ClCG03G006550 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G006550
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionBEST Arabidopsis thaliana protein match is: Galact s in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
LocationCG_Chr03: 7337700 .. 7337993 (-)
RNA-Seq ExpressionClCG03G006550
SyntenyClCG03G006550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGCCACATCTCGATTGGCCAGGTTTATCAGCGAAGCTTGCCCTCCCCAAGTCGTCTCTGTCATGAGGCGCAGAAGCCCCAAAGTTCTAGACACCATTAACGAAGAAGACCAAAGAGAAGCCCTAGCTTCCTCTTCCTCCTTGAAGATCGACAAATTCTCTGTTTCTTCACCGCCTTCCCCCATGGCTGCGTCACCGACTTCACCTGCTTCTTCCACCGCCGTTAATTCCAAATACTTTCTCGATCAGGTCCCTATCCCCTTGAGGCCTTTCTCCATTTTCGAACACTGA

mRNA sequence

ATGACAGCCACATCTCGATTGGCCAGGTTTATCAGCGAAGCTTGCCCTCCCCAAGTCGTCTCTGTCATGAGGCGCAGAAGCCCCAAAGTTCTAGACACCATTAACGAAGAAGACCAAAGAGAAGCCCTAGCTTCCTCTTCCTCCTTGAAGATCGACAAATTCTCTGTTTCTTCACCGCCTTCCCCCATGGCTGCGTCACCGACTTCACCTGCTTCTTCCACCGCCGTTAATTCCAAATACTTTCTCGATCAGGTCCCTATCCCCTTGAGGCCTTTCTCCATTTTCGAACACTGA

Coding sequence (CDS)

ATGACAGCCACATCTCGATTGGCCAGGTTTATCAGCGAAGCTTGCCCTCCCCAAGTCGTCTCTGTCATGAGGCGCAGAAGCCCCAAAGTTCTAGACACCATTAACGAAGAAGACCAAAGAGAAGCCCTAGCTTCCTCTTCCTCCTTGAAGATCGACAAATTCTCTGTTTCTTCACCGCCTTCCCCCATGGCTGCGTCACCGACTTCACCTGCTTCTTCCACCGCCGTTAATTCCAAATACTTTCTCGATCAGGTCCCTATCCCCTTGAGGCCTTTCTCCATTTTCGAACACTGA

Protein sequence

MTATSRLARFISEACPPQVVSVMRRRSPKVLDTINEEDQREALASSSSLKIDKFSVSSPPSPMAASPTSPASSTAVNSKYFLDQVPIPLRPFSIFEH
Homology
BLAST of ClCG03G006550 vs. NCBI nr
Match: KAA0054015.1 (hypothetical protein E6C27_scaffold318G00710 [Cucumis melo var. makuwa] >TYK20701.1 hypothetical protein E5676_scaffold480G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 1.6e-32
Identity = 81/97 (83.51%), Postives = 85/97 (87.63%), Query Frame = 0

Query: 1  MTATSRLARFISEACPPQVVSVMRRRSPKVLDTINEEDQREALASSSSLKIDKFSVSSPP 60
          M ATSRLARFISEACPPQ VSVMRRRSPKVLDTINEEDQRE+LASSSS KIDKFSVSSPP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQRESLASSSSFKIDKFSVSSPP 60

Query: 61 SPMAASPTSPASSTAVNSKYFLDQVPIPLRPFSIFEH 98
               SP S A++ AVNSKYFLDQVP+PL PFSIFEH
Sbjct: 61 -----SPASSAAAAAVNSKYFLDQVPVPLGPFSIFEH 92

BLAST of ClCG03G006550 vs. NCBI nr
Match: KGN65872.1 (hypothetical protein Csa_023250 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 8.5e-31
Identity = 77/97 (79.38%), Postives = 82/97 (84.54%), Query Frame = 0

Query: 1  MTATSRLARFISEACPPQVVSVMRRRSPKVLDTINEEDQREALASSSSLKIDKFSVSSPP 60
          M ATSRLARFISEACPPQ VSVMRRRSP+VLDTINEEDQREAL SSSS KIDKFSV SPP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALVSSSSFKIDKFSVPSPP 60

Query: 61 SPMAASPTSPASSTAVNSKYFLDQVPIPLRPFSIFEH 98
          SP        +S+ A+NSKYFLDQVP+PL PFSIFEH
Sbjct: 61 SP-------DSSAAAINSKYFLDQVPVPLGPFSIFEH 90

