ClCG03G007880 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G007880
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	transcription factor TCP10-like
Location	CG_Chr03: 8962440 .. 8962694 (+)
RNA-Seq Expression	ClCG03G007880
Synteny	ClCG03G007880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTCAAAGGCTTTCTCTTAATGATGGGGATAACAAGAACGCGAAGCTCGGCCGGAGAGACCGTCGCATCTGTTCAAGCGTCGGCGCCAGCAAGGTTTACACTTCAAAAGGCCTCCGAGCAAGGAGGCTCCGACCGGCATTGAATTCTACGACGTTGAGGATCACCTTGGCTACGACCAACCAATTGAAGCCATCGGTTGGCTTCTTCAGGATGCCAAATCCGCCATTGATGCCCTTTCTCGACCATTAG

mRNA sequence

ATGGGTTCTCAAAGGCTTTCTCTTAATGATGGGGATAACAAGAACGCGAAGCTCGGCCGGAGAGACCGTCGCATCTGTTCAAGCGTCGGCGCCAGCAAGGTTTACACTTCAAAAGGCCTCCGAGCAAGGAGGCTCCGACCGGCATTGAATTCTACGACGTTGAGGATCACCTTGGCTACGACCAACCAATTGAAGCCATCGGTTGGCTTCTTCAGGATGCCAAATCCGCCATTGATGCCCTTTCTCGACCATTAG

Coding sequence (CDS)

ATGGGTTCTCAAAGGCTTTCTCTTAATGATGGGGATAACAAGAACGCGAAGCTCGGCCGGAGAGACCGTCGCATCTGTTCAAGCGTCGGCGCCAGCAAGGTTTACACTTCAAAAGGCCTCCGAGCAAGGAGGCTCCGACCGGCATTGAATTCTACGACGTTGAGGATCACCTTGGCTACGACCAACCAATTGAAGCCATCGGTTGGCTTCTTCAGGATGCCAAATCCGCCATTGATGCCCTTTCTCGACCATTAG

Protein sequence

MGSQRLSLNDGDNKNAKLGRRDRRICSSVGASKVYTSKGLRARRLRPALNSTTLRITLATTNQLKPSVGFFRMPNPPLMPFLDH

Homology

[Close]

BLAST of ClCG03G007880 vs. NCBI nr
Match: XP_038893685.1 (transcription factor TCP10-like [Benincasa hispida])

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-07
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  MGSQRLSLNDGDNKNAKLGRRDRRICSSVGA--SKVYTSKGLRARRLR 47
          MGSQRLSLND D K AKLGRRDRR+ SS GA   KVYTS+GLRARR R
Sbjct: 1  MGSQRLSLNDEDEKTAKLGRRDRRLRSSAGAVPGKVYTSRGLRARRFR 48

[Close]

BLAST of ClCG03G007880 vs. NCBI nr
Match: XP_008443015.1 (PREDICTED: transcription factor TCP10-like [Cucumis melo] >KAA0057025.1 transcription factor TCP10-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 5.3e-05
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 7  SLNDGDNKNAKLGRRDRRICSS--VGASKVYTSKGLRARRLR 47
          SL+D D K AK+GRR+RR+CSS   GA KVYTSKGLRARRLR
Sbjct: 3  SLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLR 44

[Close]

BLAST of ClCG03G007880 vs. ExPASy TrEMBL
Match: A0A5A7UTZ9 (Transcription factor TCP10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002100 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.6e-05
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 7  SLNDGDNKNAKLGRRDRRICSS--VGASKVYTSKGLRARRLR 47
          SL+D D K AK+GRR+RR+CSS   GA KVYTSKGLRARRLR
Sbjct: 3  SLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLR 44

[Close]

BLAST of ClCG03G007880 vs. ExPASy TrEMBL
Match: A0A1S3B7T4 (transcription factor TCP10-like OS=Cucumis melo OX=3656 GN=LOC103486739 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.6e-05
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 7  SLNDGDNKNAKLGRRDRRICSS--VGASKVYTSKGLRARRLR 47
          SL+D D K AK+GRR+RR+CSS   GA KVYTSKGLRARRLR
Sbjct: 3  SLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLR 44

The following BLAST results are available for this feature:

BLAST of ClCG03G007880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893685.1	2.0e-07	77.08	transcription factor TCP10-like [Benincasa hispida]	[more]
XP_008443015.1	5.3e-05	73.81	PREDICTED: transcription factor TCP10-like [Cucumis melo] >KAA0057025.1 transcri...	[more]

BLAST of ClCG03G007880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G007880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UTZ9	2.6e-05	73.81	Transcription factor TCP10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S3B7T4	2.6e-05	73.81	transcription factor TCP10-like OS=Cucumis melo OX=3656 GN=LOC103486739 PE=4 SV=...	[more]

BLAST of ClCG03G007880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G007880.2	ClCG03G007880.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity