ClCG03G007530 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G007530
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRho_N domain-containing protein
LocationCG_Chr03: 8535337 .. 8537211 (+)
RNA-Seq ExpressionClCG03G007530
SyntenyClCG03G007530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGGGTGTAGCTCTCTGTATAAGCATAGGCTGAATTCGAAAATGAAAATTTTGAATTGGGTTTGACAAAGACCAGAGATTGCCGGAATTTCAAGCTCACTGAGCCACGATGATCGTGCCCAGCCGGAGATAGCCAGAAGGTTGTTGGGGGTTTTGCTACCAGTAACATCATGGCTTTCGCCGAGGAGCTTCAGTAAGAAACAGCAAAAACGGTAACGAAATTCTGCTATTATAGTAAGAGAGAAAGTAATAATAGAGACAAATGAAAAGAAAGAATGAATGGTGAGATGTCCACGTGGGAGCATGAGCTTCAGAAGCCGTGTGGCCCAGCGGTAAATGGCAATAAAGAAGAACCGACCTATATAATATACGTACAGCTTGTGGATCTGATGCAATTTGGATATTCAAAGAATTGCATTTTTCTGGAAAAAATCAGATGGAAGCAATAGTTTTCCAGCCTCGGATTCTAAACCGCTTTCCCAATTTGGTCTCTTTGGGAAGGAGACCCACGTTCGCTTCGAAAGGTATCGAGCTTGAAACTCCCAAGAACCAGTCTTGAATTTCGCAAATCTGTTGTTTGTCCATATCATTCAGCTTTGTCTGCTGTATTTGAAGTGAACAATCTATTTTTGTTGTCATCACTTTTTATTGCAGAATTTGTAGATCTTGTGTACTTCACTAGCTGAGGGATTAATTTTTGATGCAGCTTGTTAAATTTGGCAGACATTGCAGATGTTTATCCCATTAAGAGCATTAAATTATCTGTTACGAACAATAGGCCAGATGGAAATGGAGGGAATCGGCCTCCTCGTAGAAACTCTGCGCCAGGAAAAACGAGGAAGAATGAAGTTTCTTCGAGGAAAACAGAAGCCCATAAGAATGAGGAAGACCTAAAAGAATCAAAATACAATAACCAGGAAGAAATAATTGCTCTCTTCAGAAAGATTCAGACTTCCATTGCTAAGGAATCCGCAAGCTCCAATGATGAAGAATCCTGCAAGGATGAACATGGAGCCGAGTCTATTTTAGAGACTCTTCGTGAATCAAGGAAGCAGGTGAAAGGTAATTTCTTGATTGTCTCGTCTGACGCTTTTGTGGGAAATTTGGTCCACTTTTAAATCCATGAATGCATCTCGCAAGAACTAAAATTTATAATTTATAAACATCTCAATTAATTGGCAATGTGATTCAATTCCCGAACCAACATACACATCAAACAAATACATTTAGCAGCATTGTTATGACCTTGTGAAATAATAGTATGGCGACACTTCCAAGTGAATATACATCGTCACAAGCTATGATAAAAAGTTTCTATCTCGTATCTTTACTAAATAATAGAGCTATGGACAGGCAAAACTTCAAAGAAGGTAGGAGCTAAAGCGTTGAGAAGTAAAGGCACGTCTGAAGGGAAGGAAATGCATGATACTTCGCCACCAGTTGCAGATTTCAAGTTGGTTCGACCACCCTCTAAATTTGTGAAGAGATCGCCAATCCCATCTCCCCAACGAGGACGTGGTTCGCATCTTAGAGTTGATGCATCTCAGGCCATAGCTGAAAGCAGGGAGTTGAAGGTCCCAAGTATAGAGAATATGAAACTTACCGAGCTGAAAGCACTAGCAAAATCTAGAGGAATTAAGGGTTACTCCAAATTGAAGAAAAATGAGCTAATTGAACTCCTGGGATCCTAAATCATATCAGGGCATTTTGAGGAGAAATCATTGGTCTCTTCTGTTTTTTTTTTTTTTTTTTACCTTTCCTTTGGCGTTCCTCATTCTACTTCCTTCACATGTTTTGATAACAAAATTGCAAGTTGATCTTCCAGTGGATCGTAACATTCAAAAGACCTTTGTTCATACATTACATCTATAA

