ClCG03G002900 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G002900
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr03: 3399863 .. 3404628 (-)
RNA-Seq ExpressionClCG03G002900
SyntenyClCG03G002900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGACATCTTGCTTGGCATTCAAACTTGTCCAAATAACTTCTTACAGTCCACTTTTCGAATCTGTTTAAAGTTATATTTAACCCCATTGTTACTTAAAAAGTTCTAAAAAAATTATTATTATTCGTGTACATGGACTGATCAAGAGGGACGATCTTCAGGCAATAAGTGCTAGAATCTTGGATGAATCAGACCAAAGAAAGGGCACTCATGTTGTCGATCTATCCGCACCAGACTATGGATATGCGAGAAGGACACGAAGGTCAACTTCTATGAGGAAGGATTCAAGCCAACAAATTTCTGTTACTAAAGCTCTATATTCTGACTCTATAATCGTACGAGCCACAACATGTTGTTTCTAGAGATCCATGACACTAATGTATTGTCCAAAATAACCAACTAAATTGAGGGATGAAGATGGTTGTTGACTAAGTAGAACATAATGGATATGGAGCCTTTTAGATAGCGAAGAACACAAGTTGCTGCTTGCCAATGAGATATTGTTGGGCGTTGAAGAAACTGACTTAGATCGTTGATGATAAATGAGATCTTAGGCGGTGTGTGTAAGATATTGGAATGCACCAATCGAATTAAACTTCTATCCTTGGTGGGATTAGGAAGAGGATCTCCATCATAAACTAATAGTTAACAATTTTTCAGCAACAGCAGGTGTGGGAGCAAAGTTTGAGTCCATACGGATGATGATTTAACAGACAAAAGAAAAGCTAGGACACTATACTCATCAATAAATCACTCAGGTTCGGGGCTGATGCCAAAAACTTCGGGTAAAGCACAACTACACACGTTAAGTTATATACTATAGTAAAAGGTCAAGAGAGCGAGTATTGTCTTCTAGAGATCAAATACTCGGATTTAGCTTATCTATTTTAAAATTGTGTTGATTGTATTTAAGGATTGAAATTTCAAACAATATGTGATTGGAAAATAACGAAAGACAAGTGAAAAGTAAAACAAAGGTTGAAATCCAAGAGAAAAAAAAATGTTCAAGGTGTTGATTTCCTTATTTAATTCATTAAGTCGTGTAAATATTCCATGGAACTTTGTGTTAATGATATATTTAAGTCTAGAAACTATTTTCTTGATTATTATCTTTCAACAACAATATTTTCTCATGAAATCCTAATTGATTACTAATTTTTTTGAAACCAAATTAAGAAACATGGAATTAAACATAGTCATGTTCAACTTTCATTATCAATCTATATTTTTATGAAGATTAGATAATGTTCCAATATTATAGGTTAATTAATTAAACATACAGTCTTTATAATTGAACATTTAATTTAACATGCATCAATGATCAATTAAATGTAGAGAAGCACACTAATATTGGAAAACAATCAAATCCACAATCATCCAATATAAAAACAATAAGAATCAACTTAACCCATAAACCAATTCATCAACACTCTAAAACTAAAATGTTTAGCTACTCATCGTTGCTACAAACATACTCTCATAATGCAACAACTATAAAGAGTAAAGAAATAAATGAAATAGAGAAACACTACCGTCATTGTGAATCCCGTGGATGAAGAATGTCGGAAACTCCTTCATTTGATCTTTAGAATCAATGAACAGTGTCAAAAGAAATCCCCACTTTCTCACACTTTCTGTAGCTTAAAACCCTTAAAGGCTCTGTAATTTCGTGTGGAGGTCAACTGAAAACCCTAGGTCTTATAGAGAAAAATTGCCAAAAAAAAAAAAAAATAAAAATAAAAATAAACTTTCCAAATTTGTAGCATTGGCGCCGCAGTGCTACACGACACTGCAAGTTGTGGTTCTATGGCCAACAATTTTGCACATCATCTTATACGGCATCATGACACTCTCCCCCTTTTTTTTTTGCTATTTTGGCCTTTATTTTATATGTACTTTCTAGTTTTGACCCTTTTTTTTTTGACTTCATTGATCAAAATTTGTGTGTTTTAACTCTTTTTAATTTTGAATCTAGTTCTTGTGCTCAAACTCTGAAAAACACTAACAAATGACATCAAATCTAATAATACCAAGTAAAAATCATTCTACATGCAAGGCTAAAAAACACAATTTTCAAGCACGTTTGAGGGTCATGTTGACTTTTTCATCTAGATGGCCATTTAGAAAGCATTATTGATGTCCATTGGACGAATGCACCAATTGTAAGAGATAGCCACTGTGATGATAACTCGAATCATGCATGATTTGATGACTTTACTAAGAGTTCCGACAAAATCTATTCTTGGTGTATGATGAAAGCTTTTGGCAACTATTTGTGCCTTGTGTCCTTCAATACTACCATCAAAACTGTGTTTCAGACGAAATATCCACGTGTTGCCAACCAAATTATATGACTCATCATAAGGAACCACATTCCTACGGTTTTGATTTTTGATTTATTTAATCCGTATTAGGTGAAAACTAGTAACTCAATAGTTAATAATTATCTTGTATGTATAAATATTAATAACTCAGTTTCAACAATTACAATGTATGTACAACAGATCAGATCGAGGGCCAATCAAAAATTAGAAAAAGTGAGATCACATGCTCCACAATATATTTGTAAAATTCTTATTAAATTTCAGTTTTGCCACTTTTTCAATTGAAACATAAAATATTGGTATATACTTCAATTCTTCAAGAAAAATATCATCATCCCTTCACGGTGGAGAAAAAAATGAAGAAAAAAATGAAAACAATAGACGAGGGAAAACTTGGAAATTTTAAAAAAAATTAAAAAAAAAAATTGACTGATCAATATTTTTCCTATTTAAAAATATTTTAAAGAGATGCTATATTTTTTTAAATTTTTTCTCTGATCTGGCTATCTACTGTATCTTTATTTTATTTCTTTTAAAATCCACTCAAAGTCATGTAAAAAAAATGATTTAGAAAACCACAAACTATTTATTTGATTTCATCTATTTCTATCTGATTTACATCAACGACTGCATATAAAAAAGTGATTGACCACGTTTAGGATTCTGTAATCAAAATTGGTAGAGTCGTGATGAAATTCCATTGATATATTAATTGTAATATATGCTATAACAAACATAATTAGATTATTTTTTTACAACATTTACTTAGAATTATAAATCTGTGACATTTAGTATTATATTATCATTACTGTTACTGTGATAAATCCTTAATTGTCATACCGTAATAGTAAAAATATTTATAACAATAATAGTAATAGTATGTAAAGGTATAGTGGATCTCACATAATTTTCAAAAACAATTAGATTAAGCATCTTCCTTCCTCAATCAAATTATCCATTTTTATTATAGATTTGGAAACGAACTCTAACGGCCTGTTTAAATTAACTAGAGAAAAAAATATTTTTCAAAAAAATCGTTTTTATTTAAACTCTTTTGATAAAAATTGTTTAAAATGAATTTTGAATGTGTTTCAAAAGCAATTTTAAGTGGTTGTCAAACACATAAATTGTTTTCAAAATTACTTATTTTCAAAATTAAACACTTTAGAAGTTAATCCAAACATGCCATAAGTTTATTAAGATTATGAAACAGAGGTAACCAACAACAAACATAATCAAATGGGGCCCACTTTTCATATTACCATTGATGAGTTACGTTTTGCTTATGATAATTAAATGTGGCCATGTGTGAAAGTTGTGATCCAACGTTTAAGGTTTGAATATTGATACAATTATTAGTTTAACAATTTAATTAATACAAGCTCTAAACTTTTTAGAGAAACTGAAAAAAAAATAAAAAAAACTTTTTAAAGAAACTGAAAGAAAAAAGATTTTTTTTTTTTTTTTCTTTCTGAAATAAAGCCCAATTGTGAATATATCGAACCTATTTTGTGCACAAATAAAGATGAAGAGGGCAATGTAAAATTCTCCCCAAGGGTAATTTCACATGAAACTAAATTATTAACACAGTTTCTCCATATACATAAAGCAAGTTCTTCTATTTATACACAAAGTTTTCTCAGCTCAATCATTCAAATATATTTTAAAAAGCAATGTCTAAGAATTGTGGCCGACCCACTTAAACTTTGCCTTTGTTTGGTGGAGATGAAAAATCCCACTAAAATAACCATATAAAAGAACACTTCCTCCTTCATATAATAGAGCCACAAAACCACCAAAAACAAATATTTTCTCTCAAAAGAAGTCGTCAAAATAGTAAATTATTCATTCTTTTTCCCTTCAAACGCCCTTTTCATTACATTTCATGCAGAATCCATACAAATTCTAAAACATTGAATCACAAATTTTCTTTGCTTCTTTTTGCAGCTGAGAAGATGAGACGACGATGTGTAGCGGTCGCTGTAGTCGTGCTGTTGGCATTGATTATGAACACTTTCTTCCCTGTTGATGGAAGACATTTTAAGTTGCAAGATGAAAGGCAAGAGAAGAATCCAACTGGTGAGAATCAAATGTTAAGAGGTAGAAAAGAATATGAAACTAGTGATTATAATCACCATGGATGCTATAGAAGTGACTATAATTGTTGGAGTAACAAGGAGACAAAGGAATAGGGGATTTTGTCTAAATAAATACCGACATATATAGAGAGTGGTGTATAATTTGTGGAGTTTTTGTGTTTTTTATAAGTTGAATATTCATTTTTCTAGCTAGGGTCAGCTAGAAAGATGGTACCAAATGAGGATCTTTTGTATGTAATATTGTATGTAATATTATGTAGGTTAATTTTGAAGGATGCATGCAGCATGTGTAATCATGTTATGGTATAATAATAAATGTGTATGGAATTTGAATAATAAA

