ClCG03G001630 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G001630
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	WUSCHEL-related homeobox like
Location	CG_Chr03: 1624483 .. 1625867 (-)
RNA-Seq Expression	ClCG03G001630
Synteny	ClCG03G001630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGACAGCGGCGGAGATGGGCGGCGGCGGTCCTCCGGTGAGTTCACGGTGGAACCCGACAAAAGAGCAAATAAGCATATTGGAGAATTTGTACAGACAAGGAGTGAGAACGCCGAGTGCTGACCAAATACAACAGATAACGAGTAGGCTTAAGGCTTATGGTCATATTGAAGGCAAAAATGTGTTCTATTGGTTTCAGAATCATAAAGCTAGGCAAAGGCAGAAGCAGAAACAACATTCCACTTTCCCTTTATTTAATCACTTTCTTCACTTCAATCCCAACTCTCCTTTCCCTCCTCCGAGTGGTTCGTATCGTAATACTCTAGTAATACATACTATTTGTCAGTTCAATTATACTATTTTCTTTTTAATGAAAAATATTCAAATCTCTTATTTTTATTTTTGCTTGGAACCTTCACTTCCATCTCAAAATCTACATCTCTCAAATTAAGTGATAAGTTTGTTAGGAAATTAGATTCTTCCTACCAAAGTGAGTATAACTTGATTGGCATGCAAGTATTCTAGAAATTACAAGATCTGTGTTCATCCTTGACCCATTAGGTTAATTTTGTTTGGTCTAATTCTAATTTTCAGATTCAAAGATCATCATGTTGCATAAATTGATTAGTTTAGGTGTTGTTTGATAATTATTTGGTTTTTAAAAAATTTATATTTATTTTCTTCTTTATTTGAATTCTCAGTAAAATTTCAAACACAATACCAAGTTTTTTTTTTTTTTTTTAAATTTTTCAAAATTTGGTATGAATTTTGAAAATATGATTAGAAAGTTACAGGGTAGATAAGCATAAATTAAAAAAAAAAAAAGCTGAAAATCAAATGATTATTGAATGATAGAATAATGTAATGTTATTTGTTGATGGTAATCACTAAGCCTATATAGTGCTTAAATGAAATGAAGTTTACTCCTTATTGATTATCTTAAGCATTTTTTTTTTTTTGTACAATTGCAATGGAATTATTTATTGATATTAAATTTTCATGTTTTGTTCATTATTGTGATGATCAGTGGTTTGCAGCCCATACTACGTACATCAAAACGACGTCGGATTGTATCAACAGTACCAAAACAATTCGATGGTGATTCAAACCGGTGGGATTGTGAAGAGAAGATCAAAGAGTGAGAGAAGAAATTGTAATAATAACAATAATATTAATATTAATGAGGAATCCGCCATTAATAATAACCTTAGCTTTCAAAGTACAGAAACTCTCCCTCTCTTTCCCACGCACCCAACTGGGGATTTACAAGCCGGGCTTGCGTCACCGTCGCAGCCGATGGCGCCCGGTTCGGCCTCTTCTGGAAACTCTGCTGACGATTCTGCAGGCGGCCGTCGACCTTACTTTGAATTTTTTATGTAG

mRNA sequence

ATGGAAAAGACAGCGGCGGAGATGGGCGGCGGCGGTCCTCCGGTGAGTTCACGGTGGAACCCGACAAAAGAGCAAATAAGCATATTGGAGAATTTGTACAGACAAGGAGTGAGAACGCCGAGTGCTGACCAAATACAACAGATAACGAGTAGGCTTAAGGCTTATGGTCATATTGAAGGCAAAAATGTGTTCTATTGGTTTCAGAATCATAAAGCTAGGCAAAGGCAGAAGCAGAAACAACATTCCACTTTCCCTTTATTTAATCACTTTCTTCACTTCAATCCCAACTCTCCTTTCCCTCCTCCGAGTGGTTCGTATCGTAATACTCTAGAAATTAGATTCTTCCTACCAAAATTCAAAGATCATCATAATAATGTAATGTTATTTGTTGATGTGGTTTGCAGCCCATACTACGTACATCAAAACGACGTCGGATTGTATCAACAGTACCAAAACAATTCGATGGTGATTCAAACCGGTGGGATTGTGAAGAGAAGATCAAAGAGTGAGAGAAGAAATTGTAATAATAACAATAATATTAATATTAATGAGGAATCCGCCATTAATAATAACCTTAGCTTTCAAAGTACAGAAACTCTCCCTCTCTTTCCCACGCACCCAACTGGGGATTTACAAGCCGGGCTTGCGTCACCGTCGCAGCCGATGGCGCCCGGTTCGGCCTCTTCTGGAAACTCTGCTGACGATTCTGCAGGCGGCCGTCGACCTTACTTTGAATTTTTTATGTAG

Coding sequence (CDS)

