ClCG03G001520 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTTTTCCGATCATCTTCCTACCGGCAACCTTCAACGTTATTGCCATCCCCGCCACCTCCGCCGTTGTCGGAGTTTATGAGTTCCCATATTTCCCACCAGAAGATGGGATTCCTGTTGGTAGGCGTCATTATTCTCGTCGTATTTTTATTCATCTTCCTTTTTCATTACTACCAATACCAACTTAGGCTGTACCAAACAAGAACCCTAGACATCGAGCAACGACTCCATGAAAATCATGCAGCACGACTCTTTGCTCGGCTTCAAGCCGAAATTATACGGCAACAGCAGGCAGCGCAACCAAACGCAGCGGAGCATGAAGAAACCTCCTCGGCTACCATGACGGTCGCTTACAAAGACGTGATCGAGACGTCGGACAAAGCCGATTGCTGTGCCATTTGCATTGAAGGGTTTGAGGAGGAAGAGATTTGTGGAGTTGTTGAGAGTTGTGCCCATTGTTTTCATAAGGATTGTATAGACCAATGGCTGAGGATTGAGAGACGTTGCCCATTGTGCCGC ATGCCTTTTCCGATCATCTTCCTACCGGCAACCTTCAACGTTATTGCCATCCCCGCCACCTCCGCCGTTGTCGGAGTTTATGAGTTCCCATATTTCCCACCAGAAGATGGGATTCCTGTTGCACGACTCTTTGCTCGGCTTCAAGCCGAAATTATACGGCAACAGCAGGCAGCGCAACCAAACGCAGCGGAGCATGAAGAAACCTCCTCGGCTACCATGACGGTCGCTTACAAAGACGTGATCGAGACGTCGGACAAAGCCGATTGCTGTGCCATTTGCATTGAAGGGTTTGAGGAGGAAGAGATTTGTGGAGTTGTTGAGAGTTGTGCCCATTGTTTTCATAAGGATTGTATAGACCAATGGCTGAGGATTGAGAGACGTTGCCCATTGTGCCGC ATGCCTTTTCCGATCATCTTCCTACCGGCAACCTTCAACGTTATTGCCATCCCCGCCACCTCCGCCGTTGTCGGAGTTTATGAGTTCCCATATTTCCCACCAGAAGATGGGATTCCTGTTGCACGACTCTTTGCTCGGCTTCAAGCCGAAATTATACGGCAACAGCAGGCAGCGCAACCAAACGCAGCGGAGCATGAAGAAACCTCCTCGGCTACCATGACGGTCGCTTACAAAGACGTGATCGAGACGTCGGACAAAGCCGATTGCTGTGCCATTTGCATTGAAGGGTTTGAGGAGGAAGAGATTTGTGGAGTTGTTGAGAGTTGTGCCCATTGTTTTCATAAGGATTGTATAGACCAATGGCTGAGGATTGAGAGACGTTGCCCATTGTGCCGC MPFPIIFLPATFNVIAIPATSAVVGVYEFPYFPPEDGIPVARLFARLQAEIIRQQQAAQPNAAEHEETSSATMTVAYKDVIETSDKADCCAICIEGFEEEEICGVVESCAHCFHKDCIDQWLRIERRCPLCR Homology
BLAST of ClCG03G001520 vs. NCBI nr
Match: KAA0067736.1 (RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]) HSP 1 Score: 118.6 bits (296), Expect = 4.0e-23 Identity = 62/94 (65.96%), Postives = 69/94 (73.40%), Query Frame = 0
BLAST of ClCG03G001520 vs. NCBI nr
Match: XP_022970384.1 (RING-H2 finger protein ATL64-like [Cucurbita maxima]) HSP 1 Score: 118.2 bits (295), Expect = 5.2e-23 Identity = 61/98 (62.24%), Postives = 72/98 (73.47%), Query Frame = 0
BLAST of ClCG03G001520 vs. NCBI nr
Match: KAG6583431.1 (RING-H2 finger protein ATL5, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 118.2 bits (295), Expect = 5.2e-23 Identity = 61/98 (62.24%), Postives = 71/98 (72.45%), Query Frame = 0
BLAST of ClCG03G001520 vs. NCBI nr
Match: XP_023520574.1 (RING-H2 finger protein ATL64-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 117.5 bits (293), Expect = 8.9e-23 Identity = 59/98 (60.20%), Postives = 72/98 (73.47%), Query Frame = 0
BLAST of ClCG03G001520 vs. NCBI nr
Match: KAG7019192.1 (E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 117.5 bits (293), Expect = 8.9e-23 Identity = 60/98 (61.22%), Postives = 71/98 (72.45%), Query Frame = 0
BLAST of ClCG03G001520 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09 Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 0
BLAST of ClCG03G001520 vs. ExPASy Swiss-Prot
Match: P87237 (Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC4G3.12c PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 8.4e-08 Identity = 31/76 (40.79%), Postives = 41/76 (53.95%), Query Frame = 0
BLAST of ClCG03G001520 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.1e-07 Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 0
BLAST of ClCG03G001520 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 2.4e-07 Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 0
BLAST of ClCG03G001520 vs. ExPASy Swiss-Prot
Match: Q84W40 (RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2) HSP 1 Score: 56.2 bits (134), Expect = 3.2e-07 Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 0
BLAST of ClCG03G001520 vs. ExPASy TrEMBL
Match: A0A5A7VMH1 (RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00560 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 1.9e-23 Identity = 62/94 (65.96%), Postives = 69/94 (73.40%), Query Frame = 0
BLAST of ClCG03G001520 vs. ExPASy TrEMBL
Match: A0A6J1I5C3 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469386 PE=3 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23 Identity = 61/98 (62.24%), Postives = 72/98 (73.47%), Query Frame = 0
BLAST of ClCG03G001520 vs. ExPASy TrEMBL
Match: A0A5D3BE50 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002270 PE=3 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 9.6e-23 Identity = 61/94 (64.89%), Postives = 68/94 (72.34%), Query Frame = 0
BLAST of ClCG03G001520 vs. ExPASy TrEMBL
Match: A0A1S4E1K2 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC107991538 PE=3 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 9.6e-23 Identity = 61/94 (64.89%), Postives = 68/94 (72.34%), Query Frame = 0
BLAST of ClCG03G001520 vs. ExPASy TrEMBL
Match: A0A6J1HJU0 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742 PE=3 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21 Identity = 62/98 (63.27%), Postives = 71/98 (72.45%), Query Frame = 0
BLAST of ClCG03G001520 vs. TAIR 10
Match: AT3G11110.1 (RING/U-box superfamily protein ) HSP 1 Score: 64.3 bits (155), Expect = 8.3e-11 Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 0
BLAST of ClCG03G001520 vs. TAIR 10
Match: AT5G53110.1 (RING/U-box superfamily protein ) HSP 1 Score: 60.8 bits (146), Expect = 9.2e-10 Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 0
BLAST of ClCG03G001520 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein ) HSP 1 Score: 57.8 bits (138), Expect = 7.8e-09 Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 0
BLAST of ClCG03G001520 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein ) HSP 1 Score: 57.4 bits (137), Expect = 1.0e-08 Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 0
BLAST of ClCG03G001520 vs. TAIR 10
Match: AT3G43430.1 (RING/U-box superfamily protein ) HSP 1 Score: 56.6 bits (135), Expect = 1.7e-08 Identity = 31/89 (34.83%), Postives = 48/89 (53.93%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|