ClCG03G008800 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G008800
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionZinc finger BED domain-containing protein DAYSLEEPER-like
LocationCG_Chr03: 10868370 .. 10869928 (-)
RNA-Seq ExpressionClCG03G008800
SyntenyClCG03G008800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTTTATAGTTCAAATTCAAGTACAGTAGAAGAATCTTCACGTCCTACTTCTACAGCTATAGTTAGTTCTTCAACTACAAGGCGAGATGGATCGGAAGTAGTAGTTTAACTTCTCTTGTTCATAGGAAAGATCGATATCTCAAGTTTGAAGAGTTTGTTAACAATGTGGAAAATGTTGACAATGTCAAATCAGAGCTAGATCATTATTTACTGAGACTCTTCTACCGCGTTCGAATGACTTTAACATTTTGCAATGGTAGAAGTTGAATAGAGTACAGTATCCTACTTTGTATCAAATTGCTAAAGATATTCTTGCTATTCTTGTCACTACTTTATGAATCTGCATTTAGAATTGGTTGTAGACATGTAGGTCCTCATCGTTCTCAAATCCATGCAAACTTATTGGAAGCTTTGATGTGTACTCAAGATTGGCCATGGGCTGAAGGTATGAATTAATATTATCACTTAATTTATTTGAAATTTTTTTTTTATTACCATTTAATGAACTCTTACTGATGCACATTTACCTAATTATATTTGTACGTGTCTTAATAGATAAGCATACTACCATAGATGCTAGAGTTTTGAAAAATGTTCTTGAAGATCGAGATCCAGATGATGTGAGTTATTAGTTTGTGTATTCTTATTGTTTTTTTTTTTTTTTTAATATTGACTTCTAATAATTTGTACAATGTTTATTTCTTTTTTTTTTTTTTTTTCCAGAATCATCTCTTACAAAGTTGGATGAAATTCATTGATGGTTTAACTTGGCTATATTGTAAGTTGTGACTTGTCTTAAAATAAACTATGTTGTTGTAACTTAGACTTGTGATTTATGAACCTTTGTTATAATTGAAGACTTTGTTAGGATTATTATGGATGTTATAATTATGTAAGTTTAGGATTTTATTTGCTTTAATTGCTTAAATGTTGTAATATCTAAAGATAGTATATTCTAATCTTTGAATTCTAATTTTTATAAATCATGAGAATTTAGCATTTTAATTATATCTTTTTTAAATAACATATGTATTATTGTTTTTATTAGTAAAATTGATCGTTTTTTATTTAAATGAAAATTGTAAAGGAAGTGCTTAAATTAAATAATTGTTAAAAAAAAAAAAAAAACTTAATTGAACTAAAAAAAATTGTTAAATTTCTCCAAAAAAAAATGTTAAAAAAATTAAGGCGGAGAAATTTTCCCCGTGGGGAATGATTCCGCGAGGATGGGGAATGGAATGGGGGGCAGGGACGGGGATGGGGACGGGGAAGGCTTTCCCATCCCCGCCCCATCCCATGGACATCTCTACTCGGGGGTCGATTGTTGATCGCCTTAAACATGTAGGTGTTGAGAATTTCTCTGACAAAAATGTGTCTTGCGAGATGAAAGCTAAAAAAGGAAGTGTCCATAGTGCAACCATAAAGAGGAGGGGGTCGATATCCCCCGTGTCAATTTGGCATCGCATTAGGCACGAAGATGCCGAAAATCATTCAAGTGAGAAGCCACCTCATGAGACAAAGGGGGAAGGAGAGATTCACAATGTCGTCCCTTAA

mRNA sequence

ATGAAGTTTTATAGTTCAAATTCAAGTACAGTAGAAGAATCTTCACGTCCTACTTCTACAGCTATAGTTAGTTCTTCAACTACAAGGCGAGATGGATCGGAATTTGAAGAGTTTGTTAACAATGTGGAAAATGTTGACAATGTCAAATCAGAGCTAGATCATTATTTACTGAGACTCTTCTACCGCGTTCGAATGACTTTAACATTTTGCAATGGTCCTCATCGTTCTCAAATCCATGCAAACTTATTGGAAGCTTTGATGTGTACTCAAGATTGGCCATGGGCTGAAGATAAGCATACTACCATAGATGCTAGAGTTTTGAAAAATGTTCTTGAAGATCGAGATCCAGATGATGCGGAGAAATTTTCCCCGTGGGGAATGATTCCGCGAGGATGGGGAATGGAATGGGGGGCAGGGACGGGGATGGGGACGGGGAAGGCTTTCCCATCCCCGCCCCATCCCATGGACATCTCTACTCGGGGGTCGATTGTTGATCGCCTTAAACATGTAGGTGTTGAGAATTTCTCTGACAAAAATGTGTCTTGCGAGATGAAAGCTAAAAAAGGAAGTGTCCATAGTGCAACCATAAAGAGGAGGGGGTCGATATCCCCCGTGTCAATTTGGCATCGCATTAGGCACGAAGATGCCGAAAATCATTCAAGTGAGAAGCCACCTCATGAGACAAAGGGGGAAGGAGAGATTCACAATGTCGTCCCTTAA

Coding sequence (CDS)

ATGAAGTTTTATAGTTCAAATTCAAGTACAGTAGAAGAATCTTCACGTCCTACTTCTACAGCTATAGTTAGTTCTTCAACTACAAGGCGAGATGGATCGGAATTTGAAGAGTTTGTTAACAATGTGGAAAATGTTGACAATGTCAAATCAGAGCTAGATCATTATTTACTGAGACTCTTCTACCGCGTTCGAATGACTTTAACATTTTGCAATGGTCCTCATCGTTCTCAAATCCATGCAAACTTATTGGAAGCTTTGATGTGTACTCAAGATTGGCCATGGGCTGAAGATAAGCATACTACCATAGATGCTAGAGTTTTGAAAAATGTTCTTGAAGATCGAGATCCAGATGATGCGGAGAAATTTTCCCCGTGGGGAATGATTCCGCGAGGATGGGGAATGGAATGGGGGGCAGGGACGGGGATGGGGACGGGGAAGGCTTTCCCATCCCCGCCCCATCCCATGGACATCTCTACTCGGGGGTCGATTGTTGATCGCCTTAAACATGTAGGTGTTGAGAATTTCTCTGACAAAAATGTGTCTTGCGAGATGAAAGCTAAAAAAGGAAGTGTCCATAGTGCAACCATAAAGAGGAGGGGGTCGATATCCCCCGTGTCAATTTGGCATCGCATTAGGCACGAAGATGCCGAAAATCATTCAAGTGAGAAGCCACCTCATGAGACAAAGGGGGAAGGAGAGATTCACAATGTCGTCCCTTAA

Protein sequence

MKFYSSNSSTVEESSRPTSTAIVSSSTTRRDGSEFEEFVNNVENVDNVKSELDHYLLRLFYRVRMTLTFCNGPHRSQIHANLLEALMCTQDWPWAEDKHTTIDARVLKNVLEDRDPDDAEKFSPWGMIPRGWGMEWGAGTGMGTGKAFPSPPHPMDISTRGSIVDRLKHVGVENFSDKNVSCEMKAKKGSVHSATIKRRGSISPVSIWHRIRHEDAENHSSEKPPHETKGEGEIHNVVP
Homology
BLAST of ClCG03G008800 vs. NCBI nr
Match: TYJ98100.1 (zinc finger BED domain-containing protein DAYSLEEPER-like [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 3.6e-22
Identity = 80/175 (45.71%), Postives = 94/175 (53.71%), Query Frame = 0

