ClCG03G004220 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G004220
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description50S ribosomal protein L7/L12
LocationCG_Chr03: 4562584 .. 4563228 (+)
RNA-Seq ExpressionClCG03G004220
SyntenyClCG03G004220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCTTAGTTTTAAGAATAAGGCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTCCTGCTGTAGCCCTCAATCCTCTCAACATAAATGGATTACATAGAAATTATGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAAGAGGTAGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCTGCTAATTTTGATCCAACACAGCACCGTAGTCCTCCGACTGATCGTGTTTTTAGGCTTGTAGATGAAATATCTGGGCTCACATTAGTTGAAATTTCTGAATTATCTTCCATTTTGAGGAAAAAATTGGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAACCAGGAGCTGCTGGATTGGCTGGAATGGGAATGAAGGCATCATCAGCAACTGCCAAGGAGGAGAAGAAGGCAGAAAAGACTGTTTACGAGTTGAAACTAGAGTCTTACGAAGCATCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGTCTGAAAGAGGCAAAGGATTTAGTGGAGAAAACCCCATCAGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAATTGAAAAGATGAAGGCACTTGGTGCAAAAGTGATCTTGGAATGA

mRNA sequence

ATGCGCTTAGTTTTAAGAATAAGGCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTCCTGCTGTAGCCCTCAATCCTCTCAACATAAATGGATTACATAGAAATTATGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAAGAGGTAGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCTGCTAATTTTGATCCAACACAGCACCGTAGTCCTCCGACTGATCGTGTTTTTAGGCTTGTAGATGAAATATCTGGGCTCACATTAGTTGAAATTTCTGAATTATCTTCCATTTTGAGGAAAAAATTGGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAACCAGGAGCTGCTGGATTGGCTGGAATGGGAATGAAGGCATCATCAGCAACTGCCAAGGAGGAGAAGAAGGCAGAAAAGACTGTTTACGAGTTGAAACTAGAGTCTTACGAAGCATCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGTCTGAAAGAGGCAAAGGATTTAGTGGAGAAAACCCCATCAGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAATTGAAAAGATGAAGGCACTTGGTGCAAAAGTGATCTTGGAATGA

Coding sequence (CDS)

ATGCGCTTAGTTTTAAGAATAAGGCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTCCTGCTGTAGCCCTCAATCCTCTCAACATAAATGGATTACATAGAAATTATGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAAGAGGTAGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCTGCTAATTTTGATCCAACACAGCACCGTAGTCCTCCGACTGATCGTGTTTTTAGGCTTGTAGATGAAATATCTGGGCTCACATTAGTTGAAATTTCTGAATTATCTTCCATTTTGAGGAAAAAATTGGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAACCAGGAGCTGCTGGATTGGCTGGAATGGGAATGAAGGCATCATCAGCAACTGCCAAGGAGGAGAAGAAGGCAGAAAAGACTGTTTACGAGTTGAAACTAGAGTCTTACGAAGCATCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGTCTGAAAGAGGCAAAGGATTTAGTGGAGAAAACCCCATCAGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAATTGAAAAGATGAAGGCACTTGGTGCAAAAGTGATCTTGGAATGA

Protein sequence

MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE
Homology
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BLAST of ClCG03G004220 vs. NCBI nr
Match: XP_038876937.1 (50S ribosomal protein L7/L12 [Benincasa hispida])

HSP 1 Score: 382.5 bits (981), Expect = 2.4e-102
Identity = 207/215 (96.28%), Postives = 212/215 (98.60%), Query Frame = 0 

Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           M LVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIE+EEEE+EIDQRRLPA
Sbjct: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEDEEEELEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVE++ELSSILRKKLGMTDMPVVGVMKPG
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGMGMKA-SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKD 180
           AAGLAGM MKA SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKD
Sbjct: 121 AAGLAGMAMKASSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKD 180

Query: 181 LVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           LVEKTPSVLKKGLSKEEGE+IIEKMKALGAKVILE
Sbjct: 181 LVEKTPSVLKKGLSKEEGEKIIEKMKALGAKVILE 215

[Close]
BLAST of ClCG03G004220 vs. NCBI nr
Match: XP_022137691.1 (uncharacterized protein LOC111009067 [Momordica charantia])

HSP 1 Score: 373.2 bits (957), Expect = 1.5e-99
Identity = 201/214 (93.93%), Postives = 208/214 (97.20%), Query Frame = 0 

Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           M LVLRIRHLLPNVFANTIRSPAVALNPLN NGLHRNYAQPARIEEEE+EVEIDQRRLPA
Sbjct: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNSNGLHRNYAQPARIEEEEDEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVE++ELS+ILRKKLGMTDMPVVGVMKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAELSTILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGL GM MKAS+A AKEEKK EKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLGGMAMKASTA-AKEEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]
BLAST of ClCG03G004220 vs. NCBI nr
Match: KAG6584188.1 (50S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019780.1 50S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365.9 bits (938), Expect = 2.3e-97
Identity = 197/214 (92.06%), Postives = 206/214 (96.26%), Query Frame = 0 

Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           MRLVLRI HLLPNV ANT RSPA+ALNPLN+NGLHRN++QPARI EEEEEVEIDQRRLPA
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFSQPARI-EEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVE++ELSSILRKKLGMTDMPVVGVMK G
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKAG 120

Query: 121 AAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGLAGM  KASSATAKEEKK EKTV+ELKLESYEA+AKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]
BLAST of ClCG03G004220 vs. NCBI nr
Match: XP_023519323.1 (uncharacterized protein LOC111782753 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362.5 bits (929), Expect = 2.6e-96
Identity = 196/214 (91.59%), Postives = 204/214 (95.33%), Query Frame = 0 

Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           MRLVLRI HLLPNV ANT RSPA+A NPLN+NGLHRN+AQ ARI EEEEEVEIDQRRLPA
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALAFNPLNVNGLHRNFAQSARI-EEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVE++ELSSILRKKLGMTDMPVVGVMK G
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKAG 120

Query: 121 AAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGLAGM  KASSATAKEEKK EKTV+ELKLESYEA+AKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]
BLAST of ClCG03G004220 vs. NCBI nr
Match: XP_022954769.1 (uncharacterized protein LOC111456924 [Cucurbita moschata] >XP_022954770.1 uncharacterized protein LOC111456924 [Cucurbita moschata])

HSP 1 Score: 360.9 bits (925), Expect = 7.5e-96
Identity = 194/214 (90.65%), Postives = 201/214 (93.93%), Query Frame = 0 

Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           M LVLR RHLLP VF N +RSP  A    N+NGLHRNYAQPARIEEEEEEVEIDQRRLPA
Sbjct: 1   MHLVLRTRHLLPGVFTNIVRSPVAA---FNLNGLHRNYAQPARIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVE++ELSSILRKKLGMTDMPVVGVMKPG
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGLAGMGMKAS+A AKEEKK EKTVYELKLESYEA+AKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211

[Close]
BLAST of ClCG03G004220 vs. ExPASy Swiss-Prot
Match: Q9USJ9 (54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl12 PE=3 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 7.7e-19
Identity = 58/136 (42.65%), Postives = 84/136 (61.76%), Query Frame = 0 

Query: 79  RVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATAKE 138
           ++  +VD+IS L+L+E SEL   L++KL + ++  +  + P  A  A      S   A E
Sbjct: 43  QIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAA-----PSEEKAPE 102

Query: 139 EKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGE 198
           EKK EKT + LKLES++A +K K+IKEV+S   L L +AK  VE  P VLK+ + KE+ E
Sbjct: 103 EKKEEKTTWNLKLESFDAGSKAKVIKEVKSLLGLSLVDAKKFVESAPKVLKENILKEDAE 162

Query: 199 QIIEKMKALGAKVILE 215
            I  K++ L  KV+LE
Sbjct: 163 AIKSKLEKLSCKVVLE 173

[Close]
BLAST of ClCG03G004220 vs. ExPASy Swiss-Prot
Match: P41189 (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.2e-17
Identity = 55/131 (41.98%), Postives = 83/131 (63.36%), Query Frame = 0 

Query: 83  LVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATAKEEKKA 142
           +V+++S LTL++ +ELS  L ++ G++    V V+             AS+A       A
Sbjct: 7   IVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVV-------------ASAAGESAAAVA 66

Query: 143 EKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQIIE 202
           EKT +E+ LE ++A  KI +IKEVR+ T+LGLKEAKD VE  P  LK G+SK+E E++ +
Sbjct: 67  EKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKK 124

Query: 203 KMKALGAKVIL 214
           K++A GA +IL
Sbjct: 127 KLEAAGATIIL 124

[Close]
BLAST of ClCG03G004220 vs. ExPASy Swiss-Prot
Match: A5ELN8 (50S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) OX=288000 GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-15
Identity = 55/133 (41.35%), Postives = 84/133 (63.16%), Query Frame = 0 

Query: 82  RLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATAKEEKK 141
           ++VD++S LT++E +EL+ +L +K G++    V V  PGA G         +A A  E+K
Sbjct: 6   KIVDDLSALTVLEAAELAKLLEEKWGVSAAAAVAVAAPGAGG---------AAAAPAEEK 65

Query: 142 AEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQII 201
            E TV    + +     KI++IKEVR+ T LGLKEAKDLVE  P  +K+G++K+E E+I 
Sbjct: 66  TEFTV----VLASAGDKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKDEAEKIK 125

Query: 202 EKMKALGAKVILE 215
            +++  GAKV L+
Sbjct: 126 GQLEKAGAKVELK 125

[Close]
BLAST of ClCG03G004220 vs. ExPASy Swiss-Prot
Match: A4YSI0 (50S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain ORS 278) OX=114615 GN=rplL PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-15
Identity = 55/133 (41.35%), Postives = 83/133 (62.41%), Query Frame = 0 

Query: 82  RLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATAKEEKK 141
           ++VD++S LT++E +EL+ +L +K G++    V V  PG  G         +A A  E+K
Sbjct: 6   KIVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAPGGGG---------AAAAPAEEK 65

Query: 142 AEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQII 201
            E TV    + +     KI++IKEVR+ T LGLKEAKDLVE  P  +K+G++KEE E+I 
Sbjct: 66  TEFTV----VLASAGDKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKEEAEKIK 125

Query: 202 EKMKALGAKVILE 215
            +++  GAKV L+
Sbjct: 126 GQLEKAGAKVELK 125

[Close]
BLAST of ClCG03G004220 vs. ExPASy Swiss-Prot
Match: Q9L5W4 (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494 GN=rplL PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.0e-15
Identity = 52/131 (39.69%), Postives = 81/131 (61.83%), Query Frame = 0 

Query: 83  LVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATAKEEKKA 142
           +V+++S LTL++ +ELS  L ++ G++    V  + P              A   +   A
Sbjct: 7   IVEKLSSLTLIQAAELSKRLEEEWGVSASAPVAAVAP--------------AVXXDVAVA 66

Query: 143 EKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQIIE 202
           EKT +E+ LES++A +KI +IKEVRS TDLGLKEAK+LVE     L+ G+SK+E  ++ +
Sbjct: 67  EKTEFEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELKK 123

Query: 203 KMKALGAKVIL 214
           K++A GA + L
Sbjct: 127 KLEAAGATISL 123

[Close]
BLAST of ClCG03G004220 vs. ExPASy TrEMBL
Match: A0A6J1C7E3 (uncharacterized protein LOC111009067 OS=Momordica charantia OX=3673 GN=LOC111009067 PE=3 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.1e-100
Identity = 201/214 (93.93%), Postives = 208/214 (97.20%), Query Frame = 0 

Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           M LVLRIRHLLPNVFANTIRSPAVALNPLN NGLHRNYAQPARIEEEE+EVEIDQRRLPA
Sbjct: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNSNGLHRNYAQPARIEEEEDEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVE++ELS+ILRKKLGMTDMPVVGVMKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAELSTILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGL GM MKAS+A AKEEKK EKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLGGMAMKASTA-AKEEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]
BLAST of ClCG03G004220 vs. ExPASy TrEMBL
Match: A0A6J1GU05 (uncharacterized protein LOC111456924 OS=Cucurbita moschata OX=3662 GN=LOC111456924 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.6e-96
Identity = 194/214 (90.65%), Postives = 201/214 (93.93%), Query Frame = 0 

Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           M LVLR RHLLP VF N +RSP  A    N+NGLHRNYAQPARIEEEEEEVEIDQRRLPA
Sbjct: 1   MHLVLRTRHLLPGVFTNIVRSPVAA---FNLNGLHRNYAQPARIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVE++ELSSILRKKLGMTDMPVVGVMKPG
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGLAGMGMKAS+A AKEEKK EKTVYELKLESYEA+AKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211

[Close]
BLAST of ClCG03G004220 vs. ExPASy TrEMBL
Match: A0A6J1KHE7 (uncharacterized protein LOC111495277 OS=Cucurbita maxima OX=3661 GN=LOC111495277 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.2e-96
Identity = 195/214 (91.12%), Postives = 204/214 (95.33%), Query Frame = 0 

Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           MRLVLRI HLLPNV ANT RSPA+ALNPLN+NGLHRN+AQPARI  EEEEVEIDQRRLPA
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFAQPARI--EEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYD ANFDPTQHRSPPTDRVFRLVDEISGLTLVE++ELSSILRKKLG+TDMPVVGVMK G
Sbjct: 61  DYDLANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGLTDMPVVGVMKAG 120

Query: 121 AAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGLAGM  KASSATAKEEKK EKTV+ELKLESYEA+AKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212

[Close]
BLAST of ClCG03G004220 vs. ExPASy TrEMBL
Match: A0A6J1E822 (uncharacterized protein LOC111431646 OS=Cucurbita moschata OX=3662 GN=LOC111431646 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 8.1e-96
Identity = 194/214 (90.65%), Postives = 205/214 (95.79%), Query Frame = 0 

Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           MRLVLRI HLLPNV ANT RSPA+ALNPLN+NGLHR+++QPA I EEEEEVEIDQRRLPA
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWI-EEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVE++ELSSILRK+LGMTDMPVVGVMK G
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAG 120

Query: 121 AAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGLAGM  KASSATAKEEKK EKTV+ELKLESYEA+AKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]
BLAST of ClCG03G004220 vs. ExPASy TrEMBL
Match: A0A5D3BKQ0 (50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005140 PE=3 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.4e-95
Identity = 193/214 (90.19%), Postives = 200/214 (93.46%), Query Frame = 0 

Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           MRLV RI HLLPNVFANTIRS  VALNPLN NG+HRNYAQP+RIEEEEEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGVHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVE++ELSSIL KKLGMT+MPV G MKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAELSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           A GLAGM  K SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKVSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           V+K PSVLKKGLSKEEGEQIIEKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIIEKMKALGAKVILE 214

[Close]
BLAST of ClCG03G004220 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 247.7 bits (631), Expect = 8.6e-66
Identity = 143/217 (65.90%), Postives = 168/217 (77.42%), Query Frame = 0 

Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           M LVLR R  L    +         L+ L+  G +R+Y QPA+IE+EEEE E DQR+LP 
Sbjct: 1   MSLVLRFRQHLSQTSSR--------LSLLSRIGGYRSYTQPAKIEDEEEE-EFDQRKLPT 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPA FDPT+HRSPPTDRVFRLVDEIS LTL+EISEL SI+ KK GMT++P V VMKPG
Sbjct: 61  DYDPATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPG 120

Query: 121 A---AGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEA 180
           A    G+ G G   S +   EE K EKTV+E+KLES+EASAKIKIIKE+RSFTDLGLKEA
Sbjct: 121 AGGGVGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEA 180

Query: 181 KDLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           K LVEKTP++LK GLSKEEGE+I+EK+KALGAKV+LE
Sbjct: 181 KALVEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of ClCG03G004220 vs. TAIR 10
Match: AT1G70190.2 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 247.7 bits (631), Expect = 8.6e-66
Identity = 143/217 (65.90%), Postives = 168/217 (77.42%), Query Frame = 0 

Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           M LVLR R  L    +         L+ L+  G +R+Y QPA+IE+EEEE E DQR+LP 
Sbjct: 1   MSLVLRFRQHLSQTSSR--------LSLLSRIGGYRSYTQPAKIEDEEEE-EFDQRKLPT 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPA FDPT+HRSPPTDRVFRLVDEIS LTL+EISEL SI+ KK GMT++P V VMKPG
Sbjct: 61  DYDPATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPG 120

Query: 121 A---AGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEA 180
           A    G+ G G   S +   EE K EKTV+E+KLES+EASAKIKIIKE+RSFTDLGLKEA
Sbjct: 121 AGGGVGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEA 180

Query: 181 KDLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           K LVEKTP++LK GLSKEEGE+I+EK+KALGAKV+LE
Sbjct: 181 KALVEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of ClCG03G004220 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 136.0 bits (341), Expect = 3.7e-32
Identity = 74/145 (51.03%), Postives = 109/145 (75.17%), Query Frame = 0 

Query: 72  HRSPPT--DRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGM 131
           + SP T  + V ++V+E+S LTL+E  +L+ ILR+KL ++++PV+  M PG +       
Sbjct: 35  YSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGAS 94

Query: 132 KASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLK 191
           K++    KE+KK  KT +++ L++Y+A +KIK+IKEVR+ T LGLKEAKDLVEK P++LK
Sbjct: 95  KSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLK 154

Query: 192 KGLSKEEGEQIIEKMKALGAKVILE 215
           KG+SKEE E+IIEK+KA+GAKV +E
Sbjct: 155 KGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]
BLAST of ClCG03G004220 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-23
Identity = 62/138 (44.93%), Postives = 95/138 (68.84%), Query Frame = 0 

Query: 77  TDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATA 136
           T ++ R+ D++  L  +E+ + S +   K+G+         + G+A +A  G    ++ +
Sbjct: 39  TKKLERIADDLLKLNRIELYDYSLLFSHKIGLN--------RYGSA-VAVTGSVGDASAS 98

Query: 137 KEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEE 196
            E K AEKT +++KLE +EA++KIK+IKE+R+FTDLGLKEAK LVEK P ++K GL+KEE
Sbjct: 99  TETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEE 158

Query: 197 GEQIIEKMKALGAKVILE 215
            E+I+EK+KA+GA V LE
Sbjct: 159 AEKIMEKLKAVGAIVALE 167

[Close]
BLAST of ClCG03G004220 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 105.9 bits (263), Expect = 4.1e-23
Identity = 59/151 (39.07%), Postives = 93/151 (61.59%), Query Frame = 0 

Query: 64  PANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAG 123
           P+ +DP   R  P+ ++  L + I+ L+  E  ++   L + L +    ++         
Sbjct: 44  PSVYDPYGPRPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMI--------S 103

Query: 124 LAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEK 183
             G+G K  +     E+K EKT +++KLE + AS KIK+IKEVR+FT LGLKEAK+LVEK
Sbjct: 104 SDGIGAKQDTGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEK 163

Query: 184 TPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
            P++LK+G++KEE  +II K+KA+G   ++E
Sbjct: 164 VPAILKQGVTKEEANEIIAKIKAVGGIAVME 186

The following BLAST results are available for this feature:
BLAST of ClCG03G004220 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038876937.12.4e-10296.2850S ribosomal protein L7/L12 [Benincasa hispida][more]
XP_022137691.11.5e-9993.93uncharacterized protein LOC111009067 [Momordica charantia][more]
KAG6584188.12.3e-9792.0650S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. sororia] >K... [more]
XP_023519323.12.6e-9691.59uncharacterized protein LOC111782753 [Cucurbita pepo subsp. pepo][more]
XP_022954769.17.5e-9690.65uncharacterized protein LOC111456924 [Cucurbita moschata] >XP_022954770.1 unchar... [more]
BLAST of ClCG03G004220 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9USJ97.7e-1942.6554S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
P411897.2e-1741.9850S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=... [more]
A5ELN81.4e-1541.3550S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182... [more]
A4YSI01.8e-1541.3550S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain ORS 278) OX=114615 GN... [more]
Q9L5W44.0e-1539.6950S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494... [more]
BLAST of ClCG03G004220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C7E37.1e-10093.93uncharacterized protein LOC111009067 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A6J1GU053.6e-9690.65uncharacterized protein LOC111456924 OS=Cucurbita moschata OX=3662 GN=LOC1114569... [more]
A0A6J1KHE76.2e-9691.12uncharacterized protein LOC111495277 OS=Cucurbita maxima OX=3661 GN=LOC111495277... [more]
A0A6J1E8228.1e-9690.65uncharacterized protein LOC111431646 OS=Cucurbita moschata OX=3662 GN=LOC1114316... [more]
A0A5D3BKQ02.4e-9590.1950S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
BLAST of ClCG03G004220 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G70190.18.6e-6665.90Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a... [more]
AT1G70190.28.6e-6665.90Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a... [more]
AT4G36420.13.7e-3251.03Ribosomal protein L12 family protein [more]
AT4G37660.13.1e-2344.93Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT3G06040.14.1e-2339.07Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 137..157
IPR036235Ribosomal protein L7/L12, oligomerisation domain superfamilyGENE3D1.20.5.710Single helix bincoord: 81..142
e-value: 7.3E-7
score: 31.1
IPR036235Ribosomal protein L7/L12, oligomerisation domain superfamilySUPERFAMILY48300Ribosomal protein L7/12, oligomerisation (N-terminal) domaincoord: 82..123
IPR008932Ribosomal protein L7/L12, oligomerisationPFAMPF16320Ribosomal_L12_Ncoord: 83..123
e-value: 9.1E-10
score: 38.1
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 148..213
e-value: 1.2E-20
score: 73.6
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 143..213
e-value: 8.2E-21
score: 75.9
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 147..213
IPR015608Putative ribosomal protein L7/L12, plantsPANTHERPTHR45987:SF1F20P5.9 PROTEINcoord: 28..214
IPR000206Ribosomal protein L7/L12PANTHERPTHR4598739S RIBOSOMAL PROTEIN L12coord: 28..214
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 77..214
score: 17.339497
IPR000206Ribosomal protein L7/L12CDDcd00387Ribosomal_L7_L12coord: 79..213
e-value: 2.86806E-46
score: 147.302

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G004220.1ClCG03G004220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome