ClCG03G002890 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G002890
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr03: 3390129 .. 3390380 (-)
RNA-Seq Expression	ClCG03G002890
Synteny	ClCG03G002890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATTGGAAACAACCCATTATTGCTAATTTGGTTGTTGTTATTATTACTTTTGATCTCCTCTTGCTTGCCTTCCGTTGATGCAAAGAGAATTGAGGCCATGGAAGCTCAGAAGAAGCAATTGAATGAAGATGGGAAGCCCTATGTTATTGGACATCGTTATCCAGAAGAAAGTGGTTCAAAGAACCATCACTTTATCCCAAGAGAAGCTTTCAACAACTATGGTGGGAGTGATAATGGTGGTGACTAA

mRNA sequence

ATGAGAATTGGAAACAACCCATTATTGCTAATTTGGTTGTTGTTATTATTACTTTTGATCTCCTCTTGCTTGCCTTCCGTTGATGCAAAGAGAATTGAGGCCATGGAAGCTCAGAAGAAGCAATTGAATGAAGATGGGAAGCCCTATGTTATTGGACATCGTTATCCAGAAGAAAGTGGTTCAAAGAACCATCACTTTATCCCAAGAGAAGCTTTCAACAACTATGGTGGGAGTGATAATGGTGGTGACTAA

Coding sequence (CDS)

ATGAGAATTGGAAACAACCCATTATTGCTAATTTGGTTGTTGTTATTATTACTTTTGATCTCCTCTTGCTTGCCTTCCGTTGATGCAAAGAGAATTGAGGCCATGGAAGCTCAGAAGAAGCAATTGAATGAAGATGGGAAGCCCTATGTTATTGGACATCGTTATCCAGAAGAAAGTGGTTCAAAGAACCATCACTTTATCCCAAGAGAAGCTTTCAACAACTATGGTGGGAGTGATAATGGTGGTGACTAA

Protein sequence

MRIGNNPLLLIWLLLLLLLISSCLPSVDAKRIEAMEAQKKQLNEDGKPYVIGHRYPEESGSKNHHFIPREAFNNYGGSDNGGD

Homology

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BLAST of ClCG03G002890 vs. NCBI nr
Match: KAG6607149.1 (hypothetical protein SDJN03_00491, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 3.9e-08
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 15 LLLLLISSCLPSVDAKRIEAMEAQKKQLNEDGKPYVIGHRYPEESGSKNHHFIPREAFNN 74
          +LL+L SSCLP+ DAK++      K +LNEDGK   +G RYP++SG KNHHFIPR+AFNN
Sbjct: 14 VLLVLSSSCLPAADAKQL------KWRLNEDGKAGHVG-RYPDQSGRKNHHFIPRDAFNN 73

Query: 75 YGGSDNG 82
          Y     G
Sbjct: 74 YAKRQAG 73

The following BLAST results are available for this feature:

BLAST of ClCG03G002890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607149.1	3.9e-08	56.72	hypothetical protein SDJN03_00491, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG03G002890 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G002890 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G002890 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..83
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..23 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G002890.1	ClCG03G002890.1	mRNA