ClCG03G001500 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G001500
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	RING-type domain-containing protein
Location	CG_Chr03: 1498090 .. 1498515 (+)
RNA-Seq Expression	ClCG03G001500
Synteny	ClCG03G001500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCGCCAATTTTTTCTTCCCTAACTATCTTTCCACCATCAATACAGCCGCCGCCGTCGCGGCCGTCATCGTTTGTACTTTCTCCATTCGTTGAGTATATAGCTGTGGTGTCCATGTTTCTCCTTTTTCTACTATGTTTCTACATTGCCACTTTGTGTAGCGAAAGAGCCACCAAATCTAACCGCAAAAACTTGGTAGAGACTCTGCAGATTGAAGCGCCGGATTTCAGTTATAGCAAACACGACGGCGGTGAAACAGAATGTGTGATTTGCCTTTGCGAAATTAAAGAAGGGGAGAAGTGTAGAAAAATGAGCACGTGTGATCACGTGTTTCATAGGGACTGCATTGACCAGTGGTTTACGGTGGACCGCCACTGTCCCCTCTGCCGGACCGCCGTTTGTGTGGTGGTTGTTGAAAAATAG

mRNA sequence

ATGGCATCGCCAATTTTTTCTTCCCTAACTATCTTTCCACCATCAATACAGCCGCCGCCGTCGCGGCCGTCATCGTTTGTACTTTCTCCATTCGTTGAGTATATAGCTGTGGTGTCCATGTTTCTCCTTTTTCTACTATGTTTCTACATTGCCACTTTGTGTAGCGAAAGAGCCACCAAATCTAACCGCAAAAACTTGGTAGAGACTCTGCAGATTGAAGCGCCGGATTTCAGTTATAGCAAACACGACGGCGGTGAAACAGAATGTGTGATTTGCCTTTGCGAAATTAAAGAAGGGGAGAAGTGTAGAAAAATGAGCACGTGTGATCACGTGTTTCATAGGGACTGCATTGACCAGTGGTTTACGGTGGACCGCCACTGTCCCCTCTGCCGGACCGCCGTTTGTGTGGTGGTTGTTGAAAAATAG

Coding sequence (CDS)

ATGGCATCGCCAATTTTTTCTTCCCTAACTATCTTTCCACCATCAATACAGCCGCCGCCGTCGCGGCCGTCATCGTTTGTACTTTCTCCATTCGTTGAGTATATAGCTGTGGTGTCCATGTTTCTCCTTTTTCTACTATGTTTCTACATTGCCACTTTGTGTAGCGAAAGAGCCACCAAATCTAACCGCAAAAACTTGGTAGAGACTCTGCAGATTGAAGCGCCGGATTTCAGTTATAGCAAACACGACGGCGGTGAAACAGAATGTGTGATTTGCCTTTGCGAAATTAAAGAAGGGGAGAAGTGTAGAAAAATGAGCACGTGTGATCACGTGTTTCATAGGGACTGCATTGACCAGTGGTTTACGGTGGACCGCCACTGTCCCCTCTGCCGGACCGCCGTTTGTGTGGTGGTTGTTGAAAAATAG

Protein sequence

MASPIFSSLTIFPPSIQPPPSRPSSFVLSPFVEYIAVVSMFLLFLLCFYIATLCSERATKSNRKNLVETLQIEAPDFSYSKHDGGETECVICLCEIKEGEKCRKMSTCDHVFHRDCIDQWFTVDRHCPLCRTAVCVVVVEK

Homology

[Close]

BLAST of ClCG03G001500 vs. NCBI nr
Match: XP_011659858.1 (E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 3.2e-34
Identity = 72/129 (55.81%), Postives = 94/129 (72.87%), Query Frame = 0


Query: 13  PPSIQPPPSRPSSFVLSPFVEYIAVVSMFLLFLLCFYIATLCSERATKSNRKNLVETLQI 72
           P S  P P   S  +L  F   +  +SM LL +L  +IA LC++R+ KS+R+ L E L I
Sbjct: 2   PLSPSPLPPLHSPILLPGFFMVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLDI 61

Query: 73  EAPDFSYSKHDGGETECVICLCEIKEGEKCRKMSTCDHVFHRDCIDQWFTVDRHCPLCRT 132
           EAP F Y++ +GGE EC ICLCEI+EGEKCRKM TC HVFH+DCID+WF V+ HCP+CRT
Sbjct: 62  EAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRT 121

Query: 133 AVCVVVVEK 142
           +VCVVV+++
Sbjct: 122 SVCVVVIDR 130

[Close]

BLAST of ClCG03G001500 vs. NCBI nr
Match: XP_038895796.1 (RING-H2 finger protein ATL40-like [Benincasa hispida])

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-33
Identity = 78/145 (53.79%), Postives = 107/145 (73.79%), Query Frame = 0


Query: 1   MASPIFSSL-TIFPPSI-----QPPPSRPSSFVLSPF-VEYIAVVSMFLLFLLCFYIATL 60
           M  PIFS+  TIFP SI       PP  PS  +L  +  EY+A V + LLF++  Y+  +
Sbjct: 1   MPLPIFSAFPTIFPASIPSIPSPSPPWSPSWSLLEVYPYEYLAAVFILLLFIVYIYLVII 60

Query: 61  CSERATKSNRKNLVETLQIEAPDFSYSKHDGGETECVICLCEIKEGEKCRKMSTCDHVFH 120
            ++RA +S+++ L+ET++ EAP FSYS+ DGG+ ECVICLC+I++ EKCR+M+TC+HVFH
Sbjct: 61  FNKRADRSDKEELLETVETEAPVFSYSE-DGGDKECVICLCQIEKEEKCRRMNTCNHVFH 120

Query: 121 RDCIDQWFTVDRHCPLCRTAVCVVV 139
           +DCIDQWF V+ HCPLCRT +CVVV
Sbjct: 121 KDCIDQWFMVEHHCPLCRTVICVVV 144

[Close]

BLAST of ClCG03G001500 vs. NCBI nr
Match: XP_038895792.1 (E3 ubiquitin-protein ligase ATL41-like [Benincasa hispida])

HSP 1 Score: 152.5 bits (384), Expect = 2.7e-33
Identity = 69/90 (76.67%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 52  TLCSERATKSNRKNLVETLQIEAPDFSYSKHDGGETECVICLCEIKEGEKCRKMSTCDHV 111
           TL  ER  KS+RK L+ETL+IE PDF Y K D GE ECVICL EI+EGEKCR+MS CDHV
Sbjct: 49  TLLFERTPKSDRKKLLETLKIEVPDFDYGKDDEGEKECVICLREIEEGEKCRRMSMCDHV 108

Query: 112 FHRDCIDQWFTVDRHCPLCRTAVCVVVVEK 142
           FHRDCID+WF VD HCPLCRTAVCVVVVEK
Sbjct: 109 FHRDCIDRWFMVDPHCPLCRTAVCVVVVEK 138

[Close]

BLAST of ClCG03G001500 vs. NCBI nr
Match: XP_011648512.2 (RING-H2 finger protein ATL79 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 3.9e-32
Identity = 71/129 (55.04%), Postives = 91/129 (70.54%), Query Frame = 0


Query: 13  PPSIQPPPSRPSSFVLSPFVEYIAVVSMFLLFLLCFYIATLCSERATKSNRKNLVETLQI 72
           P S  P P   S  +L  F   +  VSM LL +L  +IA LC++R+ KS+ +   E L I
Sbjct: 2   PLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSENLDI 61

Query: 73  EAPDFSYSKHDGGETECVICLCEIKEGEKCRKMSTCDHVFHRDCIDQWFTVDRHCPLCRT 132
           EAP F YS  +G E ECVICLCEI+EGEKCRKM TC HVFH+DCID+WF V+ HCP+CRT
Sbjct: 62  EAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRT 121