BLAST of ClCG03G006550 vs. NCBI nr
Match: KAG7019500.1 (hypothetical protein SDJN02_18461, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 74/88 (84.09%), Postives = 78/88 (88.64%), Query Frame = 0

Query: 1  MTATSRLARFISEACPPQVVSVMRRRSPKVLDTINEEDQREALASSSSLKIDKFSVSSPP 60
          M ATSRLARFISEACPPQ VSVMRRRSPKVLDTINEED REAL+SSSSLKIDKFSVSS P
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60

Query: 61 SPMAASPTSPASSTAVNSKYFLDQVPIP 89
          S MAASP SPA+S AV+SKYFL+Q   P
Sbjct: 61 STMAASPPSPATSAAVSSKYFLNQFQWP 88

BLAST of ClCG03G006550 vs. NCBI nr
Match: KAG6583880.1 (hypothetical protein SDJN03_19812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.9 bits (294), Expect = 5.0e-23
Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0

Query: 1  MTATSRLARFISEACPPQVVSVMRRRSPKVLDTINEEDQREALASSSSLKIDKFSVSSPP 60
          M ATSRLARFISEACPPQ VSVMRRRSPKVLDTINEED REAL+SSSSLKIDKFSVSS P
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60

Query: 61 SPMAASPTSPASSTA 76
          S MAASP SPA+S A
Sbjct: 61 STMAASPPSPATSAA 75

BLAST of ClCG03G006550 vs. NCBI nr
Match: KAF7842889.1 (uncharacterized protein G2W53_005187 [Senna tora])

HSP 1 Score: 80.5 bits (197), Expect = 8.9e-12
Identity = 54/101 (53.47%), Postives = 67/101 (66.34%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQVVSVMRRRSPKVLDTINEEDQREALA---SSSSLKIDKFSVSSP 62
          A SR+ARFI E  PPQ V+VMR R+ K+LDTI EEDQRE  +   SSSS K    S SSP
Sbjct: 2  ANSRIARFIMEVAPPQYVTVMRHRTSKMLDTITEEDQREISSSNNSSSSPKGSSSSSSSP 61

Query: 63 PSPMAASPTSPASSTAV---NSKYFLDQVPIPLRPFSIFEH 98
           SP+++SP++ ASS ++   NSKYFL +V    R  SI  H
Sbjct: 62 LSPLSSSPSASASSASIPNGNSKYFLKEVH---RSLSILNH 99

BLAST of ClCG03G006550 vs. ExPASy TrEMBL
Match: A0A5A7UJX7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00970 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.5e-33
Identity = 81/97 (83.51%), Postives = 85/97 (87.63%), Query Frame = 0

Query: 1  MTATSRLARFISEACPPQVVSVMRRRSPKVLDTINEEDQREALASSSSLKIDKFSVSSPP 60
          M ATSRLARFISEACPPQ VSVMRRRSPKVLDTINEEDQRE+LASSSS KIDKFSVSSPP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQRESLASSSSFKIDKFSVSSPP 60

Query: 61 SPMAASPTSPASSTAVNSKYFLDQVPIPLRPFSIFEH 98
               SP S A++ AVNSKYFLDQVP+PL PFSIFEH
Sbjct: 61 -----SPASSAAAAAVNSKYFLDQVPVPLGPFSIFEH 92

BLAST of ClCG03G006550 vs. ExPASy TrEMBL
Match: A0A0A0LYE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534780 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.1e-31
Identity = 77/97 (79.38%), Postives = 82/97 (84.54%), Query Frame = 0

Query: 1  MTATSRLARFISEACPPQVVSVMRRRSPKVLDTINEEDQREALASSSSLKIDKFSVSSPP 60
          M ATSRLARFISEACPPQ VSVMRRRSP+VLDTINEEDQREAL SSSS KIDKFSV SPP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALVSSSSFKIDKFSVPSPP 60

Query: 61 SPMAASPTSPASSTAVNSKYFLDQVPIPLRPFSIFEH 98
          SP        +S+ A+NSKYFLDQVP+PL PFSIFEH
Sbjct: 61 SP-------DSSAAAINSKYFLDQVPVPLGPFSIFEH 90

BLAST of ClCG03G006550 vs. ExPASy TrEMBL
Match: A0A314XQS6 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_10926 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.2e-11
Identity = 54/103 (52.43%), Postives = 64/103 (62.14%), Query Frame = 0