Query: 1   MKFYSSNSSTVEESSRPTSTAIVSSSTTRRDGS--------------EFEEFVNNVEN-V 60
           M FYSS SST EE  R TST+ +   T++RDGS              +FEEFV+NVEN V
Sbjct: 1   MTFYSSKSSTKEEPQRSTSTSYL---TSKRDGSSSKISLPNRKDRHLKFEEFVSNVENDV 60

Query: 61  DNVKSELDHYL-----------------------LRLFYRVRMTL------TFCN----- 120
           +NVKS+LD YL                         + Y +   +      T  +     
Sbjct: 61  NNVKSKLDRYLDESLLPRTKDFNILQWWKLNGVKYNVLYEIAKDVLAVPITTVASESAFS 120

BLAST of ClCG03G008800 vs. NCBI nr
Match: KAA0043375.1 (zinc finger BED domain-containing protein DAYSLEEPER-like [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-21
Identity = 79/173 (45.66%), Postives = 92/173 (53.18%), Query Frame = 0

Query: 1   MKFYSSNSSTVEESSRPTSTAIVSSSTTRRDGS--------------EFEEFVNNVEN-V 60
           M FYSS SST EE  R TST+ +   T +RDGS              +FEEFV+NVEN V
Sbjct: 1   MTFYSSKSSTKEEPQRSTSTSYL---TLKRDGSSSKISLPNKKDRHLKFEEFVSNVENDV 60

Query: 61  DNVKSELDHYL-----------------------LRLFYRVRMTL------TFCN----- 119
           +NVKS+LD YL                         + Y +   +      T  +     
Sbjct: 61  NNVKSKLDRYLDESLLPRTKDFNILQWWKLNGVKYNVLYEIAKDVLAVPITTVASESAFS 120

BLAST of ClCG03G008800 vs. NCBI nr
Match: XP_038892387.1 (uncharacterized protein LOC120081507 [Benincasa hispida] >XP_038892394.1 uncharacterized protein LOC120081507 [Benincasa hispida])

HSP 1 Score: 90.1 bits (222), Expect = 2.8e-14
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0

Query: 72  GPHRSQIHANLLEALMCTQDWPWAEDKHTTIDARVLKNVLEDRDPDD 119
           GPHR QIH NLLEALMCTQDW W EDK+T IDA+VL+NVLEDRDPDD
Sbjct: 54  GPHRFQIHENLLEALMCTQDWLWMEDKYTPIDAKVLENVLEDRDPDD 100

BLAST of ClCG03G008800 vs. NCBI nr
Match: XP_038902461.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Benincasa hispida])

HSP 1 Score: 56.6 bits (135), Expect = 3.4e-04
Identity = 40/70 (57.14%), Postives = 47/70 (67.14%), Query Frame = 0

Query: 2   KFYSSNSSTVEESSRPTSTAIVSSSTTRRDGS--------------EFEEFVNNVEN-VD 57
           +FY SNS T+EE  R TST I +SST+RR+GS              +FEE VNNVEN VD
Sbjct: 180 EFYISNSRTIEELQRSTST-ISTSSTSRRNGSNSSTDLVNRKDRYLKFEELVNNVENDVD 239

BLAST of ClCG03G008800 vs. NCBI nr
Match: KAF1881813.1 (hypothetical protein Lal_00042522 [Lupinus albus])

HSP 1 Score: 55.1 bits (131), Expect = 9.8e-04
Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = 0

Query: 73  PHRSQIHANLLEALMCTQDWPWAEDKHTTIDAR----VLKNVLEDRDPDDAEKFSPWGMI 129
           PH S++H++ LEALMC QDW W++ + ++        +   +LED D DD  KF  WG++
Sbjct: 109 PHHSRLHSHTLEALMCLQDWLWSDVRGSSKSIENINFITNTILEDIDDDDVMKF--WGLL 166

BLAST of ClCG03G008800 vs. ExPASy TrEMBL
Match: A0A5D3BE31 (Zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold222G00110 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-22
Identity = 80/175 (45.71%), Postives = 94/175 (53.71%), Query Frame = 0

Query: 1   MKFYSSNSSTVEESSRPTSTAIVSSSTTRRDGS--------------EFEEFVNNVEN-V 60
           M FYSS SST EE  R TST+ +   T++RDGS              +FEEFV+NVEN V
Sbjct: 1   MTFYSSKSSTKEEPQRSTSTSYL---TSKRDGSSSKISLPNRKDRHLKFEEFVSNVENDV 60

Query: 61  DNVKSELDHYL-----------------------LRLFYRVRMTL------TFCN----- 120
           +NVKS+LD YL                         + Y +   +      T  +     
Sbjct: 61  NNVKSKLDRYLDESLLPRTKDFNILQWWKLNGVKYNVLYEIAKDVLAVPITTVASESAFS 120

BLAST of ClCG03G008800 vs. ExPASy TrEMBL
Match: A0A5A7TPN2 (Zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G00380 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.6e-22
Identity = 79/173 (45.66%), Postives = 92/173 (53.18%), Query Frame = 0

Query: 1   MKFYSSNSSTVEESSRPTSTAIVSSSTTRRDGS--------------EFEEFVNNVEN-V 60
           M FYSS SST EE  R TST+ +   T +RDGS              +FEEFV+NVEN V
Sbjct: 1   MTFYSSKSSTKEEPQRSTSTSYL---TLKRDGSSSKISLPNKKDRHLKFEEFVSNVENDV 60

Query: 61  DNVKSELDHYL-----------------------LRLFYRVRMTL------TFCN----- 119
           +NVKS+LD YL                         + Y +   +      T  +     
Sbjct: 61  NNVKSKLDRYLDESLLPRTKDFNILQWWKLNGVKYNVLYEIAKDVLAVPITTVASESAFS 120

BLAST of ClCG03G008800 vs. ExPASy TrEMBL
Match: A0A6A5NEK9 (Dimer_Tnp_hAT domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00042522 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-04
Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = 0

Query: 73  PHRSQIHANLLEALMCTQDWPWAEDKHTTIDAR----VLKNVLEDRDPDDAEKFSPWGMI 129
           PH S++H++ LEALMC QDW W++ + ++        +   +LED D DD  KF  WG++
Sbjct: 109 PHHSRLHSHTLEALMCLQDWLWSDVRGSSKSIENINFITNTILEDIDDDDVMKF--WGLL 166

BLAST of ClCG03G008800 vs. ExPASy TrEMBL
Match: A0A2N9G3A3 (TIR domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21835 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.1e-04
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 0

Query: 73  PHRSQIHANLLEALMCTQDWPWAEDKHTTI--DARVLKNVLEDRDPDDAEK 122
           PHRS++H   LEALMC Q W W+E K +++  D   ++N+LED D  + E+
Sbjct: 547 PHRSRLHPRTLEALMCAQSWLWSELKDSSLMPDDATIQNILEDYDDHEEEE 597

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYJ98100.13.6e-2245.71zinc finger BED domain-containing protein DAYSLEEPER-like [Cucumis melo var. mak... [more]
KAA0043375.11.8e-2145.66zinc finger BED domain-containing protein DAYSLEEPER-like [Cucumis melo var. mak... [more]
XP_038892387.12.8e-1482.98uncharacterized protein LOC120081507 [Benincasa hispida] >XP_038892394.1 unchara... [more]
XP_038902461.13.4e-0457.14zinc finger BED domain-containing protein RICESLEEPER 3-like [Benincasa hispida][more]
KAF1881813.19.8e-0440.00hypothetical protein Lal_00042522 [Lupinus albus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BE311.7e-2245.71Zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucumis melo var. m... [more]
A0A5A7TPN28.6e-2245.66Zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucumis melo var. m... [more]
A0A6A5NEK94.8e-0440.00Dimer_Tnp_hAT domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00042522... [more]
A0A2N9G3A38.1e-0445.10TIR domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21835 PE=4... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 214..239
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 214..233

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G008800.1ClCG03G008800.1mRNA