Query: 133 AVCVVVVEK 142
           +VC+VV+++
Sbjct: 122 SVCMVVIDR 130

[Close]

BLAST of ClCG03G001500 vs. NCBI nr
Match: KAE8653244.1 (hypothetical protein Csa_019886, partial [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 5.0e-32
Identity = 68/127 (53.54%), Postives = 90/127 (70.87%), Query Frame = 0


Query: 15  SIQPPPSRPSSFVLSPFVEYIAVVSMFLLFLLCFYIATLCSERATKSNRKNLVETLQIEA 74
           S  P PS  S  +L  ++E + + SMFL  +L  +I+ LC +R+ KS+ +   E + IEA
Sbjct: 4   SPSPLPSLHSLILLPRYIEDLLMASMFLSIVLLLFISILCRKRSAKSDVEEFPENVDIEA 63

Query: 75  PDFSYSKHDGGETECVICLCEIKEGEKCRKMSTCDHVFHRDCIDQWFTVDRHCPLCRTAV 134
           P F Y   +GGE +C ICLCEI+EGEKCRKM TC HVFH+DCI +WF VD HCP+CRT+V
Sbjct: 64  PIFHYGGDEGGEQDCAICLCEIEEGEKCRKMKTCGHVFHKDCIGRWFKVDGHCPICRTSV 123

Query: 135 CVVVVEK 142
           CVVVV++
Sbjct: 124 CVVVVDR 130

[Close]

BLAST of ClCG03G001500 vs. ExPASy Swiss-Prot
Match: Q9ZV51 (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.3e-13
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 0


Query: 13  PPSIQP--PPSRPSSFVLSPFVEYIAVVSMFLLFLLCFYIATLC-----------SERAT 72
           PPS  P  PP +P + +LS F+  + + S+F LFL+   IA++              R  
Sbjct: 13  PPSTTPSHPPPKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPLLLSSLHRHHRRR 72

Query: 73  KSNRK-----NLVETLQIEAPDFSYSK---HDGGETECVICLCEIKEGEKCRKMSTCDHV 132
           + NR+      L      + P F +S+   +   E++CV+C    ++G+ CR +  C HV
Sbjct: 73  RRNRRQESSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHV 132

Query: 133 FHRDCIDQWFTVDRHCPLCRTAV 135
           FHR C+D W      CP+CR  V
Sbjct: 133 FHRKCVDTWLLKASTCPICRARV 155

[Close]

BLAST of ClCG03G001500 vs. ExPASy Swiss-Prot
Match: Q9SLC3 (E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-11
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 63  RKNLVETLQIEAPDFSYSKHDG---GETECVICLCEIKEGEKCRKMSTCDHVFHRDCIDQ 122
           ++ L  T+    P F+    DG     TEC +CL  +KE +K R++  C H+FH DC+D 
Sbjct: 79  KRGLNPTVIASLPTFTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDT 138

Query: 123 WFTVDRHCPLCRTAV 135
           W T    CP+CRT V
Sbjct: 139 WLTTCSTCPVCRTEV 153

[Close]

BLAST of ClCG03G001500 vs. ExPASy Swiss-Prot
Match: Q9LUL6 (Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-10
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 88  ECVICLCEIKEGEKCRKMSTCDHVFHRDCIDQWFTVDRHCPLCRTAVCV 137
           ECV+CL E+ +G+K R + +CDH FH +CID W   +  CP+CR  VC+
Sbjct: 87  ECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVCL 135

[Close]

BLAST of ClCG03G001500 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.3e-10
Identity = 32/78 (41.03%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 59  TKSNRKNLVETLQIEAPDFSYS--KHDGGETECVICLCEIKEGEKCRKMSTCDHVFHRDC 118
           + S+   L  T+  + P F YS   H+    EC +CL E +E ++ R +  C HVFH DC
Sbjct: 81  SSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDC 140

Query: 119 IDQWFTVDRHCPLCRTAV 135
           ID WF     CPLCR  V
Sbjct: 141 IDTWFRSRSSCPLCRAPV 158

[Close]

BLAST of ClCG03G001500 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.6e-10
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 84  GGETECVICLCEIKEGEKCRKMSTCDHVFHRDCIDQWFTVDRHCPLCRTA 134
           GG+T C ICLCE KE E  R M  C H FH  C+D W  ++  CP+CR +
Sbjct: 133 GGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNS 182

[Close]

BLAST of ClCG03G001500 vs. ExPASy TrEMBL
Match: A0A0A0LY10 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G514470 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.4e-32
Identity = 68/127 (53.54%), Postives = 90/127 (70.87%), Query Frame = 0


Query: 15  SIQPPPSRPSSFVLSPFVEYIAVVSMFLLFLLCFYIATLCSERATKSNRKNLVETLQIEA 74
           S  P PS  S  +L  ++E + + SMFL  +L  +I+ LC +R+ KS+ +   E + IEA
Sbjct: 4   SPSPLPSLHSLILLPRYIEDLLMASMFLSIVLLLFISILCRKRSAKSDVEEFPENVDIEA 63

Query: 75  PDFSYSKHDGGETECVICLCEIKEGEKCRKMSTCDHVFHRDCIDQWFTVDRHCPLCRTAV 134
           P F Y   +GGE +C ICLCEI+EGEKCRKM TC HVFH+DCI +WF VD HCP+CRT+V
Sbjct: 64  PIFHYGGDEGGEQDCAICLCEIEEGEKCRKMKTCGHVFHKDCIGRWFKVDGHCPICRTSV 123

Query: 135 CVVVVEK 142
           CVVVV++
Sbjct: 124 CVVVVDR 130

[Close]

BLAST of ClCG03G001500 vs. ExPASy TrEMBL
Match: A0A0A0K790 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.2e-32
Identity = 78/141 (55.32%), Postives = 96/141 (68.09%), Query Frame = 0


Query: 1   MASP-IFSSLTIFPPSIQPPPSRPSSFVLSPFVEYIAVVSMFLLFLLCFYIATLCSERAT 60
           M+SP I  SL    PS  P PS  S  +L  F+  +  V M LL +L  +I  LC +R+ 
Sbjct: 1   MSSPNILPSLMPLSPS--PIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSA 60

Query: 61  KSNRKNLVETLQIEAPDFSYSKHDGGETECVICLCEIKEGEKCRKMSTCDHVFHRDCIDQ 120
           KS+ + L E L IEAP F Y+  +G E EC ICLCEI+EGEKCRKM TC HVFH+DCID+
Sbjct: 61  KSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDR 120

Query: 121 WFTVDRHCPLCRTAVCVVVVE 141
           WF VD HCP+CRT+VCVVVV+
Sbjct: 121 WFKVDGHCPICRTSVCVVVVD 139

[Close]

BLAST of ClCG03G001500 vs. ExPASy TrEMBL
Match: A0A5D3BG26 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002250 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.1e-31
Identity = 75/139 (53.96%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 1   MASPIFSSLTI-FPPSIQPPPSRPSSFVLSPFVEYIAVVSMFLLFLLCFYIATLCSERAT 60
           M+SPI     +  PPS  PP   P   VL   +E + ++SMFLL +L   IA LC +R+ 
Sbjct: 1   MSSPILLPFLLPLPPSPLPPLHSP--IVLPRSIEDLLMLSMFLLLVLILVIAILCGKRSA 60

Query: 61  KSNRKNLVETLQIEAPDFSYSKHDGGETECVICLCEIKEGEKCRKMSTCDHVFHRDCIDQ 120
           KS+ K L + L I+AP F Y      E EC ICLCEI+EGEKCRKM TC H FH+DCID+
Sbjct: 61  KSDEKELSKNLNIQAPIFHYGIDGDDEQECAICLCEIEEGEKCRKMKTCGHAFHKDCIDR 120

Query: 121 WFTVDRHCPLCRTAVCVVV 139
           WFTV+ HCPLCRT+ CVVV
Sbjct: 121 WFTVELHCPLCRTSGCVVV 137

[Close]

BLAST of ClCG03G001500 vs. ExPASy TrEMBL
Match: A0A1S3C741 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103497233 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.1e-31
Identity = 75/139 (53.96%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 1   MASPIFSSLTI-FPPSIQPPPSRPSSFVLSPFVEYIAVVSMFLLFLLCFYIATLCSERAT 60
           M+SPI     +  PPS  PP   P   VL   +E + ++SMFLL +L   IA LC +R+ 
Sbjct: 1   MSSPILLPFLLPLPPSPLPPLHSP--IVLPRSIEDLLMLSMFLLLVLILVIAILCGKRSA 60

Query: 61  KSNRKNLVETLQIEAPDFSYSKHDGGETECVICLCEIKEGEKCRKMSTCDHVFHRDCIDQ 120
           KS+ K L + L I+AP F Y      E EC ICLCEI+EGEKCRKM TC H FH+DCID+
Sbjct: 61  KSDEKELSKNLNIQAPIFHYGIDGDDEQECAICLCEIEEGEKCRKMKTCGHAFHKDCIDR 120

Query: 121 WFTVDRHCPLCRTAVCVVV 139
           WFTV+ HCPLCRT+ CVVV
Sbjct: 121 WFTVELHCPLCRTSGCVVV 137

[Close]

BLAST of ClCG03G001500 vs. ExPASy TrEMBL
Match: A0A5A7VRG5 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00590 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.7e-31
Identity = 77/139 (55.40%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 1   MASPI-FSSLTIFPPSIQPPPSRPSSFVLSPFVEYIAVVSMFLLFLLCFYIATLCSERAT 60
           M+SPI   SL   PPS  P P   SS VL   +E + ++SM LLF+L   IA LC  R  
Sbjct: 1   MSSPILLPSLLPLPPS--PLPPLHSSIVLPRSIEDLLMLSMVLLFVLLLVIAILCGRRFA 60

Query: 61  KSNRKNLVETLQIEAPDFSYSKHDGGETECVICLCEIKEGEKCRKMSTCDHVFHRDCIDQ 120
           KS+ + L + L I+A  F Y      E EC ICLCEI+EGEKCRKM TC H FH+DCID+
Sbjct: 61  KSDEEELSKNLDIQASVFHYGVDGDDEQECAICLCEIEEGEKCRKMKTCGHAFHKDCIDR 120

Query: 121 WFTVDRHCPLCRTAVCVVV 139
           WFTV+ HCPLCRT+VCVVV
Sbjct: 121 WFTVELHCPLCRTSVCVVV 137

[Close]

BLAST of ClCG03G001500 vs. TAIR 10
Match: AT2G18670.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 6.6e-14
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 0


Query: 13  PPSIQP--PPSRPSSFVLSPFVEYIAVVSMFLLFLLCFYIATLC-----------SERAT 72
           PPS  P  PP +P + +LS F+  + + S+F LFL+   IA++              R  
Sbjct: 13  PPSTTPSHPPPKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPLLLSSLHRHHRRR 72

Query: 73  KSNRK-----NLVETLQIEAPDFSYSK---HDGGETECVICLCEIKEGEKCRKMSTCDHV 132
           + NR+      L      + P F +S+   +   E++CV+C    ++G+ CR +  C HV
Sbjct: 73  RRNRRQESSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHV 132

Query: 133 FHRDCIDQWFTVDRHCPLCRTAV 135
           FHR C+D W      CP+CR  V
Sbjct: 133 FHRKCVDTWLLKASTCPICRARV 155

[Close]

BLAST of ClCG03G001500 vs. TAIR 10
Match: AT2G42360.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 7.3e-13
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 63  RKNLVETLQIEAPDFSYSKHDG---GETECVICLCEIKEGEKCRKMSTCDHVFHRDCIDQ 122
           ++ L  T+    P F+    DG     TEC +CL  +KE +K R++  C H+FH DC+D 
Sbjct: 79  KRGLNPTVIASLPTFTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDT 138

Query: 123 WFTVDRHCPLCRTAV 135
           W T    CP+CRT V
Sbjct: 139 WLTTCSTCPVCRTEV 153

[Close]

BLAST of ClCG03G001500 vs. TAIR 10
Match: AT3G14320.1 (Zinc finger, C3HC4 type (RING finger) family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-11
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 88  ECVICLCEIKEGEKCRKMSTCDHVFHRDCIDQWFTVDRHCPLCRTAVCV 137
           ECV+CL E+ +G+K R + +CDH FH +CID W   +  CP+CR  VC+
Sbjct: 87  ECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVCL 135

[Close]

BLAST of ClCG03G001500 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-11
Identity = 32/78 (41.03%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 59  TKSNRKNLVETLQIEAPDFSYS--KHDGGETECVICLCEIKEGEKCRKMSTCDHVFHRDC 118
           + S+   L  T+  + P F YS   H+    EC +CL E +E ++ R +  C HVFH DC
Sbjct: 81  SSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDC 140

Query: 119 IDQWFTVDRHCPLCRTAV 135
           ID WF     CPLCR  V
Sbjct: 141 IDTWFRSRSSCPLCRAPV 158

[Close]

BLAST of ClCG03G001500 vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-11
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 84  GGETECVICLCEIKEGEKCRKMSTCDHVFHRDCIDQWFTVDRHCPLCRTA 134
           GG+T C ICLCE KE E  R M  C H FH  C+D W  ++  CP+CR +
Sbjct: 133 GGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNS 182

The following BLAST results are available for this feature:

BLAST of ClCG03G001500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659858.1	3.2e-34	55.81	E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus]	[more]
XP_038895796.1	1.6e-33	53.79	RING-H2 finger protein ATL40-like [Benincasa hispida]	[more]
XP_038895792.1	2.7e-33	76.67	E3 ubiquitin-protein ligase ATL41-like [Benincasa hispida]	[more]
XP_011648512.2	3.9e-32	55.04	RING-H2 finger protein ATL79 [Cucumis sativus]	[more]
KAE8653244.1	5.0e-32	53.54	hypothetical protein Csa_019886, partial [Cucumis sativus]	[more]

BLAST of ClCG03G001500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZV51	9.3e-13	31.47	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1	[more]
Q9SLC3	1.0e-11	40.00	E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 ...	[more]
Q9LUL6	2.5e-10	48.98	Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 P...	[more]
Q9LZJ6	4.3e-10	41.03	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]
O82353	5.6e-10	50.00	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]

BLAST of ClCG03G001500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY10	2.4e-32	53.54	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G514470 PE...	[more]
A0A0A0K790	3.2e-32	55.32	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 P...	[more]
A0A5D3BG26	2.1e-31	53.96	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C741	2.1e-31	53.96	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103497233 PE=3 ...	[more]
A0A5A7VRG5	2.7e-31	55.40	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]

BLAST of ClCG03G001500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18670.1	6.6e-14	31.47	RING/U-box superfamily protein	[more]
AT2G42360.1	7.3e-13	40.00	RING/U-box superfamily protein	[more]
AT3G14320.1	1.8e-11	48.98	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT3G62690.1	3.1e-11	41.03	AtL5	[more]
AT2G46160.1	4.0e-11	50.00	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 89..130 e-value: 6.3E-4 score: 29.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 88..131 e-value: 2.2E-12 score: 47.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 89..131 score: 12.371254
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 66..136 e-value: 1.2E-18 score: 68.1
None	No IPR available	PANTHER	PTHR46539:SF9	RING-H2 FINGER PROTEIN ATL56	coord: 17..137
None	No IPR available	PANTHER	PTHR46539	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 17..137
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 82..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G001500.1	ClCG03G001500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016020	membrane