ClCG03G008920 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G008920
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description60S ribosomal protein L30-like
LocationCG_Chr03: 11262877 .. 11265445 (-)
RNA-Seq ExpressionClCG03G008920
SyntenyClCG03G008920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAAAATTATAAACCCTAACGCAATCCCCTCTCTCCAGTCCCGCCACCCCTTGTCGTTGAAAAGCACAGAAGGTATGGATTCAAACCCTAATTTTAGACATTTTTTGCCCATAACATCCGAAGATTTCGGTTGTTTTCATATCTGTTTCATCTTTGCTTTAGGGATTTTGTTCACCTTTTGAGCAGCGACGATGGCGCCGGCGAAGAAGACTGTAAGTATCACTCTAACGTCACTTCCAATTACTTTATGGATACTGTTTTTGATTATCTGTGGTGTTGTGATTGCAGAAGAAGACTCATGAGAGCATTAACAACAGGCTCGCCCTTGTGATGAAGAGTGGCAAGTACACACTGGGTTACAAAACCGTCCTTCGCACTATCCGCAGTTCCAAAGGTCTTCATCCGTGTCCTTATCTTTGCATGAAACCTTGTTGTTTATTAACAATGGCACTTGATTCAGTTTTAGGTTTTATTCTGTATTTTTTACACTTTTCTGTATTTCGATCTGTGAAAATACAGGGAAGCTTATTATTCTATCGAATAACTGCCCGCCTCTGCGTAAATCCGAAATTGAGTACTACGCAATGCTTGCCAAAATTGGAGTTCACCACTATAACGGAAGTAAGTTTCGTAGGGACTCTGCTTAGTTACTTGGTTGTTTATTTGTCTAAGTTGCAACCACGAATTTTCTGCTTTATAGCATTTTGGTGCTTCGTATGCTCGATTTAAGATATATGGGACTTCACTACTCTCTTTTCTTGTATTATATTATTACATCTTTCATTATTATAGAATAAGGAAAATAGGTCTTATATTTAAAGCAGTCAACTCCGTACTAGAGTAGCTTTTTGCATAATCTGGACAAGAATTTATTGTGTTTGTAACTTTAAATTTAAGTAACTTGATCAATTATGTAATGGCTGGGTATTCTGTTATGAAGAGTGCTCATAATGGGCTTTCCATGTTCAAATAAACTAATAATTCAGTGTGTAGTTCGTCCTTACTAGAATCTTTTAGAACTATTTGCAAAGTAGGCGCTTCTTGCTACCTAAGAAGCAAGACAAGGATATGATACACAACATAGATGCAGGGACATTCTTTGAAATAAATATCATTTTGGTAATACAAAGTCAATAAGTTGATGCATTTATATGCTAAAGAGTGTGTTCAATGTATTTTTCATTCAAAATTTATTATTTTTTGTACATTATTATGTGTTTGTTTAGTATACTACACAAGTGTTCAATATGTTTAACAATTGTTGGACCTATATTAATTTTGTTAAACTATCTAACACGTTTATTGTACTAACAAGTGTTTGATTTGTGTCCAACAAGTGTGTCCAAGTGTTGTACATGGAAGTTTTGGCCAAACTGAAATGTCTATGCTTCTTAGTTTCGTACTTTCCTTTTGATTTGCTACCATTGTTTTCAACAATTGTTTTGATATTGGTATGTAGCCTATTGAATAAAATAGATAGGTGGGTTGCTTTCATTGGTAGTAATTGGTTTTTCTTCTTACTCATAATAGTTTTGTTGGTCAACCAATTTTATTTTTTCTCATTCCATTTTACAACTTGAGTTTAAAAATTTGTCGGTTAATTAGACCTGTATGCTCGATTGTTCTGCTTTACTTCTATGTATTTTCATGTACGATTACCAGTATGTTTTGTTTATTCTGTCTTATATATTGTTTTTGTCATTTGGGCTTGTGTTTAGGTAACGTGGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTCTCCTGCCTCAGCATTATTGATCCAGGTACTACAAATTTTGTTATGTGGTTCATAAAATTTCATTTCTATGTCATTAGGTGGTCCTTGAGTTTTAGTCCCTGAAGTTTACATAAAATAAGTTAAACAAAAAATTGATAGAATGGCGTTTCTTTTTCCTTTACTTTATGGGTTAATTTCTTACTGAGGGTAGATATTTTCTGTGGACAAATGTTTGAGAGAACAAATGTAGTTGGATGTTGGGTATTGAAATACATTTAACTTTTTGGTTAAATGATGAAGCAGAAATATAATTTTTTCTAATCGAAGTATTGAAATTTAAATGCTACACTTTGAAAGTCTGCACCAGAATAATAAATCTATTACCAAAATAGAAATAGTGAAACATTGAGCTGCCTTATACTTGTCCTTTCATGATTGGTTTTACCAAGTCTTCTACCCTTGTATTCTTTTTCCAGGTGATTCTGATATTATCAAATCGCTTCCCGGTGATCAGTGATAATTGTGTCATTGAGGACGTTAGGCTTTTTTGTTTTTGCACCTTTTTCTCTTCAGCAAAGGCTAGAATTTGCATCTATTTTAATGTCTCCAGAATAGCTACCAACTTTATGCATTAAAATTGTACTGTTGATAACCAGATTTTGTCAATGTCTTTGAGGTTTTATTTAGTTGAGACGTGGTCTTATATAGAATGTTCAAGTTGTTTTATACCTATTTATGCTTAAACAATTGAGAATACGGAATCTCGTTGCCTTTTGTATTAGCAATGCAATTACGTTTTTTAATTACAAGATTGTTTTAGTTCAGCA