mRNA sequence

ATGTTTGGACATCTTGCTTGGCATTCAAACTTGGACGATCTTCAGGCAATAAGTGCTAGAATCTTGGATGAATCAGACCAAAGAAAGGGCACTCATGTTGTCGATCTATCCGCACCAGACTATGGATATGCGAGAAGGACACGAAGGTCAACTTCTATGAGGAAGGATTCAAGCCAACAAATTTCTGTTACTAAAGCTCTATATTCTGACTCTATAATCGAAGAGGATCTCCATCATAAACTAATAGTTAACAATTTTTCAGCAACAGCAGCTGAGAAGATGAGACGACGATGTGTAGCGGTCGCTGTAGTCGTGCTGTTGGCATTGATTATGAACACTTTCTTCCCTGTTGATGGAAGACATTTTAAGTTGCAAGATGAAAGGCAAGAGAAGAATCCAACTGGTGAGAATCAAATGTTAAGAGGTAGAAAAGAATATGAAACTAGTGATTATAATCACCATGGATGCTATAGAAGTGACTATAATTGTTGGAGTAACAAGGAGACAAAGGAATAGGGGATTTTGTCTAAATAAATACCGACATATATAGAGAGTGGTGTATAATTTGTGGAGTTTTTGTGTTTTTTATAAGTTGAATATTCATTTTTCTAGCTAGGGTCAGCTAGAAAGATGGTACCAAATGAGGATCTTTTGTATGTAATATTGTATGTAATATTATGTAGGTTAATTTTGAAGGATGCATGCAGCATGTGTAATCATGTTATGGTATAATAATAAATGTGTATGGAATTTGAATAATAAA

Coding sequence (CDS)

ATGTTTGGACATCTTGCTTGGCATTCAAACTTGGACGATCTTCAGGCAATAAGTGCTAGAATCTTGGATGAATCAGACCAAAGAAAGGGCACTCATGTTGTCGATCTATCCGCACCAGACTATGGATATGCGAGAAGGACACGAAGGTCAACTTCTATGAGGAAGGATTCAAGCCAACAAATTTCTGTTACTAAAGCTCTATATTCTGACTCTATAATCGAAGAGGATCTCCATCATAAACTAATAGTTAACAATTTTTCAGCAACAGCAGCTGAGAAGATGAGACGACGATGTGTAGCGGTCGCTGTAGTCGTGCTGTTGGCATTGATTATGAACACTTTCTTCCCTGTTGATGGAAGACATTTTAAGTTGCAAGATGAAAGGCAAGAGAAGAATCCAACTGGTGAGAATCAAATGTTAAGAGGTAGAAAAGAATATGAAACTAGTGATTATAATCACCATGGATGCTATAGAAGTGACTATAATTGTTGGAGTAACAAGGAGACAAAGGAATAG

Protein sequence

MFGHLAWHSNLDDLQAISARILDESDQRKGTHVVDLSAPDYGYARRTRRSTSMRKDSSQQISVTKALYSDSIIEEDLHHKLIVNNFSATAAEKMRRRCVAVAVVVLLALIMNTFFPVDGRHFKLQDERQEKNPTGENQMLRGRKEYETSDYNHHGCYRSDYNCWSNKETKE
Homology
[Close]
BLAST of ClCG03G002900 vs. NCBI nr
Match: KAA0051747.1 (hypothetical protein E6C27_scaffold60G001390 [Cucumis melo var. makuwa] >TYK11551.1 hypothetical protein E5676_scaffold952G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-23
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 0 

Query: 96  RRCVAVAVVVLLAL-IMNTFFPVDGRHFKLQDERQEKNPTGENQMLRGRKEYETSDYNHH 155
           R+ VAVAVV++LAL IMNTFF VDGRH +LQDE  EKNP  E+Q LRGRK+YETS+YNHH
Sbjct: 2   RQHVAVAVVIMLALMIMNTFFLVDGRHLELQDEEHEKNPI-ESQKLRGRKQYETSEYNHH 61

Query: 156 GCYRSDYNCWSNKETKE 172
           GCYRSDYNCWSNKETKE
Sbjct: 62  GCYRSDYNCWSNKETKE 77

[Close]
BLAST of ClCG03G002900 vs. NCBI nr
Match: KAG6607148.1 (hypothetical protein SDJN03_00490, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.1 bits (235), Expect = 6.1e-16
Identity = 51/82 (62.20%), Postives = 60/82 (73.17%), Query Frame = 0 

Query: 91  AEKMRRRCVAVAVVVLLALIMNTFFPVDGRHFKLQDERQEKNPTGENQMLRGRKEYETSD 150
           AEKM+ R VAV VV+L  +I+NT F  DGRH KLQ +R       ENQ L  +K YET++
Sbjct: 18  AEKMKMRRVAVGVVMLF-MIINTLFVADGRHLKLQQQRD------ENQNLEPKKHYETNE 77

Query: 151 YNHHGCYRSDYNCWSN-KETKE 172
           YNHHGCYRSDYNCWSN KET+E
Sbjct: 78  YNHHGCYRSDYNCWSNRKETRE 92

[Close]
BLAST of ClCG03G002900 vs. ExPASy TrEMBL
Match: A0A5D3CI92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold952G00100 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 8.6e-24
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 0 

Query: 96  RRCVAVAVVVLLAL-IMNTFFPVDGRHFKLQDERQEKNPTGENQMLRGRKEYETSDYNHH 155
           R+ VAVAVV++LAL IMNTFF VDGRH +LQDE  EKNP  E+Q LRGRK+YETS+YNHH
Sbjct: 2   RQHVAVAVVIMLALMIMNTFFLVDGRHLELQDEEHEKNPI-ESQKLRGRKQYETSEYNHH 61

Query: 156 GCYRSDYNCWSNKETKE 172
           GCYRSDYNCWSNKETKE
Sbjct: 62  GCYRSDYNCWSNKETKE 77

The following BLAST results are available for this feature:
BLAST of ClCG03G002900 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051747.11.8e-2379.22hypothetical protein E6C27_scaffold60G001390 [Cucumis melo var. makuwa] >TYK1155... [more]
KAG6607148.16.1e-1662.20hypothetical protein SDJN03_00490, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of ClCG03G002900 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG03G002900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CI928.6e-2479.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of ClCG03G002900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G002900.1ClCG03G002900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane