ClCG03G003000 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G003000
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Mediator of RNA polymerase II transcription subunit 13, putative
Location	CG_Chr03: 3535229 .. 3535627 (-)
RNA-Seq Expression	ClCG03G003000
Synteny	ClCG03G003000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAAATCAGAGCTTCAAGACGACCACCATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCAGTTCTAAGGCTGCAACTGAATTCGACGCCCATCGCCGGAATTCCAGACCCACTCCTTCTCGGTTCAAGCTTGAGGCGATTCGAGCCCGGTCTTCCGTCAGCGATCGGAGATGGGACTTCGCCCAGTCGCTGTGGGACTCGTATGAGATCGTCACGGTTTCCAAGAAGCTGGAGGCTGGGCTGGTGCTCGACGGAGATGGATTTCGGGAGGCCGACGCCGGCGGTGGGCGGAGTCAGAGGAAAAAGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTCAGTAGGGCTTCTTCGAGGAGATTCCATTAA

mRNA sequence

ATGAAGAAGAAATCAGAGCTTCAAGACGACCACCATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCAGTTCTAAGGCTGCAACTGAATTCGACGCCCATCGCCGGAATTCCAGACCCACTCCTTCTCGGTTCAAGCTTGAGGCGATTCGAGCCCGGTCTTCCGTCAGCGATCGGAGATGGGACTTCGCCCAGTCGCTGTGGGACTCGTATGAGATCGTCACGGTTTCCAAGAAGCTGGAGGCTGGGCTGGTGCTCGACGGAGATGGATTTCGGGAGGCCGACGCCGGCGGTGGGCGGAGTCAGAGGAAAAAGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTCAGTAGGGCTTCTTCGAGGAGATTCCATTAA

Coding sequence (CDS)

ATGAAGAAGAAATCAGAGCTTCAAGACGACCACCATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCAGTTCTAAGGCTGCAACTGAATTCGACGCCCATCGCCGGAATTCCAGACCCACTCCTTCTCGGTTCAAGCTTGAGGCGATTCGAGCCCGGTCTTCCGTCAGCGATCGGAGATGGGACTTCGCCCAGTCGCTGTGGGACTCGTATGAGATCGTCACGGTTTCCAAGAAGCTGGAGGCTGGGCTGGTGCTCGACGGAGATGGATTTCGGGAGGCCGACGCCGGCGGTGGGCGGAGTCAGAGGAAAAAGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTCAGTAGGGCTTCTTCGAGGAGATTCCATTAA

Protein sequence

MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRARSSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH

Homology

[Close]

BLAST of ClCG03G003000 vs. NCBI nr
Match: XP_038894267.1 (uncharacterized protein LOC120082919 [Benincasa hispida])

HSP 1 Score: 234.2 bits (596), Expect = 6.5e-58
Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 1   MKKKSELQ-DDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRA 60
           MKKK ELQ DD HRHLEILKAVAQAWHSHTGSSK A+EFDAHRRNSRPTPSRFKLEAIR 
Sbjct: 1   MKKKPELQDDDDHRHLEILKAVAQAWHSHTGSSKPASEFDAHRRNSRPTPSRFKLEAIRT 60

Query: 61  RSSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREADAGGGRSQRKKRESCNSL 120
           RSSVSDRRWDF QSLWDSYEIVTVSKKLEAGLVLD DGFRE D GGGRSQRKKRESCNSL
Sbjct: 61  RSSVSDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDRDGFREVDGGGGRSQRKKRESCNSL 120

Query: 121 RNLFSRASSRRFH 133
           RNLFSRASSRRF+
Sbjct: 121 RNLFSRASSRRFN 133

[Close]

BLAST of ClCG03G003000 vs. NCBI nr
Match: XP_008438871.1 (PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo] >KAA0055261.1 uncharacterized protein E6C27_scaffold80G001040 [Cucumis melo var. makuwa] >TYJ99185.1 uncharacterized protein E5676_scaffold248G003950 [Cucumis melo var. makuwa])

HSP 1 Score: 221.5 bits (563), Expect = 4.4e-54
Identity = 115/135 (85.19%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIR 60
           MKKK +L    DH RHLEILKAVAQAWH+HTG+SK A+EFDAHRRNSRPTPSRFKLEAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  AR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREADAGGGRSQRKKRESCN 120
           +R +SVS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREA++GGGRSQRK+RESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFSRASSRRFH 133
           SLRNLF+RASSRRF+
Sbjct: 121 SLRNLFNRASSRRFN 135

[Close]

BLAST of ClCG03G003000 vs. NCBI nr
Match: XP_011651756.1 (uncharacterized protein LOC105434938 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 4.8e-53
Identity = 114/135 (84.44%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIR 60
           MKKK +L    D  RHLEILKAVAQAWHSHTG+SK A+EFDAHRRNSRP PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  AR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREADAGGGRSQRKKRESCN 120
           +R S+VSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREA++GGGRSQRK+RESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFSRASSRRFH 133
           SLRNLF+RASSRRF+
Sbjct: 121 SLRNLFNRASSRRFN 135

[Close]

BLAST of ClCG03G003000 vs. NCBI nr
Match: XP_022137185.1 (uncharacterized protein LOC111008716 [Momordica charantia])

HSP 1 Score: 196.4 bits (498), Expect = 1.5e-46
Identity = 109/137 (79.56%), Postives = 114/137 (83.21%), Query Frame = 0


Query: 1   MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRAR 60
           MKKK E++DD HRHLEILKAVAQAWHSHTGSSK A EFDAHRRN R TPSRFKLEAIR R
Sbjct: 1   MKKKPEVEDD-HRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTR 60

Query: 61  SSVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREADAGG-GRSQRKKRES 120
           SS  DR    RWDF+QSLWDSYEIVTVSKKLEAGLVLDGD F E D GG GR QRK  ES
Sbjct: 61  SSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTES 120

Query: 121 CNSLRNLFSRASSRRFH 133
            NSLRNLF+R SSRRF+
Sbjct: 121 NNSLRNLFNRVSSRRFN 136

[Close]

BLAST of ClCG03G003000 vs. NCBI nr
Match: XP_023001654.1 (uncharacterized protein LOC111495727 [Cucurbita maxima])

HSP 1 Score: 188.7 bits (478), Expect = 3.1e-44
Identity = 104/133 (78.20%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRAR 60
           MK K+ ++D+   HLEILKAVAQAW SHTG+SK A+EFDAHRRN R  PSRFKLEAIR+R
Sbjct: 1   MKNKAVVEDE-DGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSR 60

Query: 61  SSVSD-RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREADAGGGRSQRKKRESCNSL 120
           SSV+  RRWDF QSLWDSYEIV VSKKLEAGLVLDGDGFREAD GGGR+QRK+RESCNSL
Sbjct: 61  SSVAGMRRWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREAD-GGGRNQRKQRESCNSL 120

Query: 121 RNLFSRASSRRFH 133
           RNLF+R +SRRF+
Sbjct: 121 RNLFNR-TSRRFN 130

[Close]

BLAST of ClCG03G003000 vs. ExPASy TrEMBL
Match: A0A5A7UNW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003950 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.1e-54
Identity = 115/135 (85.19%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIR 60
           MKKK +L    DH RHLEILKAVAQAWH+HTG+SK A+EFDAHRRNSRPTPSRFKLEAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  AR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREADAGGGRSQRKKRESCN 120
           +R +SVS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREA++GGGRSQRK+RESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFSRASSRRFH 133
           SLRNLF+RASSRRF+
Sbjct: 121 SLRNLFNRASSRRFN 135

[Close]

BLAST of ClCG03G003000 vs. ExPASy TrEMBL
Match: A0A1S3AX17 (uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.1e-54
Identity = 115/135 (85.19%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIR 60
           MKKK +L    DH RHLEILKAVAQAWH+HTG+SK A+EFDAHRRNSRPTPSRFKLEAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  AR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREADAGGGRSQRKKRESCN 120
           +R +SVS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREA++GGGRSQRK+RESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFSRASSRRFH 133
           SLRNLF+RASSRRF+
Sbjct: 121 SLRNLFNRASSRRFN 135

[Close]

BLAST of ClCG03G003000 vs. ExPASy TrEMBL
Match: A0A0A0LTM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.3e-53
Identity = 114/135 (84.44%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIR 60
           MKKK +L    D  RHLEILKAVAQAWHSHTG+SK A+EFDAHRRNSRP PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  AR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREADAGGGRSQRKKRESCN 120
           +R S+VSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREA++GGGRSQRK+RESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFSRASSRRFH 133
           SLRNLF+RASSRRF+
Sbjct: 121 SLRNLFNRASSRRFN 135

[Close]

BLAST of ClCG03G003000 vs. ExPASy TrEMBL
Match: A0A6J1C5Z6 (uncharacterized protein LOC111008716 OS=Momordica charantia OX=3673 GN=LOC111008716 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.3e-47
Identity = 109/137 (79.56%), Postives = 114/137 (83.21%), Query Frame = 0


Query: 1   MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRAR 60
           MKKK E++DD HRHLEILKAVAQAWHSHTGSSK A EFDAHRRN R TPSRFKLEAIR R
Sbjct: 1   MKKKPEVEDD-HRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTR 60

Query: 61  SSVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREADAGG-GRSQRKKRES 120
           SS  DR    RWDF+QSLWDSYEIVTVSKKLEAGLVLDGD F E D GG GR QRK  ES
Sbjct: 61  SSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTES 120

Query: 121 CNSLRNLFSRASSRRFH 133
            NSLRNLF+R SSRRF+
Sbjct: 121 NNSLRNLFNRVSSRRFN 136

[Close]

BLAST of ClCG03G003000 vs. ExPASy TrEMBL
Match: A0A6J1KNC1 (uncharacterized protein LOC111495727 OS=Cucurbita maxima OX=3661 GN=LOC111495727 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.5e-44
Identity = 104/133 (78.20%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRAR 60
           MK K+ ++D+   HLEILKAVAQAW SHTG+SK A+EFDAHRRN R  PSRFKLEAIR+R
Sbjct: 1   MKNKAVVEDE-DGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSR 60

Query: 61  SSVSD-RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREADAGGGRSQRKKRESCNSL 120
           SSV+  RRWDF QSLWDSYEIV VSKKLEAGLVLDGDGFREAD GGGR+QRK+RESCNSL
Sbjct: 61  SSVAGMRRWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREAD-GGGRNQRKQRESCNSL 120

Query: 121 RNLFSRASSRRFH 133
           RNLF+R +SRRF+
Sbjct: 121 RNLFNR-TSRRFN 130

[Close]

BLAST of ClCG03G003000 vs. TAIR 10
Match: AT4G24700.1 (unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.4 bits (259), Expect = 7.3e-23
Identity = 66/143 (46.15%), Postives = 93/143 (65.03%), Query Frame = 0


Query: 1   MKKKSELQDDHH-------RHLEILKAVAQAWHSHTGSSK-AATEFDAHRRNS--RPTPS 60
           M+KK E +D++        + LE++KA AQAW SH+ +SK    EFDA R+++  +   S
Sbjct: 1   MRKKREAKDENEEEEEEKKKRLELMKAAAQAWLSHSQTSKHTVLEFDAQRKHAFVKGKAS 60

Query: 61  RFKLEAIRARSSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREADAGGGRSQR 120
           RFK EA+ A+   S   W+F QSLWD YEI++VSKKLE  L L+   F  +D  G +  +
Sbjct: 61  RFKTEALSAKHHPSFLDWEFGQSLWDPYEILSVSKKLERELTLEEQTFSSSDNDGLKKMK 120

Query: 121 KK--RESCNSLRNLFSRASSRRF 132
           KK  R+S NSLR+LF+R+SS+RF
Sbjct: 121 KKKTRDSRNSLRSLFTRSSSKRF 143

The following BLAST results are available for this feature:

BLAST of ClCG03G003000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894267.1	6.5e-58	91.73	uncharacterized protein LOC120082919 [Benincasa hispida]	[more]
XP_008438871.1	4.4e-54	85.19	PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo] >KAA0055261.1 unc...	[more]
XP_011651756.1	4.8e-53	84.44	uncharacterized protein LOC105434938 [Cucumis sativus]	[more]
XP_022137185.1	1.5e-46	79.56	uncharacterized protein LOC111008716 [Momordica charantia]	[more]
XP_023001654.1	3.1e-44	78.20	uncharacterized protein LOC111495727 [Cucurbita maxima]	[more]

BLAST of ClCG03G003000 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G003000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UNW1	2.1e-54	85.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AX17	2.1e-54	85.19	uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=...	[more]
A0A0A0LTM3	2.3e-53	84.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1	[more]
A0A6J1C5Z6	7.3e-47	79.56	uncharacterized protein LOC111008716 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1KNC1	1.5e-44	78.20	uncharacterized protein LOC111495727 OS=Cucurbita maxima OX=3661 GN=LOC111495727...	[more]

BLAST of ClCG03G003000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24700.1	7.3e-23	46.15	unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..51
None	No IPR available	PANTHER	PTHR34665:SF1	OS02G0595200 PROTEIN	coord: 1..131
None	No IPR available	PANTHER	PTHR34665	FAMILY NOT NAMED	coord: 1..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G003000.1	ClCG03G003000.1	mRNA