ClCG03G008565 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G008565
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Heat shock protein DnaJ with tetratricopeptide repeat
Location	CG_Chr03: 10171968 .. 10172273 (-)
RNA-Seq Expression	ClCG03G008565
Synteny	ClCG03G008565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAAAAGCACCAACATGTCCACGCGACGACTTCTCTTCCAATCCTTTTGACCACCACCGTCGAATGTGACACCATCGTCGCCCTTCCTCAGCCACGTAAAGCTCCTCCTTCATCATTGCACCACGACCTCTTTGATTGCCTTCACGACCTCGAACATTTGAAGCTCTTCTACAAGTCAATATTGAAATGTCGAAAGCTTCCTGGTCCAACATGGAAGCACCATAATGTGCAGTATAGTGAAATCCCAAGTAACTATCAAGGTACTTGTCTTTTCTCCCTCACAAAATCAGAGCAAAATTAG

mRNA sequence

ATGCCAAAAAAGCACCAACATGTCCACGCGACGACTTCTCTTCCAATCCTTTTGACCACCACCGTCGAATGTGACACCATCGTCGCCCTTCCTCAGCCACGTAAAGCTCCTCCTTCATCATTGCACCACGACCTCTTTGATTGCCTTCACGACCTCGAACATTTGAAGCTCTTCTACAAGTCAATATTGAAATGTCGAAAGCTTCCTGGTCCAACATGGAAGCACCATAATGTGCAGTATAGTGAAATCCCAAGTAACTATCAAGGTACTTGTCTTTTCTCCCTCACAAAATCAGAGCAAAATTAG

Coding sequence (CDS)

ATGCCAAAAAAGCACCAACATGTCCACGCGACGACTTCTCTTCCAATCCTTTTGACCACCACCGTCGAATGTGACACCATCGTCGCCCTTCCTCAGCCACGTAAAGCTCCTCCTTCATCATTGCACCACGACCTCTTTGATTGCCTTCACGACCTCGAACATTTGAAGCTCTTCTACAAGTCAATATTGAAATGTCGAAAGCTTCCTGGTCCAACATGGAAGCACCATAATGTGCAGTATAGTGAAATCCCAAGTAACTATCAAGGTACTTGTCTTTTCTCCCTCACAAAATCAGAGCAAAATTAG

Protein sequence

MPKKHQHVHATTSLPILLTTTVECDTIVALPQPRKAPPSSLHHDLFDCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIPSNYQGTCLFSLTKSEQN

Homology

[Close]

BLAST of ClCG03G008565 vs. NCBI nr
Match: XP_039027284.1 (uncharacterized protein LOC120161050 [Hibiscus syriacus] >KAE8679593.1 putative DNA replication regulator dpb11 [Hibiscus syriacus])

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-10
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 43  HDLFDCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           H L DCLHDLEHLKL Y SIL+ RKLPGPTWK HNV+Y EIP
Sbjct: 333 HCLPDCLHDLEHLKLLYNSILRDRKLPGPTWKRHNVRYREIP 374

[Close]

BLAST of ClCG03G008565 vs. NCBI nr
Match: KAA0044409.1 (Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 [Cucumis melo var. makuwa] >TYK29536.1 Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-10
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 43  HDLFDCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           H L DCLHDLEHLKL Y SIL+ RKLPGP WK HNV+Y EIP
Sbjct: 323 HCLVDCLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIP 364

[Close]

BLAST of ClCG03G008565 vs. NCBI nr
Match: XP_008454300.1 (PREDICTED: uncharacterized protein LOC103494740 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-10
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 43  HDLFDCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           H L DCLHDLEHLKL Y SIL+ RKLPGP WK HNV+Y EIP
Sbjct: 333 HCLVDCLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIP 374

[Close]

BLAST of ClCG03G008565 vs. NCBI nr
Match: XP_038995852.1 (uncharacterized protein LOC120120243 isoform X1 [Hibiscus syriacus] >KAE8708698.1 hypothetical protein F3Y22_tig00110333pilonHSYRG00090 [Hibiscus syriacus])

HSP 1 Score: 73.9 bits (180), Expect = 8.6e-10
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 47  DCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           DCLHD EHLKL Y SIL+ RKLPGP WKHHNV+Y EIP
Sbjct: 334 DCLHDFEHLKLLYNSILRDRKLPGPVWKHHNVRYKEIP 371

[Close]

BLAST of ClCG03G008565 vs. NCBI nr
Match: XP_038995854.1 (uncharacterized protein LOC120120243 isoform X2 [Hibiscus syriacus])

HSP 1 Score: 73.9 bits (180), Expect = 8.6e-10
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 47  DCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           DCLHD EHLKL Y SIL+ RKLPGP WKHHNV+Y EIP
Sbjct: 334 DCLHDFEHLKLLYNSILRDRKLPGPVWKHHNVRYKEIP 371

[Close]

BLAST of ClCG03G008565 vs. ExPASy TrEMBL
Match: A0A6A2XV72 (Putative DNA replication regulator dpb11 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111398pilonHSYRG00180 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 43  HDLFDCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           H L DCLHDLEHLKL Y SIL+ RKLPGPTWK HNV+Y EIP
Sbjct: 333 HCLPDCLHDLEHLKLLYNSILRDRKLPGPTWKRHNVRYREIP 374

[Close]

BLAST of ClCG03G008565 vs. ExPASy TrEMBL
Match: A0A5D3E0U9 (Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001390 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-10
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 43  HDLFDCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           H L DCLHDLEHLKL Y SIL+ RKLPGP WK HNV+Y EIP
Sbjct: 323 HCLVDCLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIP 364

[Close]

BLAST of ClCG03G008565 vs. ExPASy TrEMBL
Match: A0A1S3BXS6 (uncharacterized protein LOC103494740 OS=Cucumis melo OX=3656 GN=LOC103494740 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-10
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 43  HDLFDCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           H L DCLHDLEHLKL Y SIL+ RKLPGP WK HNV+Y EIP
Sbjct: 333 HCLVDCLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIP 374

[Close]

BLAST of ClCG03G008565 vs. ExPASy TrEMBL
Match: A0A6A3AYE3 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110333pilonHSYRG00090 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-10
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 47  DCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           DCLHD EHLKL Y SIL+ RKLPGP WKHHNV+Y EIP
Sbjct: 334 DCLHDFEHLKLLYNSILRDRKLPGPVWKHHNVRYKEIP 371

[Close]

BLAST of ClCG03G008565 vs. ExPASy TrEMBL
Match: A0A540K6Y7 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_044479 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-10
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 47  DCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIPSNYQGTCLFSLTKSEQ 101
           DCLHDLEHLKL Y SIL+ RKLPGP WK HNV+Y EIP      CL + TK++Q
Sbjct: 347 DCLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIPGK---LCLLT-TKTQQ 396

[Close]

BLAST of ClCG03G008565 vs. TAIR 10
Match: AT4G02100.1 (Heat shock protein DnaJ with tetratricopeptide repeat )

HSP 1 Score: 68.2 bits (165), Expect = 4.4e-12
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 47  DCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           D LHDLEHLKL Y SIL+ RKLPGP WK HNV+Y EIP
Sbjct: 329 DSLHDLEHLKLLYNSILRDRKLPGPVWKRHNVRYREIP 366

[Close]

BLAST of ClCG03G008565 vs. TAIR 10
Match: AT2G47440.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 9.8e-12
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 47  DCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           D LHDLEHLKL Y +IL+ RKLPGP WK HNV+Y EIP
Sbjct: 311 DSLHDLEHLKLLYNTILRDRKLPGPVWKRHNVKYREIP 348

[Close]

BLAST of ClCG03G008565 vs. TAIR 10
Match: AT3G62570.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-11
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 47  DCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           D LHDLEHLK+ Y +IL+ RKLPGP WK HNV+Y EIP
Sbjct: 332 DSLHDLEHLKILYNTILRDRKLPGPPWKRHNVKYREIP 369

[Close]

BLAST of ClCG03G008565 vs. TAIR 10
Match: AT1G02650.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 23  ECDTIVALPQPRKAPPSSLHHDLF-------DCLHDLEHLKLFYKSILKCRKLPGPTWKH 82
           +C+ I+AL +P          +LF       D LHDLEHLKL + SIL+ R L GP WK 
Sbjct: 276 DCNLILAL-EPSCIEALETRAELFRSIRCFPDSLHDLEHLKLLFNSILRDRSLTGPVWKR 335

Query: 83  HNVQYSEIP 85
           HNV+Y EIP
Sbjct: 336 HNVRYREIP 343

The following BLAST results are available for this feature:

BLAST of ClCG03G008565 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_039027284.1	2.3e-10	78.57	uncharacterized protein LOC120161050 [Hibiscus syriacus] >KAE8679593.1 putative ...	[more]
KAA0044409.1	3.9e-10	76.19	Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 [Cucumis melo va...	[more]
XP_008454300.1	3.9e-10	76.19	PREDICTED: uncharacterized protein LOC103494740 [Cucumis melo]	[more]
XP_038995852.1	8.6e-10	78.95	uncharacterized protein LOC120120243 isoform X1 [Hibiscus syriacus] >KAE8708698....	[more]
XP_038995854.1	8.6e-10	78.95	uncharacterized protein LOC120120243 isoform X2 [Hibiscus syriacus]	[more]

BLAST of ClCG03G008565 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G008565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A2XV72	1.1e-10	78.57	Putative DNA replication regulator dpb11 OS=Hibiscus syriacus OX=106335 GN=F3Y22...	[more]
A0A5D3E0U9	1.9e-10	76.19	Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 OS=Cucumis melo ...	[more]
A0A1S3BXS6	1.9e-10	76.19	uncharacterized protein LOC103494740 OS=Cucumis melo OX=3656 GN=LOC103494740 PE=...	[more]
A0A6A3AYE3	4.2e-10	78.95	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110333pilon...	[more]
A0A540K6Y7	4.2e-10	64.81	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_044479 PE=4 SV=1	[more]

BLAST of ClCG03G008565 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02100.1	4.4e-12	76.32	Heat shock protein DnaJ with tetratricopeptide repeat	[more]
AT2G47440.1	9.8e-12	73.68	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G62570.1	2.2e-11	71.05	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G02650.1	1.4e-10	47.83	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46816:SF1	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN	coord: 45..87
None	No IPR available	PANTHER	PTHR46816	FAMILY NOT NAMED	coord: 45..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G008565.1	ClCG03G008565.1	mRNA