ClCG03G001410 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G001410
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRab5-interacting
LocationCG_Chr03: 1392201 .. 1396531 (+)
RNA-Seq ExpressionClCG03G001410
SyntenyClCG03G001410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATACAATTATATTGTGGGTATGTCATGTGCAACAAACATTCTTTGAGGCAAAACATGTGCATTGAGAAGAGTTTTATACCATCTAATGCCCACTTTCATACAACTACCTTTTTTCCACCTCAAATGTGTTGTCATTGTGACTCAATAAACTAAGATATTGGTGTAAGAATTCCAACCAATCCTATTTCTGAAATTTTGTTTCATGAGCTAAACTTTCTTTTGGTAATTATTTTGCTTATTTTTTAAATTTTAATTTCTAAATAACTATTTTTTTTTTTTTTTAATTAAAAGTTTCTTTGAGAAATGATTTCAAATTCAAACTATAAATTAAAAAACATAGGTTTTAAAACTTGTTATTGTTTTTAGAATTAGACTCAAAATAAGACAATAAAGTCAATTTTAAGAAATCAAATGGTTATTGATTGGAGCCTAAACATTTTTTTTTTAATTAATACACCTTTCACCCAAACTACCATCATGGGTTGTGAGCATTATGGTTCACAAAATTATTCTCAATTTTTTTTTTATATGGTATTAGTGCTTAGGATCTCCTCCTTCTTGGAATAATAGAGATTTGAACCTTCCACCTCAAAAAAAGTAATACATGTCAATTACTATTAAGCTATGCTCACTTTGGTTATAAGATAATCATTTTGATAGCTCAACGCTTATATAATAATTAATATACAAAATGGATACTTGAAGAATAAGAAAAAAATAATTATCAATATTAAATTCTTATAAATAAAATTTAAATATTACTTTGGTCTATGTACTTTTGGTTTTTGTCCATTATGGTCTCTTTACTTTCAAAATGTTCATTTTGGTCCCTATACTTTCAAAACGTTCATTTTGGTCATTGTACTTTAAAAAAGTGACCAATTTGGTTCATTCATTTGTGTTTTTACTTCATTTTTAAAATGATCACTCATTCAAAATTCAAGACCCAAATGAGCTAAAATTGAAAGGATAATGACCAAAATTAACATTTTGAAAACACAGGAACTAAAATAATAAAATTTAAAAGTATTTGGACCAAAATGAACAAAAATAAAAAATACAGAAATTAAAGTAGTATTTAAATATTATGAATAGGTAATTAATTAAAAAAGTTTTAAGATTTCTTAGTAAATTACAAATAACAACAATTAACAATTAATAGAAATCTTAAAAAAAAAAAAAACAATTAATAGGCAAACTAATAACCATTAAAAAAAATAATTTTGAGAGAGTTTTGATAGGAAATTGAGACAACTGAAATTGAAGTGGGAAGAAAGTGAGAATTGAGATTTTTTTTTTTCTTTAATACTGCAAAATTTAAAACTTACCATAAATACTTGTAGGTTGTAGATCAAGTTTACTCTCATATTTAGTGCAGGTTTAGAATTGATTTTTCTTTTTTAGAAAAATTTCTAGAATTGATTTTTTTTAAAGAAAAATTTTTAAAATTGATTTTGAAATTGTTAAAATCGCTTTTGTTATGTTTAAAATCACTTCAAATTTTGTTTAAACCCTTCAAATATATATTAGTTTAAACCAAATCTTAAAAACTCAAAGACTAAAATGACTAAGTTGAAACATTAAGGACCAAATGCACCTATTATAGAAAACTTAGGGACTAAAAGTTATTTTTTCCTTAAATTTAAAACTTAGAATCAAGTGACTAATCAAATTATCCAATAACTTTTTTTAAATAAGAAAAAATTAGAAAAATTATTATAAACAAAATAGTTTATAATATAGTTTATAATAGTTTTACTCGTTTATTATATTTAAAAAAATTATCACAATAATTTATAATTAAATACCGACTTACTATCAAACTAGTAGATGAAAAAATCAATATATATAATAAAAAAAAGAGAAATAAAAGGGCGAGAATGGGGATATTGACGAGGTGTCGAAATAATGGTCGACATGTCGATATAGAGAATAAACAAAGGCTGGCGGCGGCCATGCGATCGAAGCAGCAAAAAGTTCTTCAGGTTTTAGAGATTGATTTTGCTGACCAATAGTTTCCATTAAAAAAAACTACAATTTCCCATTTCAGATTGGAATCGGATTCATCAAAATTTTGGAAACTTAAAATGGAGAGAGATCTGCAGAAAGCCGTCTCCTGAATTTGTTTATTCGATTCCCTCAATCTCATGCCGTTCTTGTTTCTCCAAAACCCTAGTAGGCGGTAGCATTTCTCATCTTCCCTCTGCATATTCTCTACTGGGTATCTCCAATCTTCCCCAAAATTTTTGATTTCACAGTCGGCATGAAGGACGGGAAATCGATCAAGCTCAATTCTCAGTTGCAGCATCAGAATGGTCACTTGCCGCCGTTCAAATTGGCTAAATTGTTCGATCCGGAGACTTCATGGGATAAGGTTTTCTATAAACTTAGCAGCTTTCTTCTGAATTCTATACTTCACTTTAAGCCCCATGGAAATCCTAATAATTTTCTCTGTTTTGTGGGGCTTTCAAATTGAAGTCTTTATTGCTTCAAGCTCTTGCTTCTTCCGGTGTTGTGAATTTTAACTAATGAAATCTGTGCTTTACCAATCAAGTTTAATGAATTGAGATAGCTTACCATTATCTAGCGTGTACCGTTATGAAGATTGAGTTTCCTGGTTTGCCAAATTTAATATTGAATGTCATTTGTCGGGATGAGCTTAGTTGTAATTGACATGTACTCCTTCTCTTAAAGTCAGCAATTTGATTACTGAATATCATTCTCTTGATAAATGGAAGTGGAAAGAAACCAACACGAGCATAGAACAGACATGTAGTATGTGTTAGTGACTAAGAGGTTTTGCTATTGAATTTCATCCTCTATTGTACTTAAAAGATAATGGAAGGGGAAAGGAAAGCCATGGATGAGAAGGTTTATGATACTTGGTATCTGAAATGAATTAAGTGGAATTATTTTTGTTATTAAAGCTGTGCTTTGGCCTTTGGCTTGAATATTTTCTACAACACAGTTTTGTTCTGTTCAAAATGCAGGATCAACTAGGAGATGTCTTGCATTGGATGAGACAAGCAGTTGCTCTTGTATGTGGGCTACTTTGGGGTTCCATACCTCTGGTTGGAGGAATTTGGTTCATCTTGTAAGTTGCCATTTTTATACTTTTGTTACGCATTATGTGTTTAGAATCTCTCATCTCTTTTAGTGGGCACAGTGTTTCTGAATGAAGCTTTCCCCTACTATCACTTCTGAAAGCATACTAATAATTAATCACTCTAAGCACTGTGAAATGTTTTTAAGTGCTTTAAAACCAAACATTATGAAAATTTTGAAAATGTTTCTAAAAGTACTCCCGAACCACGTTTAATCTTCTGGAATTGGATTGGTGTATGAGTGGTTTTTTACTTCTACTTTCATTAGCAATTCACACGGATTTTCCTCATCTTGATCTTTTTCATTAAGTCAGTCAGTACTTTAAAATGGATCCTAGTCCAATCCATAAATGCATTGCTCCTTGCCTTCCTCTTAAGAGAGAAGATTCAACAAATTGTCTTGTAGTACTATCATTTGAATTAGCATATTTACATACTCATTATGCATGTTACTAAAATGTGTGATGAAATTCCATCATTCAGACATTTGGGTTTAGACAGCTCTGGACAATGGAGTCATTCCTCTATGCATTTTTTGAGTTCTCTATTAAACATTTGTTTTCTTGCACTTGGGAAAACTTTAGTTGATTTTGTGAATTTGGTCTCATTTTCAGATTCTTGGTGATATCAACCACTATGGTATATGGATATTATGCAATGATATTGAAGGTAGACGAAGAAGAATTCGGCGGTCATGGAGTTCTCCTCCAGGAAGGGCTGTTTGCTTCCATAACTCTGTTTCTGGTAATCTAATGGCATCCTTTAACTCTCCCTCTCTGTCTTCTGTTAAATTATAATCTGCATCTTCCTCTTGTGACAATTGCAATTGCTGAGTCTTTTGTTAGTTCAAGTGCTTATTTTCCTTTCTTCTTTGCTGTTCAGCTTATGTGGACCCTCGTTTATAGTTTGGGACATTTCTGATAACGGTTTTGTCATCGTTCTCGAGATCATTGGAGGGAGAGGTTGGTCGCCATAAGTTGCTTGCTTTTTTATTAGTGATTGTGCAGTAGCATGCTGTAATTTAGAAGTGGATTAATTTCATTAGGATTACAACTAACCAAATTTTAGTTGTTATTATTATTGACTCTGTTAAATCCAATTCAAACTTAAAATAATAAAATCTTCAAAGGAGCGGAGTTTTTTCTGTCGATCTATGCATAGCTCAACTGGTTAAGACATGTGTCATCGACCAAAAAAATCGAAAGTTGGAGTGTCAACCTTAT

mRNA sequence

ATGAATACAATTATATTGTGGGCTGGCGGCGGCCATGCGATCGAAGCAGCAAAAAGTTCTTCAGATTGGAATCGGATTCATCAAAATTTTGGAAACTTAAAATGGAGAGAGATCTGCAGAAAGCCGTCTCCTGAATTTGTTTATTCGATTCCCTCAATCTCATGCCGTTCTTGTTTCTCCAAAACCCTAGTAGGCGTCGGCATGAAGGACGGGAAATCGATCAAGCTCAATTCTCAGTTGCAGCATCAGAATGGTCACTTGCCGCCGTTCAAATTGGCTAAATTGTTCGATCCGGAGACTTCATGGGATAAGGTTTTCTATAAACTTAGCAGCTTTCTTCTGAATTCTATACTTCACTTTAAGCCCCATGGAAATCCTAATAATTTTCTCTGTTTTGTGGGGCTTTCAAATTGAAGTCTTTATTGCTTCAAGCTCTTGCTTCTTCCGGTGTTGTGAATTTTAACTAATGAAATCTGTGCTTTACCAATCAAGTTTAATGAATTGAGATAGCTTACCATTATCTAGCGTGTACCGTTATGAAGATTGAGTTTCCTGGTTTGCCAAATTTAATATTGAATGTCATTTGTCGGGATGAGCTTAGTTGTAATTGACATGTACTCCTTCTCTTAAAGTCAGCAATTTGATTACTGAATATCATTCTCTTGATAAATGGAAGTGGAAAGAAACCAACACGAGCATAGAACAGACATGTAGTATGTGTTAGTGACTAAGAGGTTTTGCTATTGAATTTCATCCTCTATTGTACTTAAAAGATAATGGAAGGGGAAAGGAAAGCCATGGATGAGAAGGTTTATGATACTTGGTATCTGAAATGAATTAAGTGGAATTATTTTTGTTATTAAAGCTGTGCTTTGGCCTTTGGCTTGAATATTTTCTACAACACAGTTTTGTTCTGTTCAAAATGCAGGATCAACTAGGAGATGTCTTGCATTGGATGAGACAAGCAGTTGCTCTTGTATGTGGGCTACTTTGGGGTTCCATACCTCTGGTTGGAGGAATTTGGTTCATCTTATTCTTGGTGATATCAACCACTATGGTATATGGATATTATGCAATGATATTGAAGGTAGACGAAGAAGAATTCGGCGGTCATGGAGTTCTCCTCCAGGAAGGGCTGTTTGCTTCCATAACTCTGTTTCTGCTTATGTGGACCCTCGTTTATAGTTTGGGACATTTCTGATAACGGTTTTGTCATCGTTCTCGAGATCATTGGAGGGAGAGGTTGGTCGCCATAAGTTGCTTGCTTTTTTATTAGTGATTGTGCAGTAGCATGCTGTAATTTAGAAGTGGATTAATTTCATTAGGATTACAACTAACCAAATTTTAGTTGTTATTATTATTGACTCTGTTAAATCCAATTCAAACTTAAAATAATAAAATCTTCAAAGGAGCGGAGTTTTTTCTGTCGATCTATGCATAGCTCAACTGGTTAAGACATGTGTCATCGACCAAAAAAATCGAAAGTTGGAGTGTCAACCTTAT

Coding sequence (CDS)

ATGAATACAATTATATTGTGGGCTGGCGGCGGCCATGCGATCGAAGCAGCAAAAAGTTCTTCAGATTGGAATCGGATTCATCAAAATTTTGGAAACTTAAAATGGAGAGAGATCTGCAGAAAGCCGTCTCCTGAATTTGTTTATTCGATTCCCTCAATCTCATGCCGTTCTTGTTTCTCCAAAACCCTAGTAGGCGTCGGCATGAAGGACGGGAAATCGATCAAGCTCAATTCTCAGTTGCAGCATCAGAATGGTCACTTGCCGCCGTTCAAATTGGCTAAATTGTTCGATCCGGAGACTTCATGGGATAAGGTTTTCTATAAACTTAGCAGCTTTCTTCTGAATTCTATACTTCACTTTAAGCCCCATGGAAATCCTAATAATTTTCTCTGTTTTGTGGGGCTTTCAAATTGA

Protein sequence

MNTIILWAGGGHAIEAAKSSSDWNRIHQNFGNLKWREICRKPSPEFVYSIPSISCRSCFSKTLVGVGMKDGKSIKLNSQLQHQNGHLPPFKLAKLFDPETSWDKVFYKLSSFLLNSILHFKPHGNPNNFLCFVGLSN
Homology
BLAST of ClCG03G001410 vs. NCBI nr
Match: XP_038895585.1 (respirasome Complex Assembly Factor 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-11
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0

Query: 68  MKDGKSIKLNSQLQHQNGHLPPFKLAKLFDPETSWDK 105
           MKDGKS K+NSQLQHQNGHLPPFKLAKLFDPETSWDK
Sbjct: 1   MKDGKSTKVNSQLQHQNGHLPPFKLAKLFDPETSWDK 37

BLAST of ClCG03G001410 vs. NCBI nr
Match: XP_038895583.1 (respirasome Complex Assembly Factor 1-like isoform X1 [Benincasa hispida] >XP_038895584.1 respirasome Complex Assembly Factor 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-11
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0

Query: 68  MKDGKSIKLNSQLQHQNGHLPPFKLAKLFDPETSWDK 105
           MKDGKS K+NSQLQHQNGHLPPFKLAKLFDPETSWDK
Sbjct: 1   MKDGKSTKVNSQLQHQNGHLPPFKLAKLFDPETSWDK 37

BLAST of ClCG03G001410 vs. NCBI nr
Match: KAA0067751.1 (Rab5-interacting [Cucumis melo var. makuwa] >TYJ97393.1 Rab5-interacting [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 4.8e-11
Identity = 33/37 (89.19%), Postives = 37/37 (100.00%), Query Frame = 0

Query: 68  MKDGKSIKLNSQLQHQNGHLPPFKLAKLFDPETSWDK 105
           MKDGK++K+NSQLQHQNGHLPPFKLA+LFDPETSWDK
Sbjct: 1   MKDGKTMKVNSQLQHQNGHLPPFKLARLFDPETSWDK 37

BLAST of ClCG03G001410 vs. NCBI nr
Match: XP_008457469.1 (PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 4.8e-11
Identity = 33/37 (89.19%), Postives = 37/37 (100.00%), Query Frame = 0

Query: 68  MKDGKSIKLNSQLQHQNGHLPPFKLAKLFDPETSWDK 105
           MKDGK++K+NSQLQHQNGHLPPFKLA+LFDPETSWDK
Sbjct: 1   MKDGKTMKVNSQLQHQNGHLPPFKLARLFDPETSWDK 37

BLAST of ClCG03G001410 vs. NCBI nr
Match: XP_022998338.1 (uncharacterized protein C20orf24 homolog [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 6.2e-11
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0

Query: 68  MKDGKSIKLNSQLQHQNGHLPPFKLAKLFDPETSWDK 105
           MKDGKSIK+NSQLQHQNGHLPPFKLA LFDPE SWDK
Sbjct: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDK 37

BLAST of ClCG03G001410 vs. ExPASy TrEMBL
Match: A0A5A7VQ84 (Rab5-interacting OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002120 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 33/37 (89.19%), Postives = 37/37 (100.00%), Query Frame = 0

Query: 68  MKDGKSIKLNSQLQHQNGHLPPFKLAKLFDPETSWDK 105
           MKDGK++K+NSQLQHQNGHLPPFKLA+LFDPETSWDK
Sbjct: 1   MKDGKTMKVNSQLQHQNGHLPPFKLARLFDPETSWDK 37

BLAST of ClCG03G001410 vs. ExPASy TrEMBL
Match: A0A1S3C692 (uncharacterized protein C20orf24 homolog OS=Cucumis melo OX=3656 GN=LOC103497150 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 33/37 (89.19%), Postives = 37/37 (100.00%), Query Frame = 0

Query: 68  MKDGKSIKLNSQLQHQNGHLPPFKLAKLFDPETSWDK 105
           MKDGK++K+NSQLQHQNGHLPPFKLA+LFDPETSWDK
Sbjct: 1   MKDGKTMKVNSQLQHQNGHLPPFKLARLFDPETSWDK 37

BLAST of ClCG03G001410 vs. ExPASy TrEMBL
Match: A0A6J1KGG2 (uncharacterized protein C20orf24 homolog OS=Cucurbita maxima OX=3661 GN=LOC111493006 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.0e-11
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0

Query: 68  MKDGKSIKLNSQLQHQNGHLPPFKLAKLFDPETSWDK 105
           MKDGKSIK+NSQLQHQNGHLPPFKLA LFDPE SWDK
Sbjct: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDK 37

BLAST of ClCG03G001410 vs. ExPASy TrEMBL
Match: A0A6J1G9S8 (uncharacterized protein C20orf24 homolog OS=Cucurbita moschata OX=3662 GN=LOC111452238 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.0e-11
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0

Query: 68  MKDGKSIKLNSQLQHQNGHLPPFKLAKLFDPETSWDK 105
           MKDGKSIK+NSQLQHQNGHLPPFKLA LFDPE SWDK
Sbjct: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDK 37

BLAST of ClCG03G001410 vs. ExPASy TrEMBL
Match: A0A0A0LY22 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G523070 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.7e-10
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0

Query: 68  MKDGKSIKLNSQLQHQNGHLPPