ClCG03G002700 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G002700
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr03: 3101504 .. 3101851 (-)
RNA-Seq ExpressionClCG03G002700
SyntenyClCG03G002700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTTCATTATGATACTGTACTTTTCACATTCTTCTTCCTTCTTGCCATGTCTTCTCCATCCACGCTCATGGCAATTTCTAGAATCATGTTCGATTCTGTACCTGCTCCAACAACTTTGGAAGCTACAATTCCTACTTTTAAAGAATCTATTGTCGAAGTACCTGAGTCATCAATCTCCCTTCCTCCAAGCTCTTACGAGTTTACTACTTTTGATCCTAATGGAATGGGTGCAAGGGCACCAATCCCTGCCTCAACCTTCCTAAGCTGCATGCCCAAAGGACCGATCAGATGGTCTGCTCCAAATCCAAAACATAACAATATGTTGGAATCAACTATGTGTTAA

mRNA sequence

ATGGCATTTCATTATGATACTGTACTTTTCACATTCTTCTTCCTTCTTGCCATGTCTTCTCCATCCACGCTCATGGCAATTTCTAGAATCATGTTCGATTCTGTACCTGCTCCAACAACTTTGGAAGCTACAATTCCTACTTTTAAAGAATCTATTGTCGAAGTACCTGAGTCATCAATCTCCCTTCCTCCAAGCTCTTACGAGTTTACTACTTTTGATCCTAATGGAATGGGTGCAAGGGCACCAATCCCTGCCTCAACCTTCCTAAGCTGCATGCCCAAAGGACCGATCAGATGGTCTGCTCCAAATCCAAAACATAACAATATGTTGGAATCAACTATGTGTTAA

Coding sequence (CDS)

ATGGCATTTCATTATGATACTGTACTTTTCACATTCTTCTTCCTTCTTGCCATGTCTTCTCCATCCACGCTCATGGCAATTTCTAGAATCATGTTCGATTCTGTACCTGCTCCAACAACTTTGGAAGCTACAATTCCTACTTTTAAAGAATCTATTGTCGAAGTACCTGAGTCATCAATCTCCCTTCCTCCAAGCTCTTACGAGTTTACTACTTTTGATCCTAATGGAATGGGTGCAAGGGCACCAATCCCTGCCTCAACCTTCCTAAGCTGCATGCCCAAAGGACCGATCAGATGGTCTGCTCCAAATCCAAAACATAACAATATGTTGGAATCAACTATGTGTTAA

Protein sequence

MAFHYDTVLFTFFFLLAMSSPSTLMAISRIMFDSVPAPTTLEATIPTFKESIVEVPESSISLPPSSYEFTTFDPNGMGARAPIPASTFLSCMPKGPIRWSAPNPKHNNMLESTMC
Homology
BLAST of ClCG03G002700 vs. NCBI nr
Match: KAE8649709.1 (hypothetical protein Csa_012565, partial [Cucumis sativus] >KAE8649711.1 hypothetical protein Csa_012458, partial [Cucumis sativus] >KGN55007.2 hypothetical protein Csa_012551, partial [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 2.5e-29
Identity = 77/110 (70.00%), Postives = 86/110 (78.18%), Query Frame = 0

Query: 1   MAFHYDTVLFTFFFLLAMSSPSTLMAISRIMFDSVPAPTTL-EATIPTFKESIVEVPE-- 60
           MAF +D V FTFFFL+AMSSPS +MA +R M D    PTTL E+TI  F+ESI EVPE  
Sbjct: 1   MAFQHDVVFFTFFFLIAMSSPSKIMATTRGMLDLAQPPTTLEESTIRNFRESIAEVPESS 60

Query: 61  SSISLPPSSYEFTTFDPNGMGARAPIPASTFLSCMPKGPIRWSAPNPKHN 108
           SSISLPP+S EF +FDPNGMGARAP+PAS  L C PKGPI WSAPNPKHN
Sbjct: 61  SSISLPPTSDEFISFDPNGMGARAPLPAS-LLDCKPKGPIAWSAPNPKHN 109

BLAST of ClCG03G002700 vs. NCBI nr
Match: KAE8649707.1 (hypothetical protein Csa_012825 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 7.2e-29
Identity = 76/110 (69.09%), Postives = 86/110 (78.18%), Query Frame = 0

Query: 1   MAFHYDTVLFTFFFLLAMSSPSTLMAISRIMFDSVPAPTTL-EATIPTFKESIVEVPE-- 60
           MAF +D V FTFFFL+AMSSPS ++A +R M D    PTTL E+TI  F+ESI EVPE  
Sbjct: 1   MAFQHDVVFFTFFFLIAMSSPSKIIATTRGMLDLAQPPTTLEESTIRNFRESIAEVPESS 60

Query: 61  SSISLPPSSYEFTTFDPNGMGARAPIPASTFLSCMPKGPIRWSAPNPKHN 108
           SSISLPP+S EF +FDPNGMGARAP+PAS  L C PKGPI WSAPNPKHN
Sbjct: 61  SSISLPPTSDEFISFDPNGMGARAPLPAS-LLDCKPKGPIAWSAPNPKHN 109

BLAST of ClCG03G002700 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.5 bits (158), Expect = 3.5e-07
Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 0

Query: 12  FFFLLAMSSPSTLMAISRIMFDSVPAPTTLEATIPTFKESIVEVPESSISLPPSSYEFTT 71
           FF L+ +SSPST++A SR M     A  T E+            P+  +  PP+S +F T
Sbjct: 13  FFLLIVISSPSTIIATSRHML----ALDTKESP-----------PQPPMDKPPTSNDFDT 72

Query: 72  FD-PNGMGARAPIPASTFLSCMPKGPIRWSAPNPKHNNM 110
              PNG  A  P+P S   SC PKGP+RWS+P+P  NN+
Sbjct: 73  LSLPNGTKAMPPMPESAVRSCKPKGPVRWSSPSPIRNNL 96

BLAST of ClCG03G002700 vs. NCBI nr
Match: TYK09256.1 (hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 46/123 (37.40%), Postives = 63/123 (51.22%), Query Frame = 0

Query: 1   MAFHYDTVLFTFFFLLAMSSPSTLMAISRIMFDSVPAPT------TL------EATIPTF 60
           MA H   +LF  F +LA++S ST MA SR M    P PT      TL       A+ P  
Sbjct: 1   MALHRAPLLFFLFLVLALASSSTTMATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPL 60

Query: 61  KES--IVEVPESSISLPPSSYEFTTFD-PNGMGARAPIPASTFLSCMPKGPIRWSAPNPK 109
            E+  +     SS S+PPS  +F  F+ P+ + A  P P     SC PKG +R+SAP+ +
Sbjct: 61  SEATLVAGFGSSSTSMPPSFGDFVAFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDR 120

BLAST of ClCG03G002700 vs. NCBI nr
Match: KAG6573847.1 (hypothetical protein SDJN03_27734, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 38/109 (34.86%), Postives = 62/109 (56.88%), Query Frame = 0

Query: 15  LLAMSSPSTLMAISRIMFDSVPAPTTL------EATIPTFKESIVEVPESSISLPPSSYE 74
           +++ SSPST      + F  +P P+T       E+T  T++ + V    S+I + P+S +
Sbjct: 17  MISNSSPST------VSFPVIPTPSTSTTTFDGESTPSTYEATTVVGSGSAIFMSPTSND 76

Query: 75  FTTFD-PNGMGARAPIPASTFLSCMPKGPIRWSAPNPKHNNM-LESTMC 116
           F  F+ PNGM A+ P+      SC PKG +R+SAP+ + N++ L S +C
Sbjct: 77  FVAFEVPNGMDAKPPMSNRVIRSCKPKGRMRYSAPSDRRNSLPLVSIVC 119

BLAST of ClCG03G002700 vs. ExPASy TrEMBL
Match: A0A5D3CFX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002500 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.3e-06
Identity = 46/123 (37.40%), Postives = 63/123 (51.22%), Query Frame = 0

Query: 1   MAFHYDTVLFTFFFLLAMSSPSTLMAISRIMFDSVPAPT------TL------EATIPTF 60
           MA H   +LF  F +LA++S ST MA SR M    P PT      TL       A+ P  
Sbjct: 1   MALHRAPLLFFLFLVLALASSSTTMATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPL 60

Query: 61  KES--IVEVPESSISLPPSSYEFTTFD-PNGMGARAPIPASTFLSCMPKGPIRWSAPNPK 109
            E+  +     SS S+PPS  +F  F+ P+ + A  P P     SC PKG +R+SAP+ +
Sbjct: 61  SEATLVAGFGSSSTSMPPSFGDFVAFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDR 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649709.12.5e-2970.00hypothetical protein Csa_012565, partial [Cucumis sativus] >KAE8649711.1 hypothe... [more]
KAE8649707.17.2e-2969.09hypothetical protein Csa_012825 [Cucumis sativus][more]
KAG6595583.13.5e-0741.41hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK09256.11.9e-0537.40hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa][more]
KAG6573847.11.2e-0434.86hypothetical protein SDJN03_27734, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CFX39.3e-0637.40Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G002700.2ClCG03G002700.2mRNA