Query: 1  MTATSRLARFISEACPPQVVSVMRRRSPKVLDTINEEDQ------REALASSSSLKIDKF 60
          M A SRLARFI+E  PPQ VSVMR R+ KVLDTINEE++       ++L SSSS K    
Sbjct: 1  MMANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSNDSLISSSSFKGCAC 60

Query: 61 SVSSPPSPMAASPTSPASSTAVNSKYFLDQVPIPLRPFSIFEH 98
          S SSPPS   AS  S A++    SKYFL +V    R FS+  H
Sbjct: 61 STSSPPS--FASAASGAAAAGTESKYFLKEVH---RAFSMLSH 98

BLAST of ClCG03G006550 vs. ExPASy TrEMBL
Match: A0A5E4FYK5 (PREDICTED: galactosyltransferase family OS=Prunus dulcis OX=3755 GN=ALMOND_2B011231 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.9e-10
Identity = 52/101 (51.49%), Postives = 63/101 (62.38%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQVVSVMRRRSPKVLDTINEEDQ------REALASSSSLKIDKFSV 62
          A SRLARFI+E  PPQ VSVMR R+ KVLDTINEE++       ++L SSSS K    S 
Sbjct: 2  ANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSNDSLISSSSSKGCACST 61

Query: 63 SSPPSPMAASPTSPASSTAVNSKYFLDQVPIPLRPFSIFEH 98
           SPPS   AS  S A++    S+YFL +V    R FS+F H
Sbjct: 62 PSPPS--FASAASGAAAAGTESRYFLKEVH---RAFSMFGH 97

BLAST of ClCG03G006550 vs. ExPASy TrEMBL
Match: M5WKN5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G084800 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 52/101 (51.49%), Postives = 62/101 (61.39%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQVVSVMRRRSPKVLDTINEEDQ------REALASSSSLKIDKFSV 62
          A SRLARFI+E  PPQ VSVMR R+ KVLDTI EE++       ++L SSSS K    S 
Sbjct: 2  ANSRLARFITEVAPPQFVSVMRHRTSKVLDTIKEEEREYANTSNDSLISSSSSKGCACST 61

Query: 63 SSPPSPMAASPTSPASSTAVNSKYFLDQVPIPLRPFSIFEH 98
           SPPS   AS  S A++    SKYFL +V    R FS+F H
Sbjct: 62 PSPPS--FASAASAAAAAGTESKYFLKEVH---RAFSMFGH 97

BLAST of ClCG03G006550 vs. TAIR 10
Match: AT1G30260.1 (BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 5.7e-09
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQVVSVMRRRSPKVLDTINEEDQREALASSSSLKIDKFSVSSP-PS 62
          ATSRLARFI+E  PPQ V+VMRRR+ KVLDTI EE++     S      +   +SSP  S
Sbjct: 2  ATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREVGTDSIFPSSFNSKKISSPFTS 61

Query: 63 PMAASPTSPASSTAVNS 79
          P ++S +S ++S +  S
Sbjct: 62 PYSSSVSSASASASCTS 78

BLAST of ClCG03G006550 vs. TAIR 10
Match: AT4G21060.1 (Galactosyltransferase family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-05
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQVVSVMRRR--SPKVLDTINEEDQRE 42
          ATSRLARF+SE  PPQ V+VMRR   + + LDTI EE+ +E
Sbjct: 2  ATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEENKE 42

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0054015.11.6e-3283.51hypothetical protein E6C27_scaffold318G00710 [Cucumis melo var. makuwa] >TYK2070... [more]
KGN65872.18.5e-3179.38hypothetical protein Csa_023250 [Cucumis sativus][more]
KAG7019500.11.5e-2784.09hypothetical protein SDJN02_18461, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6583880.15.0e-2388.00hypothetical protein SDJN03_19812, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF7842889.18.9e-1253.47uncharacterized protein G2W53_005187 [Senna tora][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UJX77.5e-3383.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LYE64.1e-3179.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534780 PE=4 SV=1[more]
A0A314XQS66.2e-1152.43Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_109... [more]
A0A5E4FYK56.9e-1051.49PREDICTED: galactosyltransferase family OS=Prunus dulcis OX=3755 GN=ALMOND_2B011... [more]
M5WKN51.2e-0951.49Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G084800 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G30260.15.7e-0948.05BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein... [more]
AT4G21060.11.0e-0560.98Galactosyltransferase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..74
NoneNo IPR availablePANTHERPTHR35101:SF12OS02G0162600 PROTEINcoord: 2..96
NoneNo IPR availablePANTHERPTHR35101OS02G0162600 PROTEINcoord: 2..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G006550.1ClCG03G006550.1mRNA