mRNA sequence

ATGCTGGGACCAGAGATTGCCGGAATTTCAAGCTCACTGAGCCACGATGATCGTGCCCAGCCGGAGATAGCCAGAAGGTTGTTGGGGGTTTTGCTACCAGTAACATCATGGCTTTCGCCGAGGAGCTTCAGAGACCCACGTTCGCTTCGAAAGGTATCGAGCTTGAAACTCCCAAGAACCAGTCTTGAATTTCGCAAATCTGTTGTTTGTCCATATCATTCAGCTTTGTCTGCTGTATTTGAAGTGAACAATCTATTTTTGTTGTCATCACTTTTTATTGCAGAATTTGTAGATCTTGTGCCAGATGGAAATGGAGGGAATCGGCCTCCTCGTAGAAACTCTGCGCCAGGAAAAACGAGGAAGAATGAAGTTTCTTCGAGGAAAACAGAAGCCCATAAGAATGAGGAAGACCTAAAAGAATCAAAATACAATAACCAGGAAGAAATAATTGCTCTCTTCAGAAAGATTCAGACTTCCATTGCTAAGGAATCCGCAAGCTCCAATGATGAAGAATCCTGCAAGGATGAACATGGAGCCGAGTCTATTTTAGAGACTCTTCGTGAATCAAGGAAGCAGGTGAAAGGCAAAACTTCAAAGAAGGTAGGAGCTAAAGCGTTGAGAAGTAAAGGCACGTCTGAAGGGAAGGAAATGCATGATACTTCGCCACCAGTTGCAGATTTCAAGTTGGTTCGACCACCCTCTAAATTTGTGAAGAGATCGCCAATCCCATCTCCCCAACGAGGACGTGGTTCGCATCTTAGAGTTGATGCATCTCAGGCCATAGCTGAAAGCAGGGAGTTGAAGGTCCCAAGTATAGAGAATATGAAACTTACCGAGCTGAAAGCACTAGCAAAATCTAGAGGAATTAAGGTGGATCGTAACATTCAAAAGACCTTTGTTCATACATTACATCTATAA

Coding sequence (CDS)

ATGCTGGGACCAGAGATTGCCGGAATTTCAAGCTCACTGAGCCACGATGATCGTGCCCAGCCGGAGATAGCCAGAAGGTTGTTGGGGGTTTTGCTACCAGTAACATCATGGCTTTCGCCGAGGAGCTTCAGAGACCCACGTTCGCTTCGAAAGGTATCGAGCTTGAAACTCCCAAGAACCAGTCTTGAATTTCGCAAATCTGTTGTTTGTCCATATCATTCAGCTTTGTCTGCTGTATTTGAAGTGAACAATCTATTTTTGTTGTCATCACTTTTTATTGCAGAATTTGTAGATCTTGTGCCAGATGGAAATGGAGGGAATCGGCCTCCTCGTAGAAACTCTGCGCCAGGAAAAACGAGGAAGAATGAAGTTTCTTCGAGGAAAACAGAAGCCCATAAGAATGAGGAAGACCTAAAAGAATCAAAATACAATAACCAGGAAGAAATAATTGCTCTCTTCAGAAAGATTCAGACTTCCATTGCTAAGGAATCCGCAAGCTCCAATGATGAAGAATCCTGCAAGGATGAACATGGAGCCGAGTCTATTTTAGAGACTCTTCGTGAATCAAGGAAGCAGGTGAAAGGCAAAACTTCAAAGAAGGTAGGAGCTAAAGCGTTGAGAAGTAAAGGCACGTCTGAAGGGAAGGAAATGCATGATACTTCGCCACCAGTTGCAGATTTCAAGTTGGTTCGACCACCCTCTAAATTTGTGAAGAGATCGCCAATCCCATCTCCCCAACGAGGACGTGGTTCGCATCTTAGAGTTGATGCATCTCAGGCCATAGCTGAAAGCAGGGAGTTGAAGGTCCCAAGTATAGAGAATATGAAACTTACCGAGCTGAAAGCACTAGCAAAATCTAGAGGAATTAAGGTGGATCGTAACATTCAAAAGACCTTTGTTCATACATTACATCTATAA

Protein sequence

MLGPEIAGISSSLSHDDRAQPEIARRLLGVLLPVTSWLSPRSFRDPRSLRKVSSLKLPRTSLEFRKSVVCPYHSALSAVFEVNNLFLLSSLFIAEFVDLVPDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAKESASSNDEESCKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEMHDTSPPVADFKLVRPPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKVDRNIQKTFVHTLHL
Homology
BLAST of ClCG03G007530 vs. NCBI nr
Match: XP_038893911.1 (SAP-like protein BP-73 isoform X2 [Benincasa hispida])

HSP 1 Score: 314.3 bits (804), Expect = 1.1e-81
Identity = 174/224 (77.68%), Postives = 193/224 (86.16%), Query Frame = 0

Query: 79  VFEVNNLFLLSSLFIAEFVDLV-----PDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHK 138
           +F + NL  ++ ++ ++ + L      PDG  GNRPPRR SAPGKTRKNE SSRKTEAH 
Sbjct: 43  LFNLLNLADIADVYPSKGIQLSVSNNRPDGKAGNRPPRRISAPGKTRKNEPSSRKTEAHM 102

Query: 139 NEEDLKESKYNNQEEIIALFRKIQTSIAKESASSNDEESCKDEHGAESILETLRESRKQV 198
           NEEDLK+SKYNNQEEIIALFRKI+TSIAKESASSNDEESCKDEHGAESILETLRESRKQV
Sbjct: 103 NEEDLKKSKYNNQEEIIALFRKIETSIAKESASSNDEESCKDEHGAESILETLRESRKQV 162

Query: 199 KGKTSKKVGAKALRSKGTSEGKEMHDTSPPVADFKLVRPPSKFVKRSPIPSPQRGRGSHL 258
           KGK+SKK GAKALRS+GTSE KE+HD SPP ADF+LVRPPSKFVKRSPIPSP RG GSH 
Sbjct: 163 KGKSSKKAGAKALRSEGTSEEKEIHDPSPPAADFQLVRPPSKFVKRSPIPSPPRGNGSHP 222

Query: 259 RVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKVDRNIQK 298
           RVDA+QAIAESRELK PSI+NMKLTELKALAKSRGIK    ++K
Sbjct: 223 RVDATQAIAESRELKFPSIKNMKLTELKALAKSRGIKGYSKLKK 266

BLAST of ClCG03G007530 vs. NCBI nr
Match: XP_038893910.1 (SAP-like protein BP-73 isoform X1 [Benincasa hispida])

HSP 1 Score: 308.5 bits (789), Expect = 6.3e-80
Identity = 174/228 (76.32%), Postives = 193/228 (84.65%), Query Frame = 0

Query: 79  VFEVNNLFLLSSLFIAEFVDLV-----PDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHK 138
           +F + NL  ++ ++ ++ + L      PDG  GNRPPRR SAPGKTRKNE SSRKTEAH 
Sbjct: 43  LFNLLNLADIADVYPSKGIQLSVSNNRPDGKAGNRPPRRISAPGKTRKNEPSSRKTEAHM 102

Query: 139 NEEDLKESKYNNQEEIIALFRKIQTSIAKESASSNDEESCKDEHGAESILETLRESRKQV 198
           NEEDLK+SKYNNQEEIIALFRKI+TSIAKESASSNDEESCKDEHGAESILETLRESRKQV
Sbjct: 103 NEEDLKKSKYNNQEEIIALFRKIETSIAKESASSNDEESCKDEHGAESILETLRESRKQV 162

Query: 199 K----GKTSKKVGAKALRSKGTSEGKEMHDTSPPVADFKLVRPPSKFVKRSPIPSPQRGR 258
           K    GK+SKK GAKALRS+GTSE KE+HD SPP ADF+LVRPPSKFVKRSPIPSP RG 
Sbjct: 163 KELWTGKSSKKAGAKALRSEGTSEEKEIHDPSPPAADFQLVRPPSKFVKRSPIPSPPRGN 222

Query: 259 GSHLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKVDRNIQK 298
           GSH RVDA+QAIAESRELK PSI+NMKLTELKALAKSRGIK    ++K
Sbjct: 223 GSHPRVDATQAIAESRELKFPSIKNMKLTELKALAKSRGIKGYSKLKK 270

BLAST of ClCG03G007530 vs. NCBI nr
Match: XP_038893912.1 (SAP-like protein BP-73 isoform X3 [Benincasa hispida])

HSP 1 Score: 307.8 bits (787), Expect = 1.1e-79
Identity = 170/201 (84.58%), Postives = 180/201 (89.55%), Query Frame = 0

Query: 101 PDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSI 160
           PDG  GNRPPRR SAPGKTRKNE SSRKTEAH NEEDLK+SKYNNQEEIIALFRKI+TSI
Sbjct: 49  PDGKAGNRPPRRISAPGKTRKNEPSSRKTEAHMNEEDLKKSKYNNQEEIIALFRKIETSI 108

Query: 161 AKESASSNDEESCKDEHGAESILETLRESRKQVK----GKTSKKVGAKALRSKGTSEGKE 220
           AKESASSNDEESCKDEHGAESILETLRESRKQVK    GK+SKK GAKALRS+GTSE KE
Sbjct: 109 AKESASSNDEESCKDEHGAESILETLRESRKQVKELWTGKSSKKAGAKALRSEGTSEEKE 168

Query: 221 MHDTSPPVADFKLVRPPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPSIENMK 280
           +HD SPP ADF+LVRPPSKFVKRSPIPSP RG GSH RVDA+QAIAESRELK PSI+NMK
Sbjct: 169 IHDPSPPAADFQLVRPPSKFVKRSPIPSPPRGNGSHPRVDATQAIAESRELKFPSIKNMK 228

Query: 281 LTELKALAKSRGIKVDRNIQK 298
           LTELKALAKSRGIK    ++K
Sbjct: 229 LTELKALAKSRGIKGYSKLKK 249

BLAST of ClCG03G007530 vs. NCBI nr
Match: XP_008446702.1 (PREDICTED: SAP-like protein BP-73 [Cucumis melo] >KAA0057053.1 SAP-like protein BP-73 [Cucumis melo var. makuwa])

HSP 1 Score: 262.3 bits (669), Expect = 5.2e-66
Identity = 154/198 (77.78%), Postives = 163/198 (82.32%), Query Frame = 0

Query: 101 PDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSI 160
           PDGN  NRPPRRNS PGKTRK+E SSRK EA KNEE++K+SK N+QEEIIALFRKIQ SI
Sbjct: 77  PDGNARNRPPRRNSLPGKTRKSESSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASI 136

Query: 161 AKESASSNDEESCKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEMHDT 220
           AKESASS DEES KDEHGA SILETLRE RKQ+KGKTSKK GAK  RSKGTSE KEMHD 
Sbjct: 137 AKESASSIDEESHKDEHGATSILETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDP 196

Query: 221 S-PPVADFKLVRPPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTE 280
           S PP ADFKLVRPPSKFVKRSPIP          +VDASQAIAESRELK PSIENMKL E
Sbjct: 197 SPPPAADFKLVRPPSKFVKRSPIPP---------KVDASQAIAESRELKFPSIENMKLAE 256

Query: 281 LKALAKSRGIKVDRNIQK 298
           LKALAKSRGIK    ++K
Sbjct: 257 LKALAKSRGIKGYSKLKK 265

BLAST of ClCG03G007530 vs. NCBI nr
Match: XP_011648505.1 (uncharacterized protein LOC105434499, partial [Cucumis sativus])

HSP 1 Score: 254.6 bits (649), Expect = 1.1e-63
Identity = 151/198 (76.26%), Postives = 163/198 (82.32%), Query Frame = 0

Query: 101 PDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSI 160
           PDGN GNRPPRRNS PGK RK+E SSRKTE  K+EE +K+S+ N+QEE+IALFRKIQTSI
Sbjct: 70  PDGNAGNRPPRRNSLPGKARKSESSSRKTETPKDEESVKKSETNDQEEVIALFRKIQTSI 129

Query: 161 AKESASSNDEESCKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEMHDT 220
           AKESASS DEES KDE+   SILETLRESRKQ+KGKTSKK GAK LRSKG SE KEMHD 
Sbjct: 130 AKESASSIDEESRKDENA--SILETLRESRKQLKGKTSKKAGAKVLRSKGKSEEKEMHDP 189

Query: 221 S-PPVADFKLVRPPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTE 280
           S PP ADFKLVRPPSKFVKRSPIP         L+VDASQAIAESRELK PS ENMKLTE
Sbjct: 190 SPPPAADFKLVRPPSKFVKRSPIP---------LKVDASQAIAESRELKFPSTENMKLTE 249

Query: 281 LKALAKSRGIKVDRNIQK 298
           LKALAKSRGIK    ++K
Sbjct: 250 LKALAKSRGIKGYSKLKK 256

BLAST of ClCG03G007530 vs. ExPASy TrEMBL
Match: A0A5A7UMB7 (SAP-like protein BP-73 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002410 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 2.5e-66
Identity = 154/198 (77.78%), Postives = 163/198 (82.32%), Query Frame = 0

Query: 101 PDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSI 160
           PDGN  NRPPRRNS PGKTRK+E SSRK EA KNEE++K+SK N+QEEIIALFRKIQ SI
Sbjct: 77  PDGNARNRPPRRNSLPGKTRKSESSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASI 136

Query: 161 AKESASSNDEESCKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEMHDT 220
           AKESASS DEES KDEHGA SILETLRE RKQ+KGKTSKK GAK  RSKGTSE KEMHD 
Sbjct: 137 AKESASSIDEESHKDEHGATSILETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDP 196

Query: 221 S-PPVADFKLVRPPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTE 280
           S PP ADFKLVRPPSKFVKRSPIP          +VDASQAIAESRELK PSIENMKL E
Sbjct: 197 SPPPAADFKLVRPPSKFVKRSPIPP---------KVDASQAIAESRELKFPSIENMKLAE 256

Query: 281 LKALAKSRGIKVDRNIQK 298
           LKALAKSRGIK    ++K
Sbjct: 257 LKALAKSRGIKGYSKLKK 265

BLAST of ClCG03G007530 vs. ExPASy TrEMBL
Match: A0A1S3BFQ9 (SAP-like protein BP-73 OS=Cucumis melo OX=3656 GN=LOC103489342 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 2.5e-66
Identity = 154/198 (77.78%), Postives = 163/198 (82.32%), Query Frame = 0

Query: 101 PDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSI 160
           PDGN  NRPPRRNS PGKTRK+E SSRK EA KNEE++K+SK N+QEEIIALFRKIQ SI
Sbjct: 77  PDGNARNRPPRRNSLPGKTRKSESSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASI 136

Query: 161 AKESASSNDEESCKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEMHDT 220
           AKESASS DEES KDEHGA SILETLRE RKQ+KGKTSKK GAK  RSKGTSE KEMHD 
Sbjct: 137 AKESASSIDEESHKDEHGATSILETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDP 196

Query: 221 S-PPVADFKLVRPPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTE 280
           S PP ADFKLVRPPSKFVKRSPIP          +VDASQAIAESRELK PSIENMKL E
Sbjct: 197 SPPPAADFKLVRPPSKFVKRSPIPP---------KVDASQAIAESRELKFPSIENMKLAE 256

Query: 281 LKALAKSRGIKVDRNIQK 298
           LKALAKSRGIK    ++K
Sbjct: 257 LKALAKSRGIKGYSKLKK 265

BLAST of ClCG03G007530 vs. ExPASy TrEMBL
Match: A0A0A0LX66 (Rho_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G470300 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 5.2e-64
Identity = 151/198 (76.26%), Postives = 163/198 (82.32%), Query Frame = 0

Query: 101 PDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSI 160
           PDGN GNRPPRRNS PGK RK+E SSRKTE  K+EE +K+S+ N+QEE+IALFRKIQTSI
Sbjct: 49  PDGNAGNRPPRRNSLPGKARKSESSSRKTETPKDEESVKKSETNDQEEVIALFRKIQTSI 108

Query: 161 AKESASSNDEESCKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEMHDT 220
           AKESASS DEES KDE+   SILETLRESRKQ+KGKTSKK GAK LRSKG SE KEMHD 
Sbjct: 109 AKESASSIDEESRKDENA--SILETLRESRKQLKGKTSKKAGAKVLRSKGKSEEKEMHDP 168

Query: 221 S-PPVADFKLVRPPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTE 280
           S PP ADFKLVRPPSKFVKRSPIP         L+VDASQAIAESRELK PS ENMKLTE
Sbjct: 169 SPPPAADFKLVRPPSKFVKRSPIP---------LKVDASQAIAESRELKFPSTENMKLTE 228

Query: 281 LKALAKSRGIKVDRNIQK 298
           LKALAKSRGIK    ++K
Sbjct: 229 LKALAKSRGIKGYSKLKK 235

BLAST of ClCG03G007530 vs. ExPASy TrEMBL
Match: A0A6J1CGN3 (uncharacterized protein LOC111010657 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010657 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 6.8e-56
Identity = 137/197 (69.54%), Postives = 156/197 (79.19%), Query Frame = 0

Query: 103 GNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAK 162
           GN G RPPRR+S PG+TRKNE    + EA    EDLK  K NNQEEIIALFRKIQTSIAK
Sbjct: 49  GNAGQRPPRRSSGPGRTRKNE--PNRNEA---AEDLKNPKSNNQEEIIALFRKIQTSIAK 108

Query: 163 ESASSNDEESCKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEMHDTSP 222
           +SA++ DE+S +DE GAESILE+LRESRKQVKG+TSKK G K LR KG SE  EM+ TS 
Sbjct: 109 DSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMYHTS- 168

Query: 223 PVADFKLVRPPSKFVKRSPIPSP--QRGRGSHLRVDASQAIAESRELKVPSIENMKLTEL 282
           P A+FKLVRPPSKFVKRSPIPSP  + G  S LR + SQAIAESRE+K PS+ENMKLTEL
Sbjct: 169 PAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKLTEL 228

Query: 283 KALAKSRGIKVDRNIQK 298
           KA+AKSRGIK    ++K
Sbjct: 229 KAVAKSRGIKGYSKLKK 239

BLAST of ClCG03G007530 vs. ExPASy TrEMBL
Match: A0A6J1CF22 (uncharacterized protein LOC111010657 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010657 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 6.8e-56
Identity = 137/197 (69.54%), Postives = 156/197 (79.19%), Query Frame = 0

Query: 103 GNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAK 162
           GN G RPPRR+S PG+TRKNE    + EA    EDLK  K NNQEEIIALFRKIQTSIAK
Sbjct: 70  GNAGQRPPRRSSGPGRTRKNE--PNRNEA---AEDLKNPKSNNQEEIIALFRKIQTSIAK 129

Query: 163 ESASSNDEESCKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEMHDTSP 222
           +SA++ DE+S +DE GAESILE+LRESRKQVKG+TSKK G K LR KG SE  EM+ TS 
Sbjct: 130 DSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMYHTS- 189

Query: 223 PVADFKLVRPPSKFVKRSPIPSP--QRGRGSHLRVDASQAIAESRELKVPSIENMKLTEL 282
           P A+FKLVRPPSKFVKRSPIPSP  + G  S LR + SQAIAESRE+K PS+ENMKLTEL
Sbjct: 190 PAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKLTEL 249

Query: 283 KALAKSRGIKVDRNIQK 298
           KA+AKSRGIK    ++K
Sbjct: 250 KAVAKSRGIKGYSKLKK 260

BLAST of ClCG03G007530 vs. TAIR 10
Match: AT4G18740.1 (Rho termination factor )

HSP 1 Score: 75.5 bits (184), Expect = 8.4e-14
Identity = 65/190 (34.21%), Postives = 96/190 (50.53%), Query Frame = 0

Query: 117 GKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAKESA-----SSNDEE 176
           G+++K  V  +K    +     K    +NQEEII+L ++IQ+SI+K  +       N +E
Sbjct: 70  GRSKKGCVCCKKPSDRRTSNPSK----SNQEEIISLLKRIQSSISKGESRGVEEEKNSDE 129

Query: 177 SCKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEMHDTSPPVADFKLVR 236
           S K++   ++IL+ L +SRK+ +G TS K                     PP    +L R
Sbjct: 130 SSKEKPLTKAILDVLEKSRKKTEGDTSVK-------------------EKPPKRQVELPR 189

Query: 237 PPSKFVKRSPIPSPQRGRGSHLRV---DASQAIAESRELKVPSIENMKLTELKALAKSRG 296
           PPS FVKR+P+ S   G    L V   D +      +E K   IE MKL ELK +AK+RG
Sbjct: 190 PPSSFVKRTPLSSSASGPRGKLPVSNSDKALGKLTKKEEKASLIETMKLAELKEVAKNRG 236

Query: 297 IKVDRNIQKT 299
           IK    ++K+
Sbjct: 250 IKGYSKLRKS 236

BLAST of ClCG03G007530 vs. TAIR 10
Match: AT4G18740.2 (Rho termination factor )

HSP 1 Score: 53.5 bits (127), Expect = 3.4e-07
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 0

Query: 117 GKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAKESA-----SSNDEE 176
           G+++K  V  +K    +     K    +NQEEII+L ++IQ+SI+K  +       N +E
Sbjct: 70  GRSKKGCVCCKKPSDRRTSNPSK----SNQEEIISLLKRIQSSISKGESRGVEEEKNSDE 129

Query: 177 SCKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEMHDTSPPVADFKLVR 236
           S K++   ++IL+ L +SRK+ +G TS K                     PP    +L R
Sbjct: 130 SSKEKPLTKAILDVLEKSRKKTEGDTSVK-------------------EKPPKRQVELPR 183

Query: 237 PPSKFVKRSPIPSPQRG 249
           PPS FVKR+P+ S   G
Sbjct: 190 PPSSFVKRTPLSSSASG 183

BLAST of ClCG03G007530 vs. TAIR 10
Match: AT4G18740.3 (Rho termination factor )

HSP 1 Score: 53.5 bits (127), Expect = 3.4e-07
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 0

Query: 117 GKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAKESA-----SSNDEE 176
           G+++K  V  +K    +     K    +NQEEII+L ++IQ+SI+K  +       N +E
Sbjct: 45  GRSKKGCVCCKKPSDRRTSNPSK----SNQEEIISLLKRIQSSISKGESRGVEEEKNSDE 104

Query: 177 SCKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEMHDTSPPVADFKLVR 236
           S K++   ++IL+ L +SRK+ +G TS K                     PP    +L R
Sbjct: 105 SSKEKPLTKAILDVLEKSRKKTEGDTSVK-------------------EKPPKRQVELPR 158

Query: 237 PPSKFVKRSPIPSPQRG 249
           PPS FVKR+P+ S   G
Sbjct: 165 PPSSFVKRTPLSSSASG 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038893911.11.1e-8177.68SAP-like protein BP-73 isoform X2 [Benincasa hispida][more]
XP_038893910.16.3e-8076.32SAP-like protein BP-73 isoform X1 [Benincasa hispida][more]
XP_038893912.11.1e-7984.58SAP-like protein BP-73 isoform X3 [Benincasa hispida][more]
XP_008446702.15.2e-6677.78PREDICTED: SAP-like protein BP-73 [Cucumis melo] >KAA0057053.1 SAP-like protein ... [more]
XP_011648505.11.1e-6376.26uncharacterized protein LOC105434499, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UMB72.5e-6677.78SAP-like protein BP-73 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9... [more]
A0A1S3BFQ92.5e-6677.78SAP-like protein BP-73 OS=Cucumis melo OX=3656 GN=LOC103489342 PE=4 SV=1[more]
A0A0A0LX665.2e-6476.26Rho_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G470300 PE=4 ... [more]
A0A6J1CGN36.8e-5669.54uncharacterized protein LOC111010657 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CF226.8e-5669.54uncharacterized protein LOC111010657 isoform X1 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
AT4G18740.18.4e-1434.21Rho termination factor [more]
AT4G18740.23.4e-0732.85Rho termination factor [more]
AT4G18740.33.4e-0732.85Rho termination factor [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..141
NoneNo IPR availablePANTHERPTHR34449RHO TERMINATION FACTORcoord: 95..290
NoneNo IPR availablePANTHERPTHR34449:SF2RHO TERMINATION FACTORcoord: 95..290

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G007530.2ClCG03G007530.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006353 DNA-templated transcription, termination