ClCG03G006700 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G006700
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Sm domain-containing protein
Location	CG_Chr03: 7505471 .. 7505809 (+)
RNA-Seq Expression	ClCG03G006700
Synteny	ClCG03G006700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGATTTTAGATCGTGTAGGAAAGGTAAGAAAGCTGCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTAGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGACGCAGTAGAGTATCGTAGCACTCGACGTAACTCGCCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGTCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCACTGCTATCGGTTTAG

mRNA sequence

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGATTTTAGATCGTGTAGGAAAGGTAAGAAAGCTGCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTAGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGACGCAGTAGAGTATCGTAGCACTCGACGTAACTCGCCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGTCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCACTGCTATCGGTTTAG

Coding sequence (CDS)

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGATTTTAGATCGTGTAGGAAAGGTAAGAAAGCTGCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTAGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGACGCAGTAGAGTATCGTAGCACTCGACGTAACTCGCCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGTCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCACTGCTATCGGTTTAG

Protein sequence

MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV

Homology

[Close]

BLAST of ClCG03G006700 vs. NCBI nr
Match: XP_011649337.1 (uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical protein Csa_014187 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 6.3e-54
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSNVESNPE LD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of ClCG03G006700 vs. NCBI nr
Match: XP_023520042.1 (uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo] >KAG7019507.1 Small nuclear ribonucleoprotein-associated protein B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215.3 bits (547), Expect = 2.7e-52
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQ GSNVESNP+ LDRVGKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of ClCG03G006700 vs. NCBI nr
Match: XP_008444477.1 (PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo] >KAA0053997.1 Small nuclear ribonucleoprotein family protein isoform 2 [Cucumis melo var. makuwa] >TYK20682.1 Small nuclear ribonucleoprotein family protein isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 4.5e-52
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSN ESN E LD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of ClCG03G006700 vs. NCBI nr
Match: XP_022927243.1 (uncharacterized protein LOC111434149 [Cucurbita moschata])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 105/112 (93.75%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQ G NVESNP+ LDRVGKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of ClCG03G006700 vs. NCBI nr
Match: XP_038893823.1 (uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893824.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893825.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893826.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893827.1 uncharacterized protein LOC120082644 [Benincasa hispida])

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-51
Identity = 104/112 (92.86%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQES GSMVQDGSNVESNPE LDRVGKVR+LLFRRMLIGIKDGRFFLG+FYCIDKQGNI
Sbjct: 1   MEQESEGSMVQDGSNVESNPESLDRVGKVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTR +SPSPMEQRCLGLILIPNSCRVSCH+DSTIDE+LALLSV
Sbjct: 61  ILQDAVEYRSTRHSSPSPMEQRCLGLILIPNSCRVSCHIDSTIDEKLALLSV 112

[Close]

BLAST of ClCG03G006700 vs. ExPASy Swiss-Prot
Match: Q55A45 (Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum OX=44689 GN=snrpb PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.0e-06
Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 23  LDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQ- 82
           + +  K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ 
Sbjct: 4   MPKSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEK 63

Query: 83  RCLGLILIPNSCRVSCHVDSTIDEQLAL 110
           R LG+ILI     VS  V++   E+  L
Sbjct: 64  RTLGMILIRGETVVSMSVEAPPPEEAKL 91

[Close]

BLAST of ClCG03G006700 vs. ExPASy Swiss-Prot
Match: Q6GQ67 (N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-a PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.4e-05
Identity = 35/99 (35.35%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 3   QESGGSMVQDGSNVESNPEILDRV-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNII 62
           +E+G S     S  +S+ E  D    K+  LL R M I + DGR  +G F C D+  N+I
Sbjct: 6   EENGCSRQSSPSAGDSDAEPGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVI 65

Query: 63  LQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD 101
           L  A E+     + P   E R LGL ++P    VS  V+
Sbjct: 66  LGSAQEFLRPSDSFP-VREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of ClCG03G006700 vs. ExPASy Swiss-Prot
Match: A2BIG9 (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio OX=7955 GN=naa38 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.4e-05
Identity = 29/74 (39.19%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 28  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLI 87
           K+  LL + M I + DGR  +G F C D+  N+IL  A E+  +  +S S  E R LGL 
Sbjct: 27  KLENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLKS-TDSLSQGEPRVLGLA 86

Query: 88  LIPNSCRVSCHVDS 102
           +IP    VS  V++
Sbjct: 87  MIPGHHVVSIEVET 99

[Close]

BLAST of ClCG03G006700 vs. ExPASy Swiss-Prot
Match: A4IGZ4 (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=8364 GN=naa38 PE=3 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-04
Identity = 34/99 (34.34%), Postives = 48/99 (48.48%), Query Frame = 0


Query: 3   QESGGSMVQDGSNVESNPEILDRV-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNII 62
           +E+G S        +S+ E  D    K+  LL R M I + DGR  +G F C D+  N+I
Sbjct: 6   EENGCSRQSSPGAGDSDAEAGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVI 65

Query: 63  LQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD 101
           L  A E+     + P   E R LGL ++P    VS  V+
Sbjct: 66  LGSAQEFLRPSDSFP-VREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of ClCG03G006700 vs. ExPASy Swiss-Prot
Match: Q6NU60 (N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-b PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.7e-04
Identity = 28/73 (38.36%), Postives = 38/73 (52.05%), Query Frame = 0


Query: 28  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLI 87
           K+  LL R M I + DGR  +G F C D+  N+IL  A E+     +S    E R LGL 
Sbjct: 32  KLESLLNRNMRIQMTDGRSLIGCFLCTDRDCNVILGSAQEFLRP-SDSFRIREPRVLGLA 91

Query: 88  LIPNSCRVSCHVD 101
           ++P    VS  V+
Sbjct: 92  MVPGHHIVSIQVE 103

[Close]

BLAST of ClCG03G006700 vs. ExPASy TrEMBL
Match: A0A0A0LSZ5 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.1e-54
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSNVESNPE LD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of ClCG03G006700 vs. ExPASy TrEMBL
Match: A0A5D3DAS2 (Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00700 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSN ESN E LD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of ClCG03G006700 vs. ExPASy TrEMBL
Match: A0A1S3BAH4 (uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSN ESN E LD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of ClCG03G006700 vs. ExPASy TrEMBL
Match: A0A6J1EKG3 (uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC111434149 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.9e-52
Identity = 105/112 (93.75%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQ G NVESNP+ LDRVGKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of ClCG03G006700 vs. ExPASy TrEMBL
Match: A0A6J1KMW6 (uncharacterized protein LOC111495614 OS=Cucurbita maxima OX=3661 GN=LOC111495614 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.1e-51
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           M+QESGGSMVQ GSNVESNP+ LDRVGKVRKLLFRRML+GIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MDQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLLGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRST R+SPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTWRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of ClCG03G006700 vs. TAIR 10
Match: AT4G18372.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 151.8 bits (382), Expect = 3.4e-37
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQ +  S     S  E +    D + ++RKLLFR+ML+GIKDGRFFLGNF+CIDKQGNI
Sbjct: 1   MEQAAERSSTIVASTSEGSD--FDPISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQD VEYRS RR+SPSP EQRCLG+ILIP+SCR SCHVD +IDEQL+L+ +
Sbjct: 61  ILQDTVEYRSIRRSSPSPTEQRCLGMILIPSSCRTSCHVDCSIDEQLSLIQL 110

The following BLAST results are available for this feature:

BLAST of ClCG03G006700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649337.1	6.3e-54	96.43	uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical ...	[more]
XP_023520042.1	2.7e-52	94.64	uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo] >KAG7019507.1 ...	[more]
XP_008444477.1	4.5e-52	94.64	PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo] >KAA0053997.1 Sma...	[more]
XP_022927243.1	1.0e-51	93.75	uncharacterized protein LOC111434149 [Cucurbita moschata]	[more]
XP_038893823.1	1.3e-51	92.86	uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893824.1 unchara...	[more]

BLAST of ClCG03G006700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q55A45	3.0e-06	32.95	Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum...	[more]
Q6GQ67	7.4e-05	35.35	N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355...	[more]
A2BIG9	7.4e-05	39.19	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio OX=7955 GN=n...	[more]
A4IGZ4	1.3e-04	34.34	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=83...	[more]
Q6NU60	3.7e-04	38.36	N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis OX=8355...	[more]

BLAST of ClCG03G006700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSZ5	3.1e-54	96.43	Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=...	[more]
A0A5D3DAS2	2.2e-52	94.64	Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. ma...	[more]
A0A1S3BAH4	2.2e-52	94.64	uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=...	[more]
A0A6J1EKG3	4.9e-52	93.75	uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC1114341...	[more]
A0A6J1KMW6	4.1e-51	91.96	uncharacterized protein LOC111495614 OS=Cucurbita maxima OX=3661 GN=LOC111495614...	[more]

BLAST of ClCG03G006700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18372.1	3.4e-37	66.07	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.100		coord: 23..106 e-value: 4.0E-17 score: 63.8
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 14..111
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 30..89 e-value: 1.3E-7 score: 31.2
IPR034110	LSM domain containing 1	PANTHER	PTHR10701:SF5	FI06540P	coord: 14..111
IPR034110	LSM domain containing 1	CDD	cd06168	LSMD1	coord: 28..100 e-value: 3.6969E-26 score: 90.6941
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 25..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G006700.1	ClCG03G006700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031417	NatC complex