ClCG03G009210 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G009210
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr03: 12014364 .. 12015319 (-)
RNA-Seq ExpressionClCG03G009210
SyntenyClCG03G009210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACATCCCTCGTAAAAAGAAAGAAGCTCCAGGTGGGCATTATTTGGTGCATTTTCACTCCATTTCTAAAATGTCGATGCAACTTCACTCCATCTCGAAAATGCTGGTGCAGCTTCGCTCTATCTGCAAAATGTTGATACAGCTTCGCGCCATCTCCAAAATGTTGGTGCATCTTCGCTACATCTCCAAAATATTGATGCAACTTTACTCCATCTCCAAAATGCTGGTGCAGCTTCACTCCATCTCCAAAATGCCGGTTCAGCTTCGCGATATCTCCAAAATGTTAGTGCATCTTCGCTCCATCTCCAAAATGATAATGTAGTTTTGCTCCATCTCCAGAATGTTGGTGCGACTTCGCTCTATTTCCAAAATACTGGTGCAACTTGTTCCATCTCCAGAATGTTGGTGCAGCTTGTTCCATCTCCAGAATGTTGGCTCCATCTCCAAATACGTTGGTGCAGCTTCACTCCATCTCCAAATATGCTGAAGCAACTTTGCTCCATCTTCAAAGTGTTGGTGCCGCTTCACTTCATCTCCAAAATGTTGGTGCAGTTTCGCTTCATCTCTAAAATGCTGGTGCGGCTTTACTCCATCTCCAAAGTGTTGATGCTGTTTCAGGCCATTTTCAAAATGTTGGTGCGGCTTCGCTCCATCACCAAAATGTTGGTGCTACTTGGTCTCCTCTACGAAATGTTGGTGCAACTTTGCTCCTACTTCGAAATGTCAGTGCAGCTTCATTCCTCCTCCAAAATGTTGGTGCAGCTCCACTTGTCCTCCAAAATGTTGGTGCAACTCTGCTCCTCCTTCGAGATTTTAGTGCACCTCCGCTCATCCTCCGAATGTTGGTGTAACTCAAGTTCGATGCTTTTTTGCTACTTTTTTACCTCCAAGTTTGATGGTTATGCGGTTGCTTCTCCATCTCCAAGTTCGATGGTTACACGCATTGTTGCTTGA

mRNA sequence

ATGTACATCCCTCGTAAAAAGAAAGAAGCTCCAGCTTCGCTCTATCTGCAAAATGTTGATACAGCTTCGCGCCATCTCCAAAATGTTGGTGCATCTTCGCTACATCTCCAAAATATTGATGCAACTTTACTCCATCTCCAAAATGCTGGTGCAGCTTCACTCCATCTCCAAAATGCCGGTTCAGCTTCGCGATATCTCCAAAATGTTAGTGCATCTTCGCTCCATCTCCAAAATGATAATGTAGTTTTGCTCCATCTCCAGAATGTTGGTGCGACTTCGCTCTATTTCCAAAATACTGGTGCAACTTGTTCCATCTCCAGAATGTTGGTGCAGCTTGTTCCATCTCCAGAATGTTGGCTCCATCTCCAAATACGTTGGTGCAGCTTCACTCCATCTCCAAATATGCTGAAGCAACTTTGCTCCATCTTCAAAGTGTTGGTGCCGCTTCACTTCATCTCCAAAATGTTGGTGCAGTTTCGCTTCATCTCTAAAATGCTGGTGCGGCTTTACTCCATCTCCAAAGTGTTGATGCTGTTTCAGGCCATTTTCAAAATGTTGGTGCGGCTTCGCTCCATCACCAAAATGTTGGTGCTACTTGGTCTCCTCTACGAAATGTTGGTGCAACTTTGCTCCTACTTCGAAATGTCAGTGCAGCTTCATTCCTCCTCCAAAATGTTGGTGCAGCTCCACTTGTCCTCCAAAATGTTGGTGCAACTCTGCTCCTCCTTCGAGATTTTAGTGCACCTCCGCTCATCCTCCGAATGTTGGTGTAACTCAAGTTCGATGCTTTTTTGCTACTTTTTTACCTCCAAGTTTGATGGTTATGCGGTTGCTTCTCCATCTCCAAGTTCGATGGTTACACGCATTGTTGCTTGA

Coding sequence (CDS)

ATGTACATCCCTCGTAAAAAGAAAGAAGCTCCAGCTTCGCTCTATCTGCAAAATGTTGATACAGCTTCGCGCCATCTCCAAAATGTTGGTGCATCTTCGCTACATCTCCAAAATATTGATGCAACTTTACTCCATCTCCAAAATGCTGGTGCAGCTTCACTCCATCTCCAAAATGCCGGTTCAGCTTCGCGATATCTCCAAAATGTTAGTGCATCTTCGCTCCATCTCCAAAATGATAATGTAGTTTTGCTCCATCTCCAGAATGTTGGTGCGACTTCGCTCTATTTCCAAAATACTGGTGCAACTTGTTCCATCTCCAGAATGTTGGTGCAGCTTGTTCCATCTCCAGAATGTTGGCTCCATCTCCAAATACGTTGGTGCAGCTTCACTCCATCTCCAAATATGCTGAAGCAACTTTGCTCCATCTTCAAAGTGTTGGTGCCGCTTCACTTCATCTCCAAAATGTTGGTGCAGTTTCGCTTCATCTCTAAAATGCTGGTGCGGCTTTACTCCATCTCCAAAGTGTTGATGCTGTTTCAGGCCATTTTCAAAATGTTGGTGCGGCTTCGCTCCATCACCAAAATGTTGGTGCTACTTGGTCTCCTCTACGAAATGTTGGTGCAACTTTGCTCCTACTTCGAAATGTCAGTGCAGCTTCATTCCTCCTCCAAAATGTTGGTGCAGCTCCACTTGTCCTCCAAAATGTTGGTGCAACTCTGCTCCTCCTTCGAGATTTTAGTGCACCTCCGCTCATCCTCCGAATGTTGGTGTAACTCAAGTTCGATGCTTTTTTGCTACTTTTTTACCTCCAAGTTTGATGGTTATGCGGTTGCTTCTCCATCTCCAAGTTCGATGGTTACACGCATTGTTGCTTGA

Protein sequence

MYIPRKKKEAPASLYLQNVDTASRHLQNVGASSLHLQNIDATLLHLQNAGAASLHLQNAGSASRYLQNVSASSLHLQNDNVVLLHLQNVGATSLYFQNTGATCSISRMLVQLVPSPECWLHLQIRWCSFTPSPNMLKQLCSIFKVLVPLHFISKMLVQFRFISKMLVRLYSISKVLMLFQAIFKMLVRLRSITKMLVLLGLLYEMLVQLCSYFEMSVQLHSSSKMLVQLHLSSKMLVQLCSSFEILVHLRSSSECWCNSSSMLFCYFFTSKFDGYAVASPSPSSMVTRIVA
Homology
[Close]
BLAST of ClCG03G009210 vs. NCBI nr
Match: GFU00076.1 (putative oxidoreductase GLYR1 homolog [Trichonephila clavipes])

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-05
Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 13  SLYLQNVDTASRHLQNVGASSLHLQNIDATLLHLQNAGAASLHLQNAGSASRYLQNVSAS 72
           SL +QN+D  S ++QN+   SL++QNID   L++QN    SL++QN  S S  +QN+ + 
Sbjct: 276 SLNIQNIDCDSLNIQNIDCDSLNIQNIDCDSLNIQNIDCDSLNIQNIDSDSLNIQNIDSD 335

Query: 73  SLHLQNDNVVLLHLQNVGATSL 95
           SL++QN +   L++QN+   SL
Sbjct: 336 SLNIQNIDSDSLNIQNIDDDSL 357

[Close]
BLAST of ClCG03G009210 vs. NCBI nr
Match: TMS04833.1 (Protein YIPF3 [Larimichthys crocea])

HSP 1 Score: 59.7 bits (143), Expect = 4.9e-05
Identity = 32/91 (35.16%), Postives = 50/91 (54.95%), Query Frame = 0 

Query: 12  ASLYLQNVDTASRHLQNVGASSLHLQNIDATLLHLQNAGAASLHLQNAGSASRYLQNVSA 71
           A ++L N+DTA  HL N+  + +HL NID   +HL N   A +HL N  +   +L N+  
Sbjct: 216 ARVHLVNIDTARVHLVNIDTARVHLVNIDTPRVHLVNIDTARVHLVNIDTTRVHLVNIDT 275

Query: 72  SSLHLQNDNVVLLHLQNVGATSLYFQNTGAT 103
           + +HL N +   +HL N+  T ++  N   T
Sbjct: 276 ARVHLVNIDTARVHLVNIDTTRVHLVNIDTT 306

[Close]
BLAST of ClCG03G009210 vs. NCBI nr
Match: TNN54915.1 (putative PPE family protein PPE16 [Liparis tanakae])

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-04
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 0 

Query: 16  LQNVDTASRHLQNVGASSLHLQNIDATLLHLQNAGAASLHLQNAGSASRYLQNVSASSLH 75
           LQNV   +  LQNVG  ++ LQN+    + LQN G  ++ LQN G  +  LQN+S  ++ 
Sbjct: 55  LQNVSLQNVGLQNVGLQNMSLQNVSLQNMGLQNVGLQNISLQNIGLQNAGLQNISLQNVG 114

Query: 76  LQNDNVVLLHLQNVGATSLYFQNTG 101
           LQN  +  + LQNV   ++  QN G
Sbjct: 115 LQNAGLQNVSLQNVSLQNMGLQNVG 139

[Close]
BLAST of ClCG03G009210 vs. ExPASy TrEMBL
Match: A0A4Z2GP35 (Putative PPE family protein PPE16 OS=Liparis tanakae OX=230148 GN=ppe16_1 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-04
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 0 

Query: 13  SLYLQNVDTASRHLQNVGASSLHLQNIDATLLHLQNAGAASLHLQNAGSASRYLQNVSAS 72
           ++ LQNV   +  LQNVG  ++ LQNI      LQN    ++ LQNAG  +  LQNVS  
Sbjct: 72  NMSLQNVSLQNMGLQNVGLQNISLQNIGLQNAGLQNISLQNVGLQNAGLQNVSLQNVSLQ 131

Query: 73  SLHLQNDNVVLLHLQNVGATSLYFQNTG 101
           ++ LQN  +  + LQN+G  ++  QN G
Sbjct: 132 NMGLQNVGLQNVSLQNMGLQNISLQNVG 159

The following BLAST results are available for this feature:
BLAST of ClCG03G009210 vs. NCBI nr
Match NameE-valueIdentityDescription
GFU00076.12.2e-0541.46putative oxidoreductase GLYR1 homolog [Trichonephila clavipes][more]
TMS04833.14.9e-0535.16Protein YIPF3 [Larimichthys crocea][more]
TNN54915.14.1e-0440.00putative PPE family protein PPE16 [Liparis tanakae][more]
BLAST of ClCG03G009210 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG03G009210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A4Z2GP352.0e-0440.91Putative PPE family protein PPE16 OS=Liparis tanakae OX=230148 GN=ppe16_1 PE=4 S... [more]
BLAST of ClCG03G009210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G009210.1ClCG03G009210.1mRNA