ATGGAAAAGACAGCGGCGGAGATGGGCGGCGGCGGTCCTCCGGTGAGTTCACGGTGGAACCCGACAAAAGAGCAAATAAGCATATTGGAGAATTTGTACAGACAAGGAGTGAGAACGCCGAGTGCTGACCAAATACAACAGATAACGAGTAGGCTTAAGGCTTATGGTCATATTGAAGGCAAAAATGTGTTCTATTGGTTTCAGAATCATAAAGCTAGGCAAAGGCAGAAGCAGAAACAACATTCCACTTTCCCTTTATTTAATCACTTTCTTCACTTCAATCCCAACTCTCCTTTCCCTCCTCCGAGTGGTTCGTATCGTAATACTCTAGAAATTAGATTCTTCCTACCAAAATTCAAAGATCATCATAATAATGTAATGTTATTTGTTGATGTGGTTTGCAGCCCATACTACGTACATCAAAACGACGTCGGATTGTATCAACAGTACCAAAACAATTCGATGGTGATTCAAACCGGTGGGATTGTGAAGAGAAGATCAAAGAGTGAGAGAAGAAATTGTAATAATAACAATAATATTAATATTAATGAGGAATCCGCCATTAATAATAACCTTAGCTTTCAAAGTACAGAAACTCTCCCTCTCTTTCCCACGCACCCAACTGGGGATTTACAAGCCGGGCTTGCGTCACCGTCGCAGCCGATGGCGCCCGGTTCGGCCTCTTCTGGAAACTCTGCTGACGATTCTGCAGGCGGCCGTCGACCTTACTTTGAATTTTTTATGTAG

Protein sequence

MEKTAAEMGGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNHKARQRQKQKQHSTFPLFNHFLHFNPNSPFPPPSGSYRNTLEIRFFLPKFKDHHNNVMLFVDVVCSPYYVHQNDVGLYQQYQNNSMVIQTGGIVKRRSKSERRNCNNNNNININEESAINNNLSFQSTETLPLFPTHPTGDLQAGLASPSQPMAPGSASSGNSADDSAGGRRPYFEFFM

Homology

[Close]

BLAST of ClCG03G001630 vs. NCBI nr
Match: KGN65708.1 (hypothetical protein Csa_019930 [Cucumis sativus])

HSP 1 Score: 315.5 bits (807), Expect = 4.2e-82
Identity = 180/250 (72.00%), Postives = 188/250 (75.20%), Query Frame = 0


Query: 9   GGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQ 68
           GGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQIT RLK YGHIEGKNVFYWFQ
Sbjct: 15  GGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITVRLKDYGHIEGKNVFYWFQ 74

Query: 69  NHKARQRQKQKQ-------HSTFPLFNHFLHFN-PNSPFPPPSGSYRNTLEIRFFLPKFK 128
           NHKARQRQKQKQ       +S+FP FNHFLHFN  NSPFPPP              P   
Sbjct: 75  NHKARQRQKQKQQHHHHHFNSSFPFFNHFLHFNHNNSPFPPP--------------PPPP 134

Query: 129 DHHNNVMLFVDVVCSPYYVHQNDVGLYQQYQNNSMVIQTGGIVKRRSKSERRNCNNNNNI 188
             +N       VVCSPYYVHQNDVGLY QYQNNSMVIQ+GGI  +RSKSERRNC     I
Sbjct: 135 PPNN-------VVCSPYYVHQNDVGLYPQYQNNSMVIQSGGIETKRSKSERRNC----II 194

Query: 189 NINEESAIN-NNLSFQSTETLPLFPTHPTGDLQAGLASPSQP-MAPGSASSGNSADDSAG 248
           NINEES IN NNLS+Q+TETL LFPTHPTGDLQA   SP  P M P SAS   S DDSA 
Sbjct: 195 NINEESTINDNNLSYQTTETLSLFPTHPTGDLQASPQSPPPPSMVPTSASDEISVDDSAH 239

[Close]

BLAST of ClCG03G001630 vs. NCBI nr
Match: XP_022158904.1 (WUSCHEL-related homeobox 2 [Momordica charantia])

HSP 1 Score: 238.0 bits (606), Expect = 8.5e-59
Identity = 139/238 (58.40%), Postives = 157/238 (65.97%), Query Frame = 0


Query: 11  GGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNH 70
           GG P SSRWNPTKEQI ILENLY+QGVRTPSADQI +IT+ LKAYGHIEGKNVFYWFQNH
Sbjct: 12  GGAPASSRWNPTKEQIGILENLYKQGVRTPSADQIHEITNSLKAYGHIEGKNVFYWFQNH 71

Query: 71  KARQRQKQKQHSTFPLFNHFLHFNPNSPFPPPSGSYRNTLEIRFFLPKFKDHHNNVMLFV 130
           KARQRQKQKQ S   LF+HFLHFN N P+  P                            
Sbjct: 72  KARQRQKQKQQS-LALFSHFLHFNSN-PYSSP---------------------------- 131

Query: 131 DVVCSPYYVHQNDVGLYQQYQNNSMVIQTGGIVKRRSKSERRNCNNNNNININEESAINN 190
           +V CSPYYVHQNDVGLY  Y NNS  +Q+ GI +RRSKSERRN N        E SAIN 
Sbjct: 132 NVGCSPYYVHQNDVGLYPPYHNNSKALQSSGIARRRSKSERRNSNGE-----IEVSAINL 191

Query: 191 NLSFQSTETLPLFPTHPTGDLQAGLASPSQPMAPGSASSGNSADDSAGGRRPYFEFFM 249
           N+    TETL LFPTHPTGDLQ G   P  P +  +++  +SA  S+ GR  YF+FF+
Sbjct: 192 NI---QTETLSLFPTHPTGDLQVG---PLPPTSSETSADHSSAGVSSSGRGTYFDFFL 208

[Close]

BLAST of ClCG03G001630 vs. NCBI nr
Match: XP_022998665.1 (WUSCHEL-related homeobox 2-like [Cucurbita maxima])

HSP 1 Score: 231.5 bits (589), Expect = 8.0e-57
Identity = 144/247 (58.30%), Postives = 160/247 (64.78%), Query Frame = 0


Query: 11  GGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNH 70
           GG PVSSRWNPTKEQISILENLY QGVRTPSA+QIQQIT+RLK+YGHIEGKNVFYWFQNH
Sbjct: 8   GGTPVSSRWNPTKEQISILENLYEQGVRTPSAEQIQQITNRLKSYGHIEGKNVFYWFQNH 67

Query: 71  KARQRQKQKQHSTFPL--FNHFLHFNPNSP-FPPPSGSYRNTLEIRFFLPKFKDHHNNVM 130
           KARQRQKQKQ  T  L  FNHFL   P +P FP P                         
Sbjct: 68  KARQRQKQKQDHTATLAYFNHFLPLPPFAPHFPSP------------------------- 127

Query: 131 LFVDVVCSPYYVHQNDVGLYQQYQNNSMVIQTGGIVKRRSKSERRNCNNNNNININEESA 190
              +VVCSPYYVHQN+VG+Y   Q+NS          RRS SERR+C NN       +S 
Sbjct: 128 ---NVVCSPYYVHQNNVGVYPHQQSNS--------TTRRSNSERRSCTNNPGFGY--QSC 187

Query: 191 INNNLSFQSTETLPLFPTHPTGDLQAGLASPS----QPMAPGSA--SSGNSADDSAGGRR 249
             +N    +T+TLPLFPTHPTGDLQ G   PS    Q MA  SA  SSG SAD+S+GG R
Sbjct: 188 QTDN---PATQTLPLFPTHPTGDLQVGPPPPSPLPPQAMASASASSSSGMSADESSGGCR 213

[Close]

BLAST of ClCG03G001630 vs. NCBI nr
Match: XP_031742465.1 (WUSCHEL-related homeobox 2 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 4.4e-55
Identity = 139/242 (57.44%), Postives = 144/242 (59.50%), Query Frame = 0


Query: 9   GGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQ 68
           GGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQIT RLK YGHIE         
Sbjct: 15  GGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITVRLKDYGHIE--------- 74

Query: 69  NHKARQRQKQKQHSTFPLFNHFLHFNPNSPFPPPSGSYRNTLEIRFFLPKFKDHHNNVML 128
                                                                       
Sbjct: 75  ------------------------------------------------------------ 134

Query: 129 FVDVVCSPYYVHQNDVGLYQQYQNNSMVIQTGGIVKRRSKSERRNCNNNNNININEESAI 188
              VVCSPYYVHQNDVGLY QYQNNSMVIQ+GGI  +RSKSERRNC     ININEES I
Sbjct: 135 ---VVCSPYYVHQNDVGLYPQYQNNSMVIQSGGIETKRSKSERRNC----IININEESTI 180

Query: 189 N-NNLSFQSTETLPLFPTHPTGDLQAGLASPSQP-MAPGSASSGNSADDSAGGRRPYFEF 248
           N NNLS+Q+TETL LFPTHPTGDLQA   SP  P M P SAS   S DDSA GR+PYFEF
Sbjct: 195 NDNNLSYQTTETLSLFPTHPTGDLQASPQSPPPPSMVPTSASDEISVDDSAHGRQPYFEF 180

[Close]

BLAST of ClCG03G001630 vs. NCBI nr
Match: KAG6607233.1 (Inner membrane protein ALBINO3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 220.7 bits (561), Expect = 1.4e-53
Identity = 142/249 (57.03%), Postives = 158/249 (63.45%), Query Frame = 0


Query: 11  GGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNH 70
           GG PVSSRWNPTKEQISILENLY QGVRTPSA+QIQQIT+RLK+YGHIEGKNVFYWFQNH
Sbjct: 8   GGTPVSSRWNPTKEQISILENLYEQGVRTPSAEQIQQITNRLKSYGHIEGKNVFYWFQNH 67

Query: 71  KARQRQKQKQ-HS-TFPLFNHFLHFNPNSP-FPPPSGSYRNTLEIRFFLPKFKDHHNNVM 130
           KARQRQKQKQ HS T   FNHFL   P SP FP P                         
Sbjct: 68  KARQRQKQKQDHSATLAYFNHFLPLPPFSPHFPSP------------------------- 127

Query: 131 LFVDVVCSPYYVHQNDVGLYQQYQNNSMVIQTGGIVKRRSKSERRNCNNNNNININEESA 190
              +VVCSPYYVHQN+VG+Y Q Q+NS +        RRS          +N     +S 
Sbjct: 128 ---NVVCSPYYVHQNNVGVYPQQQSNSKM--------RRS----------HNGGFGYQSC 187

Query: 191 INNNLSFQSTETLPLFPTHPTGDLQAG-LASPSQP-------MAPGSASSGNSADDSAGG 249
            N+N    +T+TL LFPTHPTGDLQAG   SPS P        A  SASSG SAD+S+GG
Sbjct: 188 QNDN---PTTQTLSLFPTHPTGDLQAGPPPSPSPPPPHAEAATATASASSGMSADESSGG 207

[Close]

BLAST of ClCG03G001630 vs. ExPASy Swiss-Prot
Match: Q6X7K1 (WUSCHEL-related homeobox 2 OS=Arabidopsis thaliana OX=3702 GN=WOX2 PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.3e-35
Identity = 107/255 (41.96%), Postives = 136/255 (53.33%), Query Frame = 0


Query: 12  GPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNHK 71
           G   SSRWNPTK+QI++LENLY++G+RTPSADQIQQIT RL+AYGHIEGKNVFYWFQNHK
Sbjct: 8   GTASSSRWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHK 67

Query: 72  ARQRQKQKQHSTFPLFNHFLHFNPNSPFPPPSGSYRNTLEIRFFLPKFKDHHNNVMLFVD 131
           ARQRQKQKQ      FN  LH      +PPP  +        ++L +  DHH N      
Sbjct: 68  ARQRQKQKQ-ERMAYFNRLLHKTSRFFYPPPCSNVGCVSP--YYLQQASDHHMNQH---G 127

Query: 132 VVCSPYYVHQNDV----GLYQ-----QYQNNSMVIQTGGIVKRRSKSE---------RRN 191
            V +   +H+N+V    G Y+     Q+Q     I+T    +               R N
Sbjct: 128 SVYTNDLLHRNNVMIPSGGYEKRTVTQHQKQLSDIRTTAATRMPISPSSLRFDRFALRDN 187

Query: 192 CNNNNNININEESAINNNLSFQSTETLPLFPTHPTGDLQA-GLASPSQPMAPGSASSGNS 248
           C    +IN+N              +TLPLFP  P     A G+ S S   A GS S  + 
Sbjct: 188 CYAGEDINVNS----------SGRKTLPLFPLQPLNASNADGMGSSS--FALGSDSPVDC 244

[Close]

BLAST of ClCG03G001630 vs. ExPASy Swiss-Prot
Match: A2WWU7 (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. indica OX=39946 GN=WOX5 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.9e-25
Identity = 106/314 (33.76%), Postives = 134/314 (42.68%), Query Frame = 0


Query: 1   MEKTAAEMGGGG---------------PPVS-----------SRWNPTKEQISILENLYR 60
           ME T   +GGGG               PP+S           +RW PTKEQI++LE LYR
Sbjct: 1   METTTTTLGGGGGGRAGGFSDPPSPLSPPLSPASAAAAALANARWTPTKEQIAVLEGLYR 60

Query: 61  QGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNHKARQRQKQKQHSTFPLFNHFLHFN 120
           QG+RTP+A+QIQQIT+RL+ +GHIEGKNVFYWFQNHKARQRQKQKQ S F  F+      
Sbjct: 61  QGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQKQQS-FDYFSKLFRRP 120

Query: 121 PNSPF--------------------PPPSGSYRNTLE-----IRFFLPKFKDHHNNVMLF 180
           P  P                     PPP  +   T       + F  P F     N   +
Sbjct: 121 PPLPVLHRPLARPFPLAMAPTAMPPPPPPPATTTTAACNAGGVMFRTPSFMPVATNNASY 180

Query: 181 VDVVCSPYY-----VHQNDVGLYQQYQNNSMVIQTGGIVKRRSKSERRNCNNNNNININE 240
                +P       V  +D    Q     +M +Q        + +  R            
Sbjct: 181 YPQQQTPLLYPGMEVCPHDKSTAQPPATTTMYLQAPPSSAHLAAAAGRGA-------AEA 240

Query: 241 ESAINNNLSFQSTETLPLFPTHPT------GDLQAGLA----SPSQPMAPGSAS-SGNSA 248
           E            ETL LFP  PT        L+AG A    SP+ P A  S S    S+
Sbjct: 241 EGHGRRGGGAGGRETLQLFPLQPTFVLPDHKPLRAGSACAAVSPTTPSASASFSWESESS 300

[Close]

BLAST of ClCG03G001630 vs. ExPASy Swiss-Prot
Match: Q8LR86 (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX5 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.9e-25
Identity = 106/314 (33.76%), Postives = 134/314 (42.68%), Query Frame = 0


Query: 1   MEKTAAEMGGGG---------------PPVS-----------SRWNPTKEQISILENLYR 60
           ME T   +GGGG               PP+S           +RW PTKEQI++LE LYR
Sbjct: 1   METTTTTLGGGGGGRAGGFSDPPSPLSPPLSPASAAAAALANARWTPTKEQIAVLEGLYR 60

Query: 61  QGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNHKARQRQKQKQHSTFPLFNHFLHFN 120
           QG+RTP+A+QIQQIT+RL+ +GHIEGKNVFYWFQNHKARQRQKQKQ S F  F+      
Sbjct: 61  QGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQKQQS-FDYFSKLFRRP 120

Query: 121 PNSPF--------------------PPPSGSYRNTLE-----IRFFLPKFKDHHNNVMLF 180
           P  P                     PPP  +   T       + F  P F     N   +
Sbjct: 121 PPLPVLHRPLARPFPLAMAPTAMPPPPPPPATTTTAACNAGGVMFRTPSFMPVATNNASY 180

Query: 181 VDVVCSPYY-----VHQNDVGLYQQYQNNSMVIQTGGIVKRRSKSERRNCNNNNNININE 240
                +P       V  +D    Q     +M +Q        + +  R            
Sbjct: 181 YPQQQTPLLYPGMEVCPHDKSTAQPPATTTMYLQAPPSSAHLAAAAGRGA-------AEA 240

Query: 241 ESAINNNLSFQSTETLPLFPTHPT------GDLQAGLA----SPSQPMAPGSAS-SGNSA 248
           E            ETL LFP  PT        L+AG A    SP+ P A  S S    S+
Sbjct: 241 EGHGRRGGGAGGRETLQLFPLQPTFVLPDHKPLRAGSACAAVSPTTPSASASFSWESESS 300

[Close]

BLAST of ClCG03G001630 vs. ExPASy Swiss-Prot
Match: Q6X7K0 (WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana OX=3702 GN=WOX1 PE=2 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23
Identity = 51/70 (72.86%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 13  PP--VSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNH 72
           PP  VSSRWNPT +Q+ +LE LYRQG RTPSAD IQQIT++L+ YG IEGKNVFYWFQNH
Sbjct: 69  PPVMVSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNH 128

Query: 73  KARQRQKQKQ 81
           KAR+RQK+++
Sbjct: 129 KARERQKRRR 138

[Close]

BLAST of ClCG03G001630 vs. ExPASy Swiss-Prot
Match: Q6X7J9 (WUSCHEL-related homeobox 4 OS=Arabidopsis thaliana OX=3702 GN=WOX4 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-21
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 14  PVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNHKAR 73
           P  +RWNPT+EQI ILE LY+ G+RTP+A QI+ IT +L  YG IEGKNVFYWFQNHKAR
Sbjct: 86  PGGTRWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKAR 145

Query: 74  QRQKQKQHSTFPL 87
           +RQKQK+++   L
Sbjct: 146 ERQKQKRNNLISL 158

[Close]

BLAST of ClCG03G001630 vs. ExPASy TrEMBL
Match: A0A0A0LVA9 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G505930 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 2.0e-82
Identity = 180/250 (72.00%), Postives = 188/250 (75.20%), Query Frame = 0


Query: 9   GGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQ 68
           GGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQIT RLK YGHIEGKNVFYWFQ
Sbjct: 15  GGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITVRLKDYGHIEGKNVFYWFQ 74

Query: 69  NHKARQRQKQKQ-------HSTFPLFNHFLHFN-PNSPFPPPSGSYRNTLEIRFFLPKFK 128
           NHKARQRQKQKQ       +S+FP FNHFLHFN  NSPFPPP              P   
Sbjct: 75  NHKARQRQKQKQQHHHHHFNSSFPFFNHFLHFNHNNSPFPPP--------------PPPP 134

Query: 129 DHHNNVMLFVDVVCSPYYVHQNDVGLYQQYQNNSMVIQTGGIVKRRSKSERRNCNNNNNI 188
             +N       VVCSPYYVHQNDVGLY QYQNNSMVIQ+GGI  +RSKSERRNC     I
Sbjct: 135 PPNN-------VVCSPYYVHQNDVGLYPQYQNNSMVIQSGGIETKRSKSERRNC----II 194

Query: 189 NINEESAIN-NNLSFQSTETLPLFPTHPTGDLQAGLASPSQP-MAPGSASSGNSADDSAG 248
           NINEES IN NNLS+Q+TETL LFPTHPTGDLQA   SP  P M P SAS   S DDSA 
Sbjct: 195 NINEESTINDNNLSYQTTETLSLFPTHPTGDLQASPQSPPPPSMVPTSASDEISVDDSAH 239

[Close]

BLAST of ClCG03G001630 vs. ExPASy TrEMBL
Match: A0A6J1E0T1 (WUSCHEL-related homeobox 2 OS=Momordica charantia OX=3673 GN=LOC111025366 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 4.1e-59
Identity = 139/238 (58.40%), Postives = 157/238 (65.97%), Query Frame = 0


Query: 11  GGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNH 70
           GG P SSRWNPTKEQI ILENLY+QGVRTPSADQI +IT+ LKAYGHIEGKNVFYWFQNH
Sbjct: 12  GGAPASSRWNPTKEQIGILENLYKQGVRTPSADQIHEITNSLKAYGHIEGKNVFYWFQNH 71

Query: 71  KARQRQKQKQHSTFPLFNHFLHFNPNSPFPPPSGSYRNTLEIRFFLPKFKDHHNNVMLFV 130
           KARQRQKQKQ S   LF+HFLHFN N P+  P                            
Sbjct: 72  KARQRQKQKQQS-LALFSHFLHFNSN-PYSSP---------------------------- 131

Query: 131 DVVCSPYYVHQNDVGLYQQYQNNSMVIQTGGIVKRRSKSERRNCNNNNNININEESAINN 190
           +V CSPYYVHQNDVGLY  Y NNS  +Q+ GI +RRSKSERRN N        E SAIN 
Sbjct: 132 NVGCSPYYVHQNDVGLYPPYHNNSKALQSSGIARRRSKSERRNSNGE-----IEVSAINL 191

Query: 191 NLSFQSTETLPLFPTHPTGDLQAGLASPSQPMAPGSASSGNSADDSAGGRRPYFEFFM 249
           N+    TETL LFPTHPTGDLQ G   P  P +  +++  +SA  S+ GR  YF+FF+
Sbjct: 192 NI---QTETLSLFPTHPTGDLQVG---PLPPTSSETSADHSSAGVSSSGRGTYFDFFL 208

[Close]

BLAST of ClCG03G001630 vs. ExPASy TrEMBL
Match: A0A6J1KD41 (WUSCHEL-related homeobox 2-like OS=Cucurbita maxima OX=3661 GN=LOC111493249 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 3.8e-57
Identity = 144/247 (58.30%), Postives = 160/247 (64.78%), Query Frame = 0


Query: 11  GGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNH 70
           GG PVSSRWNPTKEQISILENLY QGVRTPSA+QIQQIT+RLK+YGHIEGKNVFYWFQNH
Sbjct: 8   GGTPVSSRWNPTKEQISILENLYEQGVRTPSAEQIQQITNRLKSYGHIEGKNVFYWFQNH 67

Query: 71  KARQRQKQKQHSTFPL--FNHFLHFNPNSP-FPPPSGSYRNTLEIRFFLPKFKDHHNNVM 130
           KARQRQKQKQ  T  L  FNHFL   P +P FP P                         
Sbjct: 68  KARQRQKQKQDHTATLAYFNHFLPLPPFAPHFPSP------------------------- 127

Query: 131 LFVDVVCSPYYVHQNDVGLYQQYQNNSMVIQTGGIVKRRSKSERRNCNNNNNININEESA 190
              +VVCSPYYVHQN+VG+Y   Q+NS          RRS SERR+C NN       +S 
Sbjct: 128 ---NVVCSPYYVHQNNVGVYPHQQSNS--------TTRRSNSERRSCTNNPGFGY--QSC 187

Query: 191 INNNLSFQSTETLPLFPTHPTGDLQAGLASPS----QPMAPGSA--SSGNSADDSAGGRR 249
             +N    +T+TLPLFPTHPTGDLQ G   PS    Q MA  SA  SSG SAD+S+GG R
Sbjct: 188 QTDN---PATQTLPLFPTHPTGDLQVGPPPPSPLPPQAMASASASSSSGMSADESSGGCR 213

[Close]

BLAST of ClCG03G001630 vs. ExPASy TrEMBL
Match: A0A5J5C598 (Homeobox domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_000934 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.0e-42
Identity = 121/260 (46.54%), Postives = 147/260 (56.54%), Query Frame = 0


Query: 11  GGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNH 70
           GG P SSRWNPTKEQIS+LENLYRQG+RTPSA+QIQQITSRLKAYGHIEGKNVFYWFQNH
Sbjct: 12  GGAPASSRWNPTKEQISMLENLYRQGIRTPSAEQIQQITSRLKAYGHIEGKNVFYWFQNH 71

Query: 71  KARQRQKQKQHSTFPLFNHFLHFNPNSPFPPPSGSYRNTLEIRFFLPKFKDHHNNVMLFV 130
           KARQRQKQKQ +    ++ +LH N +  FPP                             
Sbjct: 72  KARQRQKQKQEN-MAYYSRYLH-NSSPVFPP---------------------------CP 131

Query: 131 DVVCSPYYVHQNDVGLYQQYQNNSMVIQTGGIVKRRSKSERRNCN---------NNNNIN 190
            VVCSPYY+ QND+G Y  Y     V+  GGI +R S  +    N         ++   N
Sbjct: 132 TVVCSPYYLPQNDLGFYPHYPK---VLLPGGIKRRPSPDKMEKTNTCVGAGYEPSHLRYN 191

Query: 191 I-------NEESAINNNLSFQSTETLPLFPTHPTGDLQAGLASPSQPMAPG-------SA 248
           +         E+A+NNN +  S  TLPLFP  PTG LQA   + S  ++         S+
Sbjct: 192 VMMHTAGDKNEAAMNNNCN-TSQATLPLFPLQPTGILQARTTNNSSLVSTSAENSTTPSS 238

[Close]

BLAST of ClCG03G001630 vs. ExPASy TrEMBL
Match: M1CZ36 (WOX2 OS=Solanum tuberosum OX=4113 GN=102585727 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.0e-42
Identity = 109/203 (53.69%), Postives = 128/203 (63.05%), Query Frame = 0


Query: 11  GGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNH 70
           GG PV  RWNPTKEQI +LE+LY+QG+RTPSA+QIQQIT RL+A+GHIEGKNVFYWFQNH
Sbjct: 14  GGTPVGCRWNPTKEQIDLLESLYKQGIRTPSAEQIQQITGRLRAFGHIEGKNVFYWFQNH 73

Query: 71  KARQRQKQKQHSTFPLFNHFLHFNPNSPFPPPSGSYRNTLEIRFFLPKFKDHHNNVMLFV 130
           KARQRQKQKQ   F  +N FLH    S FPPP+                           
Sbjct: 74  KARQRQKQKQ-DKFAYYNRFLH--RTSVFPPPN-------------------------CP 133

Query: 131 DVVCSPYYVHQNDVGLYQQYQNNSMVIQTGGIVKRRSKSERRNCNNNNNININEESAINN 190
           +VVCSPYY  QN++G YQQY   SM+I   G  KRR+      C N   +N+ E++ I N
Sbjct: 134 NVVCSPYYTAQNNLGFYQQYP--SMIIPGPGGFKRRA-----TC-NQETLNLCEQNNITN 180

Query: 191 -NLSFQSTETLPLFPTHPTGDLQ 213
            N  F + ETL LFP HPTG LQ
Sbjct: 194 ANKEFINQETLNLFPLHPTGVLQ 180

[Close]

BLAST of ClCG03G001630 vs. TAIR 10
Match: AT5G59340.1 (WUSCHEL related homeobox 2 )

HSP 1 Score: 150.6 bits (379), Expect = 1.7e-36
Identity = 107/255 (41.96%), Postives = 136/255 (53.33%), Query Frame = 0


Query: 12  GPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNHK 71
           G   SSRWNPTK+QI++LENLY++G+RTPSADQIQQIT RL+AYGHIEGKNVFYWFQNHK
Sbjct: 8   GTASSSRWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHK 67

Query: 72  ARQRQKQKQHSTFPLFNHFLHFNPNSPFPPPSGSYRNTLEIRFFLPKFKDHHNNVMLFVD 131
           ARQRQKQKQ      FN  LH      +PPP  +        ++L +  DHH N      
Sbjct: 68  ARQRQKQKQ-ERMAYFNRLLHKTSRFFYPPPCSNVGCVSP--YYLQQASDHHMNQH---G 127

Query: 132 VVCSPYYVHQNDV----GLYQ-----QYQNNSMVIQTGGIVKRRSKSE---------RRN 191
            V +   +H+N+V    G Y+     Q+Q     I+T    +               R N
Sbjct: 128 SVYTNDLLHRNNVMIPSGGYEKRTVTQHQKQLSDIRTTAATRMPISPSSLRFDRFALRDN 187

Query: 192 CNNNNNININEESAINNNLSFQSTETLPLFPTHPTGDLQA-GLASPSQPMAPGSASSGNS 248
           C    +IN+N              +TLPLFP  P     A G+ S S   A GS S  + 
Sbjct: 188 CYAGEDINVNS----------SGRKTLPLFPLQPLNASNADGMGSSS--FALGSDSPVDC 244

[Close]

BLAST of ClCG03G001630 vs. TAIR 10
Match: AT3G18010.1 (WUSCHEL related homeobox 1 )

HSP 1 Score: 111.7 bits (278), Expect = 8.6e-25
Identity = 51/70 (72.86%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 13  PP--VSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNH 72
           PP  VSSRWNPT +Q+ +LE LYRQG RTPSAD IQQIT++L+ YG IEGKNVFYWFQNH
Sbjct: 69  PPVMVSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNH 128

Query: 73  KARQRQKQKQ 81
           KAR+RQK+++
Sbjct: 129 KARERQKRRR 138

[Close]

BLAST of ClCG03G001630 vs. TAIR 10
Match: AT1G46480.1 (WUSCHEL related homeobox 4 )

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-22
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 14  PVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNHKAR 73
           P  +RWNPT+EQI ILE LY+ G+RTP+A QI+ IT +L  YG IEGKNVFYWFQNHKAR
Sbjct: 86  PGGTRWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKAR 145

Query: 74  QRQKQKQHSTFPL 87
           +RQKQK+++   L
Sbjct: 146 ERQKQKRNNLISL 158

[Close]

BLAST of ClCG03G001630 vs. TAIR 10
Match: AT2G01500.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-21
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 18  RWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNHKARQRQK 77
           RWNPT EQI+ LE LYR G RTP+ +QIQQI S+L+ YG IEGKNVFYWFQNHKAR+R K
Sbjct: 61  RWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKARERLK 120

Query: 78  QKQ 81
           +++
Sbjct: 121 RRR 123

[Close]

BLAST of ClCG03G001630 vs. TAIR 10
Match: AT2G28610.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 99.0 bits (245), Expect = 5.7e-21
Identity = 59/133 (44.36%), Postives = 73/133 (54.89%), Query Frame = 0


Query: 13  PPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNHKA 72
           P  S+RW PT EQ+ ILE +YR G+RTP+A QIQQIT+ L  YG IEGKNVFYWFQNHKA
Sbjct: 3   PVASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKA 62

Query: 73  RQRQKQKQHSTFPLF--NHFLHFNPNSPFPPPSGSYRNTLEIRFFLPKFKDHHNNVMLFV 132
           R RQK ++     L    H L        P P  S  +    +  +    DHHN      
Sbjct: 63  RDRQKLRKKLAKQLHQQQHQLQLQLQQIKPKPISSMISQPVNKNII----DHHN------ 120

Query: 133 DVVCSPYYVHQND 144
                PY+ H ++
Sbjct: 123 -----PYHHHHHN 120

The following BLAST results are available for this feature:

BLAST of ClCG03G001630 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65708.1	4.2e-82	72.00	hypothetical protein Csa_019930 [Cucumis sativus]	[more]
XP_022158904.1	8.5e-59	58.40	WUSCHEL-related homeobox 2 [Momordica charantia]	[more]
XP_022998665.1	8.0e-57	58.30	WUSCHEL-related homeobox 2-like [Cucurbita maxima]	[more]
XP_031742465.1	4.4e-55	57.44	WUSCHEL-related homeobox 2 [Cucumis sativus]	[more]
KAG6607233.1	1.4e-53	57.03	Inner membrane protein ALBINO3, chloroplastic, partial [Cucurbita argyrosperma s...	[more]

BLAST of ClCG03G001630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6X7K1	2.3e-35	41.96	WUSCHEL-related homeobox 2 OS=Arabidopsis thaliana OX=3702 GN=WOX2 PE=2 SV=1	[more]
A2WWU7	4.9e-25	33.76	WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. indica OX=39946 GN=WOX5 PE=3 S...	[more]
Q8LR86	4.9e-25	33.76	WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX5 PE=2...	[more]
Q6X7K0	1.2e-23	72.86	WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana OX=3702 GN=WOX1 PE=2 SV=2	[more]
Q6X7J9	1.5e-21	65.75	WUSCHEL-related homeobox 4 OS=Arabidopsis thaliana OX=3702 GN=WOX4 PE=1 SV=1	[more]

BLAST of ClCG03G001630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVA9	2.0e-82	72.00	Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G505930 PE...	[more]
A0A6J1E0T1	4.1e-59	58.40	WUSCHEL-related homeobox 2 OS=Momordica charantia OX=3673 GN=LOC111025366 PE=3 S...	[more]
A0A6J1KD41	3.8e-57	58.30	WUSCHEL-related homeobox 2-like OS=Cucurbita maxima OX=3661 GN=LOC111493249 PE=3...	[more]
A0A5J5C598	6.0e-42	46.54	Homeobox domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_000934 P...	[more]
M1CZ36	6.0e-42	53.69	WOX2 OS=Solanum tuberosum OX=4113 GN=102585727 PE=3 SV=1	[more]

BLAST of ClCG03G001630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59340.1	1.7e-36	41.96	WUSCHEL related homeobox 2	[more]
AT3G18010.1	8.6e-25	72.86	WUSCHEL related homeobox 1	[more]
AT1G46480.1	1.0e-22	65.75	WUSCHEL related homeobox 4	[more]
AT2G01500.1	1.5e-21	69.84	Homeodomain-like superfamily protein	[more]
AT2G28610.1	5.7e-21	44.36	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 14..81 e-value: 2.3E-6 score: 37.1
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 17..76 e-value: 3.9E-19 score: 68.2
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 12..77 score: 10.883665
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 18..78 e-value: 8.82611E-7 score: 43.0009
None	No IPR available	GENE3D	1.10.10.60		coord: 16..83 e-value: 3.7E-10 score: 41.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..235
None	No IPR available	PANTHER	PTHR45940:SF6	TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED	coord: 3..122
None	No IPR available	PANTHER	PTHR45940:SF6	TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED	coord: 128..247
IPR044555	Protein WUSCHEL-like	PANTHER	PTHR45940	WUSCHEL-RELATED HOMEOBOX 1-RELATED	coord: 128..247 coord: 3..122
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 15..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G001630.2	ClCG03G001630.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0099402	plant organ development
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity