ClCG03G009810 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G009810
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr03: 15518538 .. 15522144 (+)
RNA-Seq Expression	ClCG03G009810
Synteny	ClCG03G009810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCCTCTACAACTTGGATGTGCTTGTCTTAAGTCCAGGATTTGGATTCCGGATTTGGCACTTATGACCCCAACATTCCCTTGCAAACTAGGCGCACTAGTAAGTAATGTATTGGCTCAAGTCCATGATTTGGATCAAGATTTGAAATTCGAATTTGGCAATTAAAGCCCCAACATTCTCCTACATCCCTTGCGGCCTGGGTGCGATGGTATACCATGAAAAAATATTCACATAGCATATGGATAATCATCAAGGTACATGAATGTAGTGGTTTGAAAACTACTTCCAACATAAAACAACTTTTCATCCTCAATTACTATAAAACCATATTTCTCATACTTTCTAAAATCATTCTAGAACCACGCTCTTTCTTTATAAACAAACATTTTAGAAACCTCAAACCTTCATGAGAAATACGTTTTCCTTAAATATTTCAGATCAATGTCTTACTCAAGATCGTAATTTAAAAATCAGTGCTCTAATTGAGATCACTATAATTCACATTTCAATGTACATAAATCCAAAATTAATGATCAATGAATTATTCTGGATTTGAAAGTCAAGTCATTTCCCAAGATAGCACATATCTCATAGTAATCAATTTTAAACTTTTGCCAAATGGCCGAGAGATTTCTAGAAACTTATTTTTCATAATCTCCAATAATACAAATGAGTAATTATAGCTAAAAGTGTACATAAACACAAATCCCTTGAAATTCAATTACCAAACCCAAGCATTCACAAATAAGTCTCTTTCAATCAATTATGAAGTGCATAAATTTCTTGAAATCTCAAATAACCAAATCAATGGTAAGAACAGAAATCATATTTGTTTCAAACACTAGAAGAAATTATAAATCGCTAACATAGCAAAAATATTTGCAAAATAGCCACTCACTATACTATTGATGAGAAACTTCAGGTTGTAAGCTATTTTGATTTCTAATTGGCAAGAAGAAATGAAAATTTAACCAAATTTTTGTAAGGATTTCGAATCACCAATTAAAGAATAGTATCGCTTATTTAGCACCGAATTTTAATTGCCATCTAATATGAATAATGACTATGGTTTCCTATGAAGTCAAGCTTAAGTCCACCATGTCCTTCTTCATTCTCTCTCCAATGACTTCTTTTTGTACCTTGATATACTATCAATGACAAAATGACCTATCATTTTCATTCACCATTCATCATCTTCTTCCTCCTTATTCAATCTACCAAGTTTTTCCATATTTTCCTTTCCTCTTTTTATTTTTATTTTTTTATTATTTATTTATTTTATTTTTTTCTTCCTCCATTCCAACACTTCTCTTCTTTACAAGTCTTCTCATAATGACCTCAAAGAAAGAACATAACATAAAAAAATAACCTCACACAAGTAAAAAAATCTATTTTTCTTTTTGCCTCCTTCTCAAACATTCAAAATCCAATAACCCGTACATCCAATGTGCATCCGATAGTTAGAAGACCAAAAACTGGTCTTACAAATTATTTTGTCTATAATTTTGAGACAAAATTCTAATTAAGAAATGAATTTAAACTTTCCTCTTGCATGTTTAAGGGCAGAAGCAAACAATACAAAATATTATCCTCCTTTGAAAAATTTCATCATCGAAATTTAATCATGTAAGTCAATATAATAGTTGCAACAGGGAGGGGGAGGGAATTGTACGGAAGGCCTGAATTGGGAGGGGAAATTGTATGGATGGCCTAAATTAGGAAACCCAAATGAAATTAGGCTAATTATTCAAATGCACACGAAATTTGACCTTCTGCTTACGTCAGCTACGTGTGAAAATACCAATTTGTCCCCAAAATGCGCGCAAGGACCGCAGGCAACCACGATTTCTCATTTCTTCTTCTCGCTCGACTTTCTTCATCTCGTTTCTTCCTTTCACTCATTATCAAAATTTCGTGCGCGTTTTGCTTTCTATTGCTAATTGCTTGAAACTGCAAAAAACTCGGGTTCTTTCCCATCAAATTAAGGAGTAGAGTTTCCTAACTAAGTTTACACTAGTTTAAATAAAGCACAAAATGTGGAAGAAAACCATTAGATAGGACTCATTGGCTGTGGATAACCCATCTTCTAAAGTTTTAGAGGCTGTTGAATCATCATATACATTCTGTTACCCATGCAAAGTAAGTGAATGTTAAGCCTTTTCTTTGTTTATTGTTTATCACGTGATAGAAAATATAGGCGAGAGGAAATAACGAGAGGAAGAAAGTGGAGCGAGAGAAAAACACGAGAGGAAGAAAATGTCAGTTCTTCAGAGTTCAATATCATAATGAGGGTGAAATACAAGTTAGATTCTGAATGTCCTTCAATTTGCCTCATAGATGATGGGGATGTTAGATTTCTACTCTCATAACTGGATCGTAACAGACCTCCAATATTTGTCAGTTTGAAAAGACCAATGAAGAGCAAACATTTGGAGGGACATTTGCAGAACATGAACCCATGTTGGCATCAAGTAGCAATGATGAGTCAGCTATTTTTTCATCTATAGTCTCTATGGAAAATGACAACTTGAACCCATGGATAGGTAGCGAACATTATTCAAGCCGGAAGCAAGGATGTACTAAAATCATTGGTGATGCTATTATTGAGAGTCCCTCACCCCATCACACTTAATATTCGACTACCTCTAGTGTGATTGGTGGTCCTTTTATTGATGATGATATTGTTGGGAGTACCTCACCACAACCCGTACATGTCTAACTGAATGTATTGAAATGGTGGGTAGTCCTCACCCCATCCCAATACATATTCAACTACATGCACTAGAGTGGGGGGTCCTTCTGTGTTGAACGTACCTCACCCCATCACACTCAATATCTGACTACCCATGATGTGATGGGTGGTTCTTCTATTGATGATGATACTGTTGAGAGTACCTCACCACAACCTAATACACGTCCAACTGAATGTACTGAAATGGTGGGTGGTCCTTCTTTTGATGGTAGTACCTCACCCCATCCCAATATTACATGCACTAGAGTGGATGGTCCTTCTGTGTTAAATGTACCTCAGCAGGATCCAATTATATGCAATGATTTTGGGCATTTCATTGGAAACACCCCTTGGCAGATGGAGGCCCCACAACTGATAGAGGCAGTGGTAGAGTGTGGTCATTTTGTGAGACAAACAGAAGCAAGACCATCTGTGAGAACTACAAGAACAGGAGATATCATTATGCAATCGGTGCCAGCGTTGGTGTGGATGTTGAGGTTGGTCAGATATTGATTTTTGTAAGAATGACGTGAAGATGAGATTATCCATGCTAGCCATCAAGAATAATTTTGAGATGCGAGTAAGAAAATCAAATAAAAACCTCTACAATGTGCGATGTATCCATGAGACCTACAAGTGGGCAGTTCGTGCAGTTAGAATAGAGGGATGTGATATATTCAAGAGAACTAAGTATATAGCCATAACACGTGCTCTATTGAGATTTTGAATCATGACCACCGCGAGGCAGTAATTGGGAAACTCATTAAGGACAAGTTCGGAGTTGGTCGAGCCAAGAAACAATGCCATATTATTGAAGAATATACGTCAAGACTATGGTTTGAATTTCAGCTATTACAAGACATGGCATGCTAG

mRNA sequence

ATGCATCCTCTACAACTTGGATGTGCTTGTCTTAAGTCCAGGATTTGGATTCCGGATTTGGCACTTATGACCCCAACATTCCCTTGCAAACTAGGCGCACTAGACTCATTGGCTGTGGATAACCCATCTTCTAAAGTTTTAGAGGCTGTTGAATCATCATATACATTCTGTTACCCATGCAAAGCGAGAGGAAATAACGAGAGGAAGAAAGTGGAGCGAGAGAAAAACACGAGAGGAAGAAAATGTCAGTTCTTCAGAGTTCAATATCATAATGAGGGTGAAATACAAACCTCCAATATTTGTCAGTTTGAAAAGACCAATGAAGAGCAAACATTTGGAGGGACATTTGCAGAACATGAACCCATGTTGGCATCAAGTAGCAATGATGAGTCAGCTATTTTTTCATCTATAGTAGCGAACATTATTCAAGCCGGAAGCAAGGATGTACTAAAATCATTGGTGATGCTATTATTGAGAGTCCCTCACCCCATCACACTTAATATTCGACTACCTCTAAGTGGGGGGTCCTTCTGTGTTGAACGTACCTCACCCCATCACACTCAATATCTGACTACCCATGATGTGATGGGTGGTTCTTCTATTGATGATGATACTGTTGAGAGTACCTCACCACAACCTAATACACGTCCAACTGAATGTACTGAAATGGTGGGTGGTCCTTCTTTTGATGGTAGTACCTCACCCCATCCCAATATTACATGCACTAGAGTGGATGGTCCTTCTGTGTTAAATGTACCTCAGCAGGATCCAATTATATGCAATGATTTTGGGCATTTCATTGGAAACACCCCTTGGCAGATGGAGGCCCCACAACTGATAGAGGCAGTGGTAGAGTGTGGTCATTTTGTGAGACAAACAGAAGCAAGACCATCTGTGAGAACTACAAGAACAGGAGATATCATTATGCAATCGGTGCCAGCGTTGGTGTGGATGTTGAGGTTGATGAGATTATCCATGCTAGCCATCAAGAATAATTTTGAGATGCGAACCTACAAGTGGGCAGTTCGTGCAGTTAGAATAGAGGGATGTGATATATTCAAGAGAACTAAGTATATAGCCATAACACTAATTGGGAAACTCATTAAGGACAAGTTCGGAGTTGGTCGAGCCAAGAAACAATGCCATATTATTGAAGAATATACGTCAAGACTATGGTTTGAATTTCAGCTATTACAAGACATGGCATGCTAG

Coding sequence (CDS)

ATGCATCCTCTACAACTTGGATGTGCTTGTCTTAAGTCCAGGATTTGGATTCCGGATTTGGCACTTATGACCCCAACATTCCCTTGCAAACTAGGCGCACTAGACTCATTGGCTGTGGATAACCCATCTTCTAAAGTTTTAGAGGCTGTTGAATCATCATATACATTCTGTTACCCATGCAAAGCGAGAGGAAATAACGAGAGGAAGAAAGTGGAGCGAGAGAAAAACACGAGAGGAAGAAAATGTCAGTTCTTCAGAGTTCAATATCATAATGAGGGTGAAATACAAACCTCCAATATTTGTCAGTTTGAAAAGACCAATGAAGAGCAAACATTTGGAGGGACATTTGCAGAACATGAACCCATGTTGGCATCAAGTAGCAATGATGAGTCAGCTATTTTTTCATCTATAGTAGCGAACATTATTCAAGCCGGAAGCAAGGATGTACTAAAATCATTGGTGATGCTATTATTGAGAGTCCCTCACCCCATCACACTTAATATTCGACTACCTCTAAGTGGGGGGTCCTTCTGTGTTGAACGTACCTCACCCCATCACACTCAATATCTGACTACCCATGATGTGATGGGTGGTTCTTCTATTGATGATGATACTGTTGAGAGTACCTCACCACAACCTAATACACGTCCAACTGAATGTACTGAAATGGTGGGTGGTCCTTCTTTTGATGGTAGTACCTCACCCCATCCCAATATTACATGCACTAGAGTGGATGGTCCTTCTGTGTTAAATGTACCTCAGCAGGATCCAATTATATGCAATGATTTTGGGCATTTCATTGGAAACACCCCTTGGCAGATGGAGGCCCCACAACTGATAGAGGCAGTGGTAGAGTGTGGTCATTTTGTGAGACAAACAGAAGCAAGACCATCTGTGAGAACTACAAGAACAGGAGATATCATTATGCAATCGGTGCCAGCGTTGGTGTGGATGTTGAGGTTGATGAGATTATCCATGCTAGCCATCAAGAATAATTTTGAGATGCGAACCTACAAGTGGGCAGTTCGTGCAGTTAGAATAGAGGGATGTGATATATTCAAGAGAACTAAGTATATAGCCATAACACTAATTGGGAAACTCATTAAGGACAAGTTCGGAGTTGGTCGAGCCAAGAAACAATGCCATATTATTGAAGAATATACGTCAAGACTATGGTTTGAATTTCAGCTATTACAAGACATGGCATGCTAG

Protein sequence

MHPLQLGCACLKSRIWIPDLALMTPTFPCKLGALDSLAVDNPSSKVLEAVESSYTFCYPCKARGNNERKKVEREKNTRGRKCQFFRVQYHNEGEIQTSNICQFEKTNEEQTFGGTFAEHEPMLASSSNDESAIFSSIVANIIQAGSKDVLKSLVMLLLRVPHPITLNIRLPLSGGSFCVERTSPHHTQYLTTHDVMGGSSIDDDTVESTSPQPNTRPTECTEMVGGPSFDGSTSPHPNITCTRVDGPSVLNVPQQDPIICNDFGHFIGNTPWQMEAPQLIEAVVECGHFVRQTEARPSVRTTRTGDIIMQSVPALVWMLRLMRLSMLAIKNNFEMRTYKWAVRAVRIEGCDIFKRTKYIAITLIGKLIKDKFGVGRAKKQCHIIEEYTSRLWFEFQLLQDMAC

Homology

[Close]

BLAST of ClCG03G009810 vs. NCBI nr
Match: XP_038905828.1 (uncharacterized protein LOC120091780 [Benincasa hispida] >XP_038905829.1 uncharacterized protein LOC120091780 [Benincasa hispida])

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-06
Identity = 39/99 (39.39%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 322 MRLSMLAIKNNFEM----------------RTYKWAVRAVRIEGCDIFKRTKY------- 381
           MRLS+L+I  NFE                 +T KW++RAV++EG DIFK TKY       
Sbjct: 144 MRLSILSINKNFEFKVGKSTKSLFTIKCIGKTCKWSLRAVKMEGSDIFKITKYCSSHTCS 203

Query: 382 ----------IAITLIGKLIKDKF-GVGRAKKQCHIIEE 387
                     +  T++G+LI+DKF G+GR  K CHI+E+
Sbjct: 204 IGILNHDHRQVTATVVGQLIEDKFMGIGRIYKPCHIVED 242

[Close]

BLAST of ClCG03G009810 vs. NCBI nr
Match: XP_038902336.1 (uncharacterized protein LOC120088970 [Benincasa hispida])

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-05
Identity = 39/99 (39.39%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 322 MRLSMLAIKNNFEMR----------------TYKWAVRAVRIEGCDIFKRTKYI------ 381
           MRLS+L I NNFE +                  KW++RAV+I GCDIFK  KY+      
Sbjct: 59  MRLSILCINNNFEYKVRKSTKSLFTVKCIEDNCKWSLRAVKISGCDIFKIMKYMRSHTCF 118

Query: 382 -----------AITLIGKLIKDKF-GVGRAKKQCHIIEE 387
                       I ++G+LIKDKF G+GR  K  HI+E+
Sbjct: 119 IGILNHDHRQATIVVVGELIKDKFTGIGRVYKPRHIVED 157

[Close]

BLAST of ClCG03G009810 vs. NCBI nr
Match: XP_038891670.1 (uncharacterized protein LOC120081063 [Benincasa hispida])

HSP 1 Score: 59.3 bits (142), Expect = 8.8e-05
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 338 YKWAVRAVRIEGCDIFKRTKYI-----------------AITLIGKLIKDKF-GVGRAKK 387
           YKW++RAV+I GCDIFK TKY+                    ++GKLIKDKF G+GR  K
Sbjct: 51  YKWSLRAVKIPGCDIFKITKYMRSHTCSIGILNHDHRQATTAVVGKLIKDKFIGIGRVYK 110

[Close]

BLAST of ClCG03G009810 vs. NCBI nr
Match: XP_038882314.1 (uncharacterized protein LOC120073555 [Benincasa hispida])

HSP 1 Score: 57.4 bits (137), Expect = 3.3e-04
Identity = 60/213 (28.17%), Postives = 101/213 (47.42%), Query Frame = 0


Query: 200 SIDDDTVESTSPQPNTRPTECTEMVGGPSFDGSTSPHPNITCTRVDGPSVLNVPQQDPII 259
           SID+D + +   +   R T+C   V G       +    + C    GPS     + DP +
Sbjct: 9   SIDNDNICAADLE---RETQCNRPVPGNERSAGLN---FMDC----GPS----EEHDPFV 68

Query: 260 CNDFG----HFIGNTPWQMEAPQLIEAVVECGHFVRQTEARPSVRTTRTGDIIMQSVPAL 319
            ++      +F+  +P ++  P +  AV E      ++    S+ + R G++I  +   L
Sbjct: 69  VDNERSEGLNFMDCSPSEVHRPAM--AVTE------RSGGLNSMSSYRRGELICLAPLHL 128

Query: 320 VWMLRLMRLSMLAIKNNFEMR----TYKWAVRAVRIEGCDIFKRTKYI------------ 379
             ML+L++ S   IK+ F ++      KW++RA++I  CDIFK TKY+            
Sbjct: 129 RQMLKLVKKS---IKSLFTVKCIEDNCKWSLRAIKIPRCDIFKITKYMWSHTCSIGILNH 188

Query: 380 -----AITLIGKLIKDKF-GVGRAKKQCHIIEE 387
                   ++G+LIKDKF G+ R  K CHI+E+
Sbjct: 189 DHRQATTAVVGELIKDKFTGIERVYKSCHIVED 196

[Close]

BLAST of ClCG03G009810 vs. NCBI nr
Match: XP_038882374.1 (uncharacterized protein LOC120073641 [Benincasa hispida])

HSP 1 Score: 55.8 bits (133), Expect = 9.7e-04
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 339 KWAVRAVRIEGCDIFKRTKYI-----------------AITLIGKLIKDKF-GVGRAKKQ 387
           KW+ RAV+I GCDIFK TKY+                   T++ +LIKDKF  +GR  K 
Sbjct: 101 KWSFRAVKIPGCDIFKITKYMQSHTCSIGILNHDHRQETTTVVDELIKDKFTSIGRVYKP 160

The following BLAST results are available for this feature:

BLAST of ClCG03G009810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905828.1	1.2e-06	39.39	uncharacterized protein LOC120091780 [Benincasa hispida] >XP_038905829.1 unchara...	[more]
XP_038902336.1	1.0e-05	39.39	uncharacterized protein LOC120088970 [Benincasa hispida]	[more]
XP_038891670.1	8.8e-05	47.76	uncharacterized protein LOC120081063 [Benincasa hispida]	[more]
XP_038882314.1	3.3e-04	28.17	uncharacterized protein LOC120073555 [Benincasa hispida]	[more]
XP_038882374.1	9.7e-04	45.45	uncharacterized protein LOC120073641 [Benincasa hispida]	[more]

BLAST of ClCG03G009810 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G009810 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G009810 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G009810.1	ClCG03G009810.1	mRNA