Frame = 0
BLAST of ClCG03G009873 vs. TAIR 10
Match: AT3G57150.1 (homologue of NAP57 ) HSP 1 Score: 67.8 bits (164), Expect = 1.3e-11 Identity = 50/158 (31.65%), Postives = 78/158 (49.37%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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