mRNA sequence

TATAAAATTATAAACCCTAACGCAATCCCCTCTCTCCAGTCCCGCCACCCCTTGTCGTTGAAAAGCACAGAAGGGATTTTGTTCACCTTTTGAGCAGCGACGATGGCGCCGGCGAAGAAGACTAAGAAGACTCATGAGAGCATTAACAACAGGCTCGCCCTTGTGATGAAGAGTGGCAAGTACACACTGGGTTACAAAACCGTCCTTCGCACTATCCGCAGTTCCAAAGGGAAGCTTATTATTCTATCGAATAACTGCCCGCCTCTGCGTAAATCCGAAATTGAGTACTACGCAATGCTTGCCAAAATTGGAGTTCACCACTATAACGGAAGTAACGTGGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTCTCCTGCCTCAGCATTATTGATCCAGGTGATTCTGATATTATCAAATCGCTTCCCGGTGATCAGTGATAATTGTGTCATTGAGGACGTTAGGCTTTTTTGTTTTTGCACCTTTTTCTCTTCAGCAAAGGCTAGAATTTGCATCTATTTTAATGTCTCCAGAATAGCTACCAACTTTATGCATTAAAATTGTACTGTTGATAACCAGATTTTGTCAATGTCTTTGAGGTTTTATTTAGTTGAGACGTGGTCTTATATAGAATGTTCAAGTTGTTTTATACCTATTTATGCTTAAACAATTGAGAATACGGAATCTCGTTGCCTTTTGTATTAGCAATGCAATTACGTTTTTTAATTACAAGATTGTTTTAGTTCAGCA

Coding sequence (CDS)

ATGGCGCCGGCGAAGAAGACTAAGAAGACTCATGAGAGCATTAACAACAGGCTCGCCCTTGTGATGAAGAGTGGCAAGTACACACTGGGTTACAAAACCGTCCTTCGCACTATCCGCAGTTCCAAAGGGAAGCTTATTATTCTATCGAATAACTGCCCGCCTCTGCGTAAATCCGAAATTGAGTACTACGCAATGCTTGCCAAAATTGGAGTTCACCACTATAACGGAAGTAACGTGGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTCTCCTGCCTCAGCATTATTGATCCAGGTGATTCTGATATTATCAAATCGCTTCCCGGTGATCAGTGA

Protein sequence

MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEIEYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Homology
[Close]
BLAST of ClCG03G008920 vs. NCBI nr
Match: XP_008460497.1 (PREDICTED: 60S ribosomal protein L30-like [Cucumis melo] >XP_022939971.1 60S ribosomal protein L30-like [Cucurbita moschata] >XP_022992865.1 60S ribosomal protein L30-like [Cucurbita maxima] >XP_023549693.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >XP_023549694.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >XP_038906736.1 60S ribosomal protein L30-like [Benincasa hispida] >KAA0062391.1 60S ribosomal protein L30-like [Cucumis melo var. makuwa] >KAG6579016.1 60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016539.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma] >TYK26589.1 60S ribosomal protein L30-like [Cucumis melo var. makuwa])

HSP 1 Score: 228.8 bits (582), Expect = 2.3e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of ClCG03G008920 vs. NCBI nr
Match: XP_004140311.1 (60S ribosomal protein L30 [Cucumis sativus] >KGN51019.1 hypothetical protein Csa_008795 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 6.8e-56
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIR SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of ClCG03G008920 vs. NCBI nr
Match: XP_022141723.1 (60S ribosomal protein L30-like [Momordica charantia])

HSP 1 Score: 223.8 bits (569), Expect = 7.5e-55
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MA AKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of ClCG03G008920 vs. NCBI nr
Match: KAG6602049.1 (60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 34  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 93

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLP +Q
Sbjct: 94  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 145

[Close]
BLAST of ClCG03G008920 vs. NCBI nr
Match: XP_022952815.1 (60S ribosomal protein L30-like [Cucurbita moschata] >XP_023525455.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >KAG7032743.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLP +Q
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 112

[Close]
BLAST of ClCG03G008920 vs. ExPASy Swiss-Prot
Match: O49884 (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.0e-54
Identity = 100/112 (89.29%), Postives = 109/112 (97.32%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESINNRLALVMKSGKYTLGYKTVL+++RSSKGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKYYRV CLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGDQ 112

[Close]
BLAST of ClCG03G008920 vs. ExPASy Swiss-Prot
Match: Q9C8F7 (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.8e-51
Identity = 94/112 (83.93%), Postives = 108/112 (96.43%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYN +NVDLGTACGKY+RVSCLSI+DPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGDQ 112

[Close]
BLAST of ClCG03G008920 vs. ExPASy Swiss-Prot
Match: Q9M5M6 (60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.1e-51
Identity = 95/111 (85.59%), Postives = 106/111 (95.50%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESIN+RLALVMKSGK+TLGYKTVL ++RS+KGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGD 112
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RV CLSIID GDSDIIKS+PGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGD 111

[Close]
BLAST of ClCG03G008920 vs. ExPASy Swiss-Prot
Match: Q8VZ19 (60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 5.2e-51
Identity = 92/112 (82.14%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++R SKGKLI++S NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGDQ 112

[Close]
BLAST of ClCG03G008920 vs. ExPASy Swiss-Prot
Match: Q9LSA3 (60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 5.8e-50
Identity = 91/112 (81.25%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVH YNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGDQ 112

[Close]
BLAST of ClCG03G008920 vs. ExPASy TrEMBL
Match: A0A5D3DSZ7 (60S ribosomal protein L30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002180 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of ClCG03G008920 vs. ExPASy TrEMBL
Match: A0A6J1JWW8 (60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111489070 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of ClCG03G008920 vs. ExPASy TrEMBL
Match: A0A6J1FH91 (60S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111445673 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of ClCG03G008920 vs. ExPASy TrEMBL
Match: A0A1S3CCQ4 (60S ribosomal protein L30-like OS=Cucumis melo OX=3656 GN=LOC103499296 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of ClCG03G008920 vs. ExPASy TrEMBL
Match: A0A0A0KQ98 (Ribosomal_L7Ae domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G409620 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.3e-56
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIR SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of ClCG03G008920 vs. TAIR 10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-52
Identity = 94/112 (83.93%), Postives = 108/112 (96.43%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYN +NVDLGTACGKY+RVSCLSI+DPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGDQ 112

[Close]
BLAST of ClCG03G008920 vs. TAIR 10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 201.4 bits (511), Expect = 3.7e-52
Identity = 92/112 (82.14%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++R SKGKLI++S NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGDQ 112

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BLAST of ClCG03G008920 vs. TAIR 10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 198.0 bits (502), Expect = 4.1e-51
Identity = 91/112 (81.25%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVH YNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGDQ 112

The following BLAST results are available for this feature:
BLAST of ClCG03G008920 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460497.12.3e-56100.00PREDICTED: 60S ribosomal protein L30-like [Cucumis melo] >XP_022939971.1 60S rib... [more]
XP_004140311.16.8e-5699.1160S ribosomal protein L30 [Cucumis sativus] >KGN51019.1 hypothetical protein Csa... [more]
XP_022141723.17.5e-5597.3260S ribosomal protein L30-like [Momordica charantia][more]
KAG6602049.11.3e-5496.4360S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022952815.11.3e-5496.4360S ribosomal protein L30-like [Cucurbita moschata] >XP_023525455.1 60S ribosoma... [more]
BLAST of ClCG03G008920 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O498841.0e-5489.2960S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1[more]
Q9C8F71.8e-5183.93Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A P... [more]
Q9M5M63.1e-5185.5960S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1[more]
Q8VZ195.2e-5182.1460S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1[more]
Q9LSA35.8e-5081.2560S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1[more]
BLAST of ClCG03G008920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DSZ71.1e-56100.0060S ribosomal protein L30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A6J1JWW81.1e-56100.0060S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111489070 PE=3 ... [more]
A0A6J1FH911.1e-56100.0060S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111445673 PE=... [more]
A0A1S3CCQ41.1e-56100.0060S ribosomal protein L30-like OS=Cucumis melo OX=3656 GN=LOC103499296 PE=3 SV=1[more]
A0A0A0KQ983.3e-5699.11Ribosomal_L7Ae domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G409... [more]
BLAST of ClCG03G008920 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G36240.11.3e-5283.93Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT1G77940.13.7e-5282.14Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT3G18740.14.1e-5181.25Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 3..107
e-value: 6.1E-53
score: 179.0
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 13..106
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 13..105
e-value: 3.5E-23
score: 81.1
IPR039109Ribosomal protein L30/YlxQPANTHERPTHR11449RIBOSOMAL PROTEIN L30coord: 1..112
NoneNo IPR availablePANTHERPTHR11449:SF2660S RIBOSOMAL PROTEIN L30-LIKEcoord: 1..112
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00709RIBOSOMAL_L30E_1coord: 24..48
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00993RIBOSOMAL_L30E_2coord: 80..100
IPR000231Ribosomal protein L30eHAMAPMF_00481Ribosomal_L30ecoord: 12..109
score: 21.272532

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G008920.1ClCG03G008920.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome