ClCG03G006670 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G006670
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDUF4218 domain-containing protein
LocationCG_Chr03: 7487341 .. 7487690 (+)
RNA-Seq ExpressionClCG03G006670
SyntenyClCG03G006670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAGAAAACATTGCGACAAACGAGTTGCACGAGATTCAGATTGGAATCGATTATGTGATATCAATGGGAAAGAGAAGACCATCAGCATATTTTTGAAGCAAATACTAATTAAGGCTCGAGTTACTTCACCATTCACACATAGAGGTGGCATTATGACATTTTTACGCCATAAACAAAGAAAGGTATGCAACTCATTTGGTATCTCAATCTATTAACTTCACATCCTATAACTTTAGCTATAAACATGCAGAAAGAAGAAGACAAGAATTTAAGTGATATTGAGTTATTTGCGCTCACTCACAGTAGTGAGAAGAAGGGATGGGTGGATGATACTAAAAAAAGGAATTTA

mRNA sequence

GCAAGAAAACATTGCGACAAACGAGTTGCACGAGATTCAGATTGGAATCGATTATGTGATATCAATGGGAAAGAGAAGACCATCAGCATATTTTTGAAGCAAATACTAATTAAGGCTCGAGTTACTTCACCATTCACACATAGAGGTGGCATTATGACATTTTTACGCCATAAACAAAGAAAGAAAGAAGAAGACAAGAATTTAAGTGATATTGAGTTATTTGCGCTCACTCACAGTAGTGAGAAGAAGGGATGGGTGGATGATACTAAAAAAAGGAATTTA

Coding sequence (CDS)

GCAAGAAAACATTGCGACAAACGAGTTGCACGAGATTCAGATTGGAATCGATTATGTGATATCAATGGGAAAGAGAAGACCATCAGCATATTTTTGAAGCAAATACTAATTAAGGCTCGAGTTACTTCACCATTCACACATAGAGGTGGCATTATGACATTTTTACGCCATAAACAAAGAAAGAAAGAAGAAGACAAGAATTTAAGTGATATTGAGTTATTTGCGCTCACTCACAGTAGTGAGAAGAAGGGATGGGTGGATGATACTAAAAAAAGGAATTTA

Protein sequence

ARKHCDKRVARDSDWNRLCDINGKEKTISIFLKQILIKARVTSPFTHRGGIMTFLRHKQRKKEEDKNLSDIELFALTHSSEKKGWVDDTKKRNL
Homology
BLAST of ClCG03G006670 vs. NCBI nr
Match: KAE8651942.1 (hypothetical protein Csa_006405 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-20
Identity = 56/92 (60.87%), Postives = 65/92 (70.65%), Query Frame = 0

Query: 1   ARKHCDKRVARDSDWNRLCDINGKEKTISIFLKQILIKARVTSPFTHRGGIMTFLRHKQR 60
           ARKHCDKRVA+DSDW RLCD   +E   S    +   KAR   PFTHRGG +TFLRHKQ+
Sbjct: 64  ARKHCDKRVAQDSDWARLCDRWEREGFKS--RSEANTKARSKLPFTHRGGTVTFLRHKQK 123

Query: 61  KKEEDKNLSDIELFALTHSSEKKGWVDDTKKR 93
            KEE K +S+IELF  THS EKK WVD+ K +
Sbjct: 124 MKEEGKEISNIELFQPTHSDEKKRWVDEAKAK 153

BLAST of ClCG03G006670 vs. NCBI nr
Match: KAE8647269.1 (hypothetical protein Csa_018247 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 7.5e-08
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 38 KARVTSPFTHRGGIMTFLRHKQRKKEED-KNLSDIELFALTHSSEKKGWVDDTKKR 93
          KAR T PFTHRG   TFL HK+ K+ ED K L+D+E F LTHSS KKGWV + +++
Sbjct: 6  KARATLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEK 61

BLAST of ClCG03G006670 vs. NCBI nr
Match: KAA0032292.1 (hypothetical protein E6C27_scaffold219G001360 [Cucumis melo var. makuwa] >TYK13514.1 hypothetical protein E5676_scaffold745G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.6e-05
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 0

Query: 48 RGGIMTFLRHKQRKKEEDKNLSDIELFALTHSSEKKGWVDDTK 91
          R G  TFLRH Q+K+EEDK +S+I+LF LT+S+EKK WV++ K
Sbjct: 3  RRGDTTFLRHNQKKEEEDKEVSEIKLFQLTYSNEKKWWVNEAK 45

BLAST of ClCG03G006670 vs. NCBI nr
Match: RVW68393.1 (hypothetical protein CK203_061681 [Vitis vinifera])

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-04
Identity = 35/96 (36.46%), Postives = 49/96 (51.04%), Query Frame = 0

Query: 1   ARKHCDKRVARDSDWNRLCDINGKEKTISIFLKQILIKA--RVTSPFTHRGGIMTFLRHK 60
           AR H    V ++ DW+ LC++   EK    F K+  I +  R   PF HRGG   F  H+
Sbjct: 206 ARLHPPDDVTQE-DWDYLCNLFSLEK----FKKRATINSENREKLPFNHRGGSKPFAFHR 265

Query: 61  QRKK---EEDKNLSDIELFALTHSSEKKGWVDDTKK 92
           Q         +   ++ELF  TH +E KGW++DT K
Sbjct: 266 QHNSMSVATGELQGEVELFRATHYNESKGWINDTAK 296

BLAST of ClCG03G006670 vs. NCBI nr
Match: RVX00842.1 (hypothetical protein CK203_026402 [Vitis vinifera])

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-04
Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = 0

Query: 14  DWNRLCDINGKEKTISIFLKQILIKARVTS--PFTHRGGIMTFLRHKQRKK---EEDKNL 73
           DW+ LC++   EK    F K+  I + +    PF HRGG   F  H+Q         +  
Sbjct: 219 DWDYLCNLFSLEK----FKKRATINSEICEKLPFNHRGGSKPFAFHRQHNSMSVATGELQ 278

Query: 74  SDIELFALTHSSEKKGWVDDTKK 92
            ++ELF  TH +E KGW++DT K
Sbjct: 279 GEVELFRATHYNESKGWINDTTK 297

BLAST of ClCG03G006670 vs. ExPASy TrEMBL
Match: A0A0A0KDT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G383550 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.9e-10
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 0

Query: 21  INGKEKTISIFLKQILIKARVTSPFTHRGGIMTFLRHKQRKKEED-KNLSDIELFALTHS 80
           I+G+EKT   F+ +   KAR T PFTHRG   TFL HK+ K+ ED K L+D+E F LTHS
Sbjct: 41  IDGREKTSKKFM-EANTKARATLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHS 100

Query: 81  SEKKGWVDDTKKR 93
           S KKGWV + +++
Sbjct: 101 SAKKGWVVEAEEK 112

BLAST of ClCG03G006670 vs. ExPASy TrEMBL
Match: A0A0A0LM17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G294860 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 1   ARKHCDKRVARDSDWNRLCDINGKEKTISIFLKQILIKARVTSPFTHRGGIMTFLRHKQR 60
           ARKHCDKRVA+DSDW RLCD   +E   S    +   KAR   PFTHRGG +TFLRHKQ+
Sbjct: 111 ARKHCDKRVAQDSDWARLCDRWEREGFKS--RSEANTKARSKLPFTHRGGTVTFLRHKQK 168

BLAST of ClCG03G006670 vs. ExPASy TrEMBL
Match: A0A5D3CR62 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold745G00100 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.2e-05
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 0

Query: 48 RGGIMTFLRHKQRKKEEDKNLSDIELFALTHSSEKKGWVDDTK 91
          R G  TFLRH Q+K+EEDK +S+I+LF LT+S+EKK WV++ K
Sbjct: 3  RRGDTTFLRHNQKKEEEDKEVSEIKLFQLTYSNEKKWWVNEAK 45

BLAST of ClCG03G006670 vs. ExPASy TrEMBL
Match: A0A438G848 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_061681 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-04
Identity = 35/96 (36.46%), Postives = 49/96 (51.04%), Query Frame = 0

Query: 1   ARKHCDKRVARDSDWNRLCDINGKEKTISIFLKQILIKA--RVTSPFTHRGGIMTFLRHK 60
           AR H    V ++ DW+ LC++   EK    F K+  I +  R   PF HRGG   F  H+
Sbjct: 206 ARLHPPDDVTQE-DWDYLCNLFSLEK----FKKRATINSENREKLPFNHRGGSKPFAFHR 265

Query: 61  QRKK---EEDKNLSDIELFALTHSSEKKGWVDDTKK 92
           Q         +   ++ELF  TH +E KGW++DT K
Sbjct: 266 QHNSMSVATGELQGEVELFRATHYNESKGWINDTAK 296

BLAST of ClCG03G006670 vs. ExPASy TrEMBL
Match: A0A438IVS2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_026402 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-04
Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = 0

Query: 14  DWNRLCDINGKEKTISIFLKQILIKARVTS--PFTHRGGIMTFLRHKQRKK---EEDKNL 73
           DW+ LC++   EK    F K+  I + +    PF HRGG   F  H+Q         +  
Sbjct: 219 DWDYLCNLFSLEK----FKKRATINSEICEKLPFNHRGGSKPFAFHRQHNSMSVATGELQ 278

Query: 74  SDIELFALTHSSEKKGWVDDTKK 92
            ++ELF  TH +E KGW++DT K
Sbjct: 279 GEVELFRATHYNESKGWINDTTK 297

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8651942.11.7e-2060.87hypothetical protein Csa_006405 [Cucumis sativus][more]
KAE8647269.17.5e-0858.93hypothetical protein Csa_018247 [Cucumis sativus][more]
KAA0032292.14.6e-0560.47hypothetical protein E6C27_scaffold219G001360 [Cucumis melo var. makuwa] >TYK135... [more]
RVW68393.15.0e-0436.46hypothetical protein CK203_061681 [Vitis vinifera][more]
RVX00842.15.0e-0436.14hypothetical protein CK203_026402 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KDT83.9e-1053.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G383550 PE=4 SV=1[more]
A0A0A0LM171.9e-0961.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G294860 PE=4 SV=1[more]
A0A5D3CR622.2e-0560.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A438G8482.4e-0436.46Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_061681 PE=4 SV=1[more]
A0A438IVS22.4e-0436.14Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_026402 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004252Probable transposase, Ptta/En/Spm, plantPFAMPF03004Transposase_24coord: 14..91
e-value: 1.7E-7
score: 31.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G006670.1ClCG03G006670.1mRNA