ClCG03G006790 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G006790
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	protein TIFY 5A-like
Location	CG_Chr03: 7626011 .. 7626419 (+)
RNA-Seq Expression	ClCG03G006790
Synteny	ClCG03G006790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCACTTCCTCAACTGCAACTTGGAACTTTGTCTCTCTCCGCCTTCTTCCTCTCCCTCCACCACCACCACTACCGTCACCGCCAACACCGGACTCCTCCTACCCGATCTTACCGAGCTCCAGGTACCCATTTCTCTCTTTATTTTCTCTTCCTCCCACTCCAATTAGTAATTAATTATTCATATGGTGTGTTGTGTTATTGTAGGCGAGGGCAATCATAGTACGAGCCACGAGACAAATGGAGGCGGAGAGAAGATCGACGATATGTCGGATCACTTCACCGGCCACCGCAGAACAAGTACCGATGAAGAGTGGAGCTAACAACCCTTCCATGAGGAGATCATTGCAGAGGTTTTTACAAAAGAGAAAGCATCGAACTCAAACACTTTCACCCTACACTCACTAA

mRNA sequence

ATGGAGCACTTCCTCAACTGCAACTTGGAACTTTGTCTCTCTCCGCCTTCTTCCTCTCCCTCCACCACCACCACTACCGTCACCGCCAACACCGGACTCCTCCTACCCGATCTTACCGAGCTCCAGGCGAGGGCAATCATAGTACGAGCCACGAGACAAATGGAGGCGGAGAGAAGATCGACGATATGTCGGATCACTTCACCGGCCACCGCAGAACAAGTACCGATGAAGAGTGGAGCTAACAACCCTTCCATGAGGAGATCATTGCAGAGGTTTTTACAAAAGAGAAAGCATCGAACTCAAACACTTTCACCCTACACTCACTAA

Coding sequence (CDS)

ATGGAGCACTTCCTCAACTGCAACTTGGAACTTTGTCTCTCTCCGCCTTCTTCCTCTCCCTCCACCACCACCACTACCGTCACCGCCAACACCGGACTCCTCCTACCCGATCTTACCGAGCTCCAGGCGAGGGCAATCATAGTACGAGCCACGAGACAAATGGAGGCGGAGAGAAGATCGACGATATGTCGGATCACTTCACCGGCCACCGCAGAACAAGTACCGATGAAGAGTGGAGCTAACAACCCTTCCATGAGGAGATCATTGCAGAGGTTTTTACAAAAGAGAAAGCATCGAACTCAAACACTTTCACCCTACACTCACTAA

Protein sequence

MEHFLNCNLELCLSPPSSSPSTTTTTVTANTGLLLPDLTELQARAIIVRATRQMEAERRSTICRITSPATAEQVPMKSGANNPSMRRSLQRFLQKRKHRTQTLSPYTH

Homology

[Close]

BLAST of ClCG03G006790 vs. NCBI nr
Match: XP_038895134.1 (protein TIFY 5A-like [Benincasa hispida])

HSP 1 Score: 141.4 bits (355), Expect = 4.7e-30
Identity = 86/119 (72.27%), Postives = 92/119 (77.31%), Query Frame = 0


Query: 1   MEHFLNCNLELCLSPPSSSPSTTTTTVTANTG-----------LLLPDLTELQARAIIVR 60
           ME FLNCNLELCLSPPSSSPST   T T +T            + + DLTELQARAIIVR
Sbjct: 1   MEPFLNCNLELCLSPPSSSPSTIAVTATNSTSTSQHNHLSPTEVPILDLTELQARAIIVR 60

Query: 61  ATRQMEAERRSTICRITSPATAEQVPMKSGANNPSMRRSLQRFLQKRKHRTQTLSPYTH 109
           ATRQMEAERRST  RI+ P T EQ+ MKSGA +PSMRRSLQRFLQKRKHRTQTLSPYTH
Sbjct: 61  ATRQMEAERRSTTRRISLP-TTEQISMKSGA-SPSMRRSLQRFLQKRKHRTQTLSPYTH 117

[Close]

BLAST of ClCG03G006790 vs. NCBI nr
Match: XP_008444384.1 (PREDICTED: protein TIFY 5A-like [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-28
Identity = 83/122 (68.03%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MEHFLNCNLELCLSPPSSSPSTTTTTVTANT--------------GLLLPDLTELQARAI 60
           MEHF N NLELCLSPPSSSPSTTTTT TA                G+  PDLTE+QA+AI
Sbjct: 1   MEHFPNFNLELCLSPPSSSPSTTTTTTTAAAASNSSSQHNHITPIGVPTPDLTEIQAKAI 60

Query: 61  IVRATRQMEAERRSTICRITSPATAEQVPMKSGANNPSMRRSLQRFLQKRKHRTQTLSPY 109
           IV ATRQMEAERR T CRI+S  +AE+V M+SG  +PSMRRSLQRFLQKRK R QTLSPY
Sbjct: 61  IVEATRQMEAERRWTTCRISS--SAERVWMRSGEASPSMRRSLQRFLQKRKLRIQTLSPY 120

[Close]

BLAST of ClCG03G006790 vs. NCBI nr
Match: KAG6583895.1 (Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.2 bits (339), Expect = 3.4e-28
Identity = 81/118 (68.64%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 1   MEHFLNCNLELCLSPPSSSPSTTTTTVTA----------NTGLLLPDLTELQARAIIVRA 60
           ME+ LNCNLELCLSPPSSSPST T T  +           T + +PD TELQARAIIVRA
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATATANSMSTSCHNHIDPTRVPIPDHTELQARAIIVRA 60

Query: 61  TRQMEAERRSTICRITSPATAEQVPMKSGANNPSMRRSLQRFLQKRKHRTQTLSPYTH 109
           T QMEAERR T C I+SP   ++V MKSGA NPSMRRSLQRFLQKRKHR QTLSPY+H
Sbjct: 61  TTQMEAERRLTTCHISSP--TQRVSMKSGA-NPSMRRSLQRFLQKRKHRIQTLSPYSH 115

[Close]

BLAST of ClCG03G006790 vs. NCBI nr
Match: XP_023520316.1 (protein TIFY 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.8 bits (338), Expect = 4.4e-28
Identity = 80/118 (67.80%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 1   MEHFLNCNLELCLSPPSSSPSTTTTTVTAN----------TGLLLPDLTELQARAIIVRA 60
           ME+ LNCNLELCLSPPSSSPST T T  +           T + +PDLTELQARAIIVRA
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPTRVPIPDLTELQARAIIVRA 60

Query: 61  TRQMEAERRSTICRITSPATAEQVPMKSGANNPSMRRSLQRFLQKRKHRTQTLSPYTH 109
           T QME ERR T C I+SP   ++V MKSGA +PSMRRSLQRFLQKRKHR QTLSPY+H
Sbjct: 61  TTQMEVERRLTTCHISSP--KQRVSMKSGA-SPSMRRSLQRFLQKRKHRIQTLSPYSH 115

[Close]

BLAST of ClCG03G006790 vs. NCBI nr
Match: KAG7019513.1 (Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.0 bits (336), Expect = 7.5e-28
Identity = 80/118 (67.80%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 1   MEHFLNCNLELCLSPPSSSPSTTTTTVTAN----------TGLLLPDLTELQARAIIVRA 60
           ME+ LNCNLELCLSPPSSSPST T T  +           T + +PD TELQARAIIVRA
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPTRVPIPDHTELQARAIIVRA 60

Query: 61  TRQMEAERRSTICRITSPATAEQVPMKSGANNPSMRRSLQRFLQKRKHRTQTLSPYTH 109
           T QMEAERR T C I+SP   ++V MKSGA +PSMRRSLQRFLQKRKHR QTLSPY+H
Sbjct: 61  TTQMEAERRLTTCHISSP--TQRVSMKSGA-SPSMRRSLQRFLQKRKHRIQTLSPYSH 115

[Close]

BLAST of ClCG03G006790 vs. ExPASy Swiss-Prot
Match: Q8LBM2 (Protein TIFY 5A OS=Arabidopsis thaliana OX=3702 GN=TIFY5A PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.9e-04
Identity = 48/128 (37.50%), Postives = 64/128 (50.00%), Query Frame = 0


Query: 6   NCNLELCLSPPS-SSPSTTTTTVTANTGLLLP---------------------DLTELQA 65
           NC+LEL L P S  S S+ TT+V  +T    P                     D+T LQA
Sbjct: 6   NCDLELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQA 65

Query: 66  RAIIVRATRQMEAERRSTICRITSPATA---EQVPMKSGANNP--SMRRSLQRFLQKRKH 107
           R+II  A+R+M+ +  S      + +T+    Q+P      NP  SM++SLQ FLQKRK 
Sbjct: 66  RSIISIASREMKTKSSSNGSDPPNKSTSFHHNQLP------NPKASMKKSLQSFLQKRKI 125

[Close]

BLAST of ClCG03G006790 vs. ExPASy TrEMBL
Match: A0A1S3BA64 (protein TIFY 5A-like OS=Cucumis melo OX=3656 GN=LOC103487726 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.6e-29
Identity = 83/122 (68.03%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MEHFLNCNLELCLSPPSSSPSTTTTTVTANT--------------GLLLPDLTELQARAI 60
           MEHF N NLELCLSPPSSSPSTTTTT TA                G+  PDLTE+QA+AI
Sbjct: 1   MEHFPNFNLELCLSPPSSSPSTTTTTTTAAAASNSSSQHNHITPIGVPTPDLTEIQAKAI 60

Query: 61  IVRATRQMEAERRSTICRITSPATAEQVPMKSGANNPSMRRSLQRFLQKRKHRTQTLSPY 109
           IV ATRQMEAERR T CRI+S  +AE+V M+SG  +PSMRRSLQRFLQKRK R QTLSPY
Sbjct: 61  IVEATRQMEAERRWTTCRISS--SAERVWMRSGEASPSMRRSLQRFLQKRKLRIQTLSPY 120

[Close]

BLAST of ClCG03G006790 vs. ExPASy TrEMBL
Match: A0A6J1EN30 (protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111434085 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.6e-28
Identity = 80/116 (68.97%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MEHFLNCNLELCLSPPSSSPSTTTTTVTAN--------TGLLLPDLTELQARAIIVRATR 60
           ME+ LNCNLELCLSPPSSSPST T   T+         T + +PD TELQARAIIVRAT 
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATANSTSTSCHNHIDPTRVPIPDHTELQARAIIVRATT 60

Query: 61  QMEAERRSTICRITSPATAEQVPMKSGANNPSMRRSLQRFLQKRKHRTQTLSPYTH 109
           QMEAERR T C I+SP   ++V MKSGA +PSMRRSLQRFLQKRKHR QTLSPY+H
Sbjct: 61  QMEAERRLTTCHISSP--TQRVSMKSGA-SPSMRRSLQRFLQKRKHRIQTLSPYSH 113

[Close]

BLAST of ClCG03G006790 vs. ExPASy TrEMBL
Match: A0A6J1KQP6 (protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111495613 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.1e-27
Identity = 81/118 (68.64%), Postives = 87/118 (73.73%), Query Frame = 0


Query: 1   MEHFLNCNLELCLSPPSSSPSTTTTTVTAN----------TGLLLPDLTELQARAIIVRA 60
           ME+ LNCNLELCLSPPSSSPSTT T   AN          T + L DLTELQARAIIVRA
Sbjct: 1   MENILNCNLELCLSPPSSSPSTTATVAAANSTSTSCHNHPTRVPLLDLTELQARAIIVRA 60

Query: 61  TRQMEAERRSTICRITSPATAEQVPMKSGANNPSMRRSLQRFLQKRKHRTQTLSPYTH 109
             QMEAERR T C I+ P   E + MKSGA +PSMRRSLQRFLQKRKHR QTLSPY+H
Sbjct: 61  ITQMEAERRLTTCYISLP--TEPMSMKSGA-SPSMRRSLQRFLQKRKHRIQTLSPYSH 115

[Close]

BLAST of ClCG03G006790 vs. ExPASy TrEMBL
Match: A0A0A0LX13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435790 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.5e-23
Identity = 76/121 (62.81%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 1   MEHFLNCNLELCLSPPSSSPSTTTTT--VTANT----------GLLLPDLTELQARAIIV 60
           ME   N NLELCLSPPSSSPSTTT+T  + +N+          GL  PDLTE+QA+AIIV
Sbjct: 1   MEPLSNFNLELCLSPPSSSPSTTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAKAIIV 60

Query: 61  RATRQMEAER-RSTICRITSPATAEQVPMKSGANNPSMRRSLQRFLQKRKHRTQTLSPYT 109
           +ATRQMEAER R   CRI+S  +AE+V M +G  +PS+RRSLQRFLQKRK R QTLSPY 
Sbjct: 61  QATRQMEAERSRWRTCRISS--SAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSPYA 119

[Close]

BLAST of ClCG03G006790 vs. ExPASy TrEMBL
Match: A0A6J1CG02 (protein TIFY 5A-like OS=Momordica charantia OX=3673 GN=LOC111010877 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 65/120 (54.17%), Postives = 76/120 (63.33%), Query Frame = 0


Query: 2   EHFLNCNLELCLSPPSSSP-------STTTTT-------VTANTGLLLPDLTELQARAII 61
           +H L+CNLELCLSPP + P       STTT+T       V  + G  + DLTELQARAII
Sbjct: 13  QHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAII 72

Query: 62  VRATRQMEAERRSTICRITSPATAEQVPMKSGANNPSMRRSLQRFLQKRKHRTQTLSPYT 108
           + ATRQM  E R T CR  S   AE+        + SM+RSLQRFLQKRKHR QTL+PYT
Sbjct: 73  IGATRQM--EERKTTCRTRS---AEE-------KSSSMKRSLQRFLQKRKHRIQTLTPYT 120

[Close]

BLAST of ClCG03G006790 vs. TAIR 10
Match: AT1G30135.1 (jasmonate-zim-domain protein 8 )

HSP 1 Score: 44.7 bits (104), Expect = 5.6e-05
Identity = 48/128 (37.50%), Postives = 64/128 (50.00%), Query Frame = 0


Query: 6   NCNLELCLSPPS-SSPSTTTTTVTANTGLLLP---------------------DLTELQA 65
           NC+LEL L P S  S S+ TT+V  +T    P                     D+T LQA
Sbjct: 6   NCDLELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQA 65

Query: 66  RAIIVRATRQMEAERRSTICRITSPATA---EQVPMKSGANNP--SMRRSLQRFLQKRKH 107
           R+II  A+R+M+ +  S      + +T+    Q+P      NP  SM++SLQ FLQKRK 
Sbjct: 66  RSIISIASREMKTKSSSNGSDPPNKSTSFHHNQLP------NPKASMKKSLQSFLQKRKI 125

The following BLAST results are available for this feature:

BLAST of ClCG03G006790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895134.1	4.7e-30	72.27	protein TIFY 5A-like [Benincasa hispida]	[more]
XP_008444384.1	1.2e-28	68.03	PREDICTED: protein TIFY 5A-like [Cucumis melo]	[more]
KAG6583895.1	3.4e-28	68.64	Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023520316.1	4.4e-28	67.80	protein TIFY 5A-like [Cucurbita pepo subsp. pepo]	[more]
KAG7019513.1	7.5e-28	67.80	Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of ClCG03G006790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LBM2	7.9e-04	37.50	Protein TIFY 5A OS=Arabidopsis thaliana OX=3702 GN=TIFY5A PE=1 SV=1	[more]

BLAST of ClCG03G006790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BA64	5.6e-29	68.03	protein TIFY 5A-like OS=Cucumis melo OX=3656 GN=LOC103487726 PE=4 SV=1	[more]
A0A6J1EN30	3.6e-28	68.97	protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111434085 PE=4 SV=1	[more]
A0A6J1KQP6	3.1e-27	68.64	protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111495613 PE=4 SV=1	[more]
A0A0A0LX13	3.5e-23	62.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435790 PE=4 SV=1	[more]
A0A6J1CG02	1.2e-15	54.17	protein TIFY 5A-like OS=Momordica charantia OX=3673 GN=LOC111010877 PE=4 SV=1	[more]

BLAST of ClCG03G006790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30135.1	5.6e-05	37.50	jasmonate-zim-domain protein 8	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018467	CO/COL/TOC1, conserved site	PFAM	PF09425	Jas_motif	coord: 86..106 e-value: 6.4E-9 score: 35.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..89
None	No IPR available	PANTHER	PTHR33077:SF17	PROTEIN TIFY 5B	coord: 30..106
IPR040390	TIFY/JAZ family	PANTHER	PTHR33077	PROTEIN TIFY 4A-RELATED-RELATED	coord: 30..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G006790.1	ClCG03G006790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031347	regulation of defense response
biological_process	GO:2000022	regulation of jasmonic acid mediated signaling pathway
biological_process	GO:0009611	response to wounding
cellular_component	GO:0005634	nucleus