ClCG03G003200 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G003200
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr03: 3703982 .. 3705140 (+)
RNA-Seq ExpressionClCG03G003200
SyntenyClCG03G003200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGATTATCCTGAGCAAAATAAGTTGTGCCTTTCCGAAGTAGATTCAGACTCTCATCAAGATTTGAAGTCAAATTTGACAGGTTTTTTAATCTTATTCGTGAATCATACAATCACCAACTTTAACATTAGTGTTTCCTTCCTCCAAAATCAAGTAAATTCAGGCAAGTTAGATCGTGATATAAAGGATATATGTTTGAGGCTTGTATTGGAGATTTTCAATTAGGGATTGATGATTTACGAGAAACTTTTGCATATGTTACTAACAGAAAATAGTATAATTATTGATCATTTACCACTTCTTAATATTGTTGATATGTAAGTGGGTGTGATCAAGATTTTGATGGACATCCAGTGCCTCGTTATAAAACTTCAAGGGCATTCTTGGATCTTGGATTGGCAATGACGAATCTCATGTTATGTAATCGTGTAGAGGCATGTATACCAACCTCTTTTTGGTTCAACCATATGTTGTTACCAATAAATTTATATAAATGAAATATAAATTGTGTTGTATGAACCTATGTAGTTTAGTTGAACTAAAAAAGTCAATTAAATGAATGCGTTCTTCAAAAGGTATGTGGTTCGAATCTCCCTACCTCTACCATATTTAAAAAGTTGGACTAATATATATATATATATAACAGTATTGCGTATATATTTGTTAAAAAAAATTCATTTTCTTTTTAAAGTTTATTCGTGATACGCTCAATTGTGATCATTATTTCCATCATACTTAATTAAGTCATTCAAGGAACATCTTCAGCATTATTTGAGTTAATTAACTCAAGGGTAGAATCAAACCGAATATAACTCAATTGGTATACAAATGTGTTAGTAACCACGAAATATGTGATTCGAATCTTCTTGTACTAAAGAAACCTTATATTAAAAATGCAAATGCAGGAACATTTAGGTTAAAATAACAATTATTTTTTTTTTCAAAAGGTTAGGAAGTTGAATCCGAAGTGAATCGAACACACAATCTTCTGATTTGGAGTTAGACGCGCTACCATTGCGCCACGGATCCAATTGGGTGTCTAATTGAAATTTGTTCAATTATTTTAGCCCACTTGGAGTGGAGAGGGAGGAGAGAGAGTTCCTTTTTTCAGAATAAGGTGTGATTTTTTTTTCTTTTTTCTATTATTAGTTTTTAA

mRNA sequence

ATGATTGATTATCCTGAGCAAAATAAGTTGTGCCTTTCCGAAGTAGATTCAGACTCTCATCAAGATTTGAAGTCAAATTTGACAGGTTTTTTAATCTTATTCGTGAATCATACAATCACCAACTTTAACATTAGTGTTTCCTTCCTCCAAAATCAAGTAAATTCAGGCAAGTTAGATCGTGATATAAAGGATATATGTTTGAGGCTTGGATTGATGATTTACGAGAAACTTTTGCATATGTTACTAACAGAAAATAGTATAATTATTGATCATTTACCACTTCTTAATATTGTTGATATTGGGTGTGATCAAGATTTTGATGGACATCCAGTGCCTCGTTATAAAACTTCAAGGGCATTCTTGGATCTTGGATTGGCAATGACGAATCTCATTTTTTAA

Coding sequence (CDS)

ATGATTGATTATCCTGAGCAAAATAAGTTGTGCCTTTCCGAAGTAGATTCAGACTCTCATCAAGATTTGAAGTCAAATTTGACAGGTTTTTTAATCTTATTCGTGAATCATACAATCACCAACTTTAACATTAGTGTTTCCTTCCTCCAAAATCAAGTAAATTCAGGCAAGTTAGATCGTGATATAAAGGATATATGTTTGAGGCTTGGATTGATGATTTACGAGAAACTTTTGCATATGTTACTAACAGAAAATAGTATAATTATTGATCATTTACCACTTCTTAATATTGTTGATATTGGGTGTGATCAAGATTTTGATGGACATCCAGTGCCTCGTTATAAAACTTCAAGGGCATTCTTGGATCTTGGATTGGCAATGACGAATCTCATTTTTTAA

Protein sequence

MIDYPEQNKLCLSEVDSDSHQDLKSNLTGFLILFVNHTITNFNISVSFLQNQVNSGKLDRDIKDICLRLGLMIYEKLLHMLLTENSIIIDHLPLLNIVDIGCDQDFDGHPVPRYKTSRAFLDLGLAMTNLIF
Homology
BLAST of ClCG03G003200 vs. NCBI nr
Match: KAG6572380.1 (ATP-dependent zinc metalloprotease FTSH 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-19
Identity = 62/141 (43.97%), Postives = 87/141 (61.70%), Query Frame = 0

Query: 4   YPEQNKLCLSEVDSDSHQDLKSNLTGFLILFVNHTITNFNISVSFLQNQVNSGKLDRDIK 63
           Y E  K+C+ E+DSD  +DLKSNLTGFLI+FVNHTI+NFN ++ FLQ ++ SGKL+ + K
Sbjct: 25  YDELYKVCIPEIDSDPREDLKSNLTGFLIIFVNHTISNFNDNIVFLQREIQSGKLNAETK 84

Query: 64  ---DICLRLGLMIYEKL---LHMLLTENSIIIDHLPLLNIVD--IGCDQDFDGHPVP--- 123
              + CL+   M Y  L   +H+LLT+    +  LP +++      C  DFDG P+P   
Sbjct: 85  LMYNTCLKAFGMGYSNLQESMHILLTQPGTNVYELPTMDVDKRISTCVDDFDGEPIPPEW 144

Query: 124 --RYKTSRAFLDLGLAMTNLI 132
             RY TS   + L +  +NLI
Sbjct: 145 QSRYNTSWNLVALMVETSNLI 165

BLAST of ClCG03G003200 vs. NCBI nr
Match: XP_023511468.1 (uncharacterized protein LOC111776286 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.1 bits (253), Expect = 3.9e-18
Identity = 63/142 (44.37%), Postives = 85/142 (59.86%), Query Frame = 0

Query: 4   YPEQNKLCLSEVDSDSHQDLKSNLTGFLILFVNHTITNFNISVSFLQNQVNSGKLDRDIK 63
           Y E  KLC+ E+D D  +DLKSNLTGFL +FVNHTI NFN ++ FLQ ++ SGKLD + K
Sbjct: 22  YNELYKLCIPEIDLDPREDLKSNLTGFLTIFVNHTINNFNDNLIFLQREIKSGKLDAETK 81

Query: 64  ---DICLRLGLMIYEKL---LHMLLTENSIIIDHLPLLNI---VDIGCDQDFDGHPVP-- 123
              D C     M Y KL   +H+LLT+    +  LP +++   + + C  DF+  P+P  
Sbjct: 82  LMYDKCSESFGMGYTKLQESMHILLTQPGTNVYDLPTMSVDKRISV-CFDDFEDDPIPPE 141

Query: 124 ---RYKTSRAFLDLGLAMTNLI 132
              RYKTS   + L L  +NLI
Sbjct: 142 WQSRYKTSWNLVSLILGTSNLI 162

BLAST of ClCG03G003200 vs. NCBI nr
Match: KAG6572152.1 (Expansin-like A2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.9 bits (250), Expect = 8.6e-18
Identity = 61/136 (44.85%), Postives = 82/136 (60.29%), Query Frame = 0

Query: 9   KLCLSEVDSDSHQDLKSNLTGFLILFVNHTITNFNISVSFLQNQVNSGKLD---RDIKDI 68
           KLC+ EVDS+  +DLKSNLTG LI+FVNHTI+NF  +V FLQ ++ SGKL+   +++ D 
Sbjct: 170 KLCIPEVDSEPREDLKSNLTGILIIFVNHTISNFKDNVMFLQREIKSGKLNGKTKEMYDT 229

Query: 69  CL---RLGLMIYEKLLHMLLTENSIIIDHLPLLNIVD--IGCDQDFDGHPVP-----RYK 128
           CL     G    ++ +H+LLTE    I  LP L++      C  DF+G P P     RY 
Sbjct: 230 CLENFERGTTDLQQSMHVLLTETGKDIYGLPALSVASYVTECVDDFEGVPKPPEWQSRYN 289

Query: 129 TSRAFLDLGLAMTNLI 132
           TS   L+L L   NL+
Sbjct: 290 TSNKLLELILGTCNLM 305

BLAST of ClCG03G003200 vs. NCBI nr
Match: KAA0055284.1 (putative invertase inhibitor [Cucumis melo var. makuwa] >TYJ99207.1 putative invertase inhibitor [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.9e-17
Identity = 57/139 (41.01%), Postives = 84/139 (60.43%), Query Frame = 0

Query: 6   EQNKLCLSEVDSDSHQDLKSNLTGFLILFVNHTITNFNISVSFLQNQVNSGKLDRDIKDI 65
           E   LCLS++ S+   DLKSNLTG L++FVN +I+NF   +SFL+ ++NS K+ RD KD+
Sbjct: 41  ELKNLCLSQISSEPRNDLKSNLTGLLMIFVNQSISNFKNDISFLEKEINSNKISRDTKDM 100

Query: 66  ---CL---RLGLMIYEKLLHMLLTENSIIIDHLPLLNI--VDIGCDQDFDGHPVP----- 125
              CL   ++G +   + + +L T+     + LP+ N+  + + C  DF+G PVP     
Sbjct: 101 LEDCLQNFQIGSVNLRETMEILQTKTGYDAEQLPVGNVGNLAVECFDDFEGTPVPPEWQS 160

Query: 126 RYKTSRAFLDLGLAMTNLI 132
           RY  S A L L +AM NLI
Sbjct: 161 RYNASFALLKLSMAMINLI 179

BLAST of ClCG03G003200 vs. NCBI nr
Match: KAG6572388.1 (hypothetical protein SDJN03_29116, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-15
Identity = 60/140 (42.86%), Postives = 82/140 (58.57%), Query Frame = 0

Query: 6   EQNKLCLSEVDSDSHQDLKSNLTGFLILFVNHTITNFNISVSFLQNQVNSGKLDRDIK-- 65
           E   LC+SE+DSD  +DLK NLTG L +FVNHTI NFN ++ FLQ ++ S KL+ + K  
Sbjct: 27  ELYNLCISEIDSDPREDLKFNLTGILTIFVNHTINNFNDNLVFLQQEIKSEKLEAETKLM 86

Query: 66  -DICLRLGLMIYEKL---LHMLLTENSIIIDHLPLLNI---VDIGCDQDFDGHPVP---- 125
            D C     M Y KL   +H+LLT+    +  LP +++   + + C  DF+  PVP    
Sbjct: 87  YDKCSESFGMGYTKLQESMHILLTQPGTNVYDLPTMSVDKRISV-CFDDFEDDPVPPEWQ 146

Query: 126 -RYKTSRAFLDLGLAMTNLI 132
            RYKTS   + L L  +NLI
Sbjct: 147 SRYKTSWNLVSLILGTSNLI 165

BLAST of ClCG03G003200 vs. ExPASy TrEMBL
Match: A0A5D3BJB5 (Putative invertase inhibitor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004170 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.3e-18
Identity = 57/139 (41.01%), Postives = 84/139 (60.43%), Query Frame = 0

Query: 6   EQNKLCLSEVDSDSHQDLKSNLTGFLILFVNHTITNFNISVSFLQNQVNSGKLDRDIKDI 65
           E   LCLS++ S+   DLKSNLTG L++FVN +I+NF   +SFL+ ++NS K+ RD KD+
Sbjct: 41  ELKNLCLSQISSEPRNDLKSNLTGLLMIFVNQSISNFKNDISFLEKEINSNKISRDTKDM 100

Query: 66  ---CL---RLGLMIYEKLLHMLLTENSIIIDHLPLLNI--VDIGCDQDFDGHPVP----- 125
              CL   ++G +   + + +L T+     + LP+ N+  + + C  DF+G PVP     
Sbjct: 101 LEDCLQNFQIGSVNLRETMEILQTKTGYDAEQLPVGNVGNLAVECFDDFEGTPVPPEWQS 160

Query: 126 RYKTSRAFLDLGLAMTNLI 132
           RY  S A L L +AM NLI
Sbjct: 161 RYNASFALLKLSMAMINLI 179

BLAST of ClCG03G003200 vs. ExPASy TrEMBL
Match: A0A6J1C7W5 (uncharacterized protein LOC111008804 OS=Momordica charantia OX=3673 GN=LOC111008804 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-08
Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = 0

Query: 9   KLCLSEVDSDSHQDLKSNLTGFLILFVNHTITNFNISVSFLQNQVNSGKLDRDIK---DI 68
           K+C+  +DSD HQDLK NL+G L +F+NH+I N   +  +L  Q+    LD+DI+   ++
Sbjct: 27  KVCIDVIDSDPHQDLKLNLSGLLAIFINHSIDNATDNHLYLMEQLKRSDLDKDIRYTFNV 86

Query: 69  CL---RLGLMIYEKLLHMLLTENSIIIDHLPLLNIVD--IGCDQDFDGHPVP-----RYK 128
           C+     GL I +  L  LL  +   +  L L +  D  + C+ DF+  P P      Y 
Sbjct: 87  CVEQYERGLDILKSSLEALLKNDKDDLG-LILSDAFDKIVACEDDFESTPEPPSWLAHYL 146

Query: 129 TSRAFLDLGLAMTNLI 132
             R  L L +   NLI
Sbjct: 147 PLRKLLALSMGTANLI 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6572380.12.1e-1943.97ATP-dependent zinc metalloprotease FTSH 2, chloroplastic, partial [Cucurbita arg... [more]
XP_023511468.13.9e-1844.37uncharacterized protein LOC111776286 [Cucurbita pepo subsp. pepo][more]
KAG6572152.18.6e-1844.85Expansin-like A2, partial [Cucurbita argyrosperma subsp. sororia][more]
KAA0055284.11.9e-1741.01putative invertase inhibitor [Cucumis melo var. makuwa] >TYJ99207.1 putative inv... [more]
KAG6572388.11.8e-1542.86hypothetical protein SDJN03_29116, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BJB59.3e-1841.01Putative invertase inhibitor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A6J1C7W51.0e-0834.56uncharacterized protein LOC111008804 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G003200.1ClCG03G003200.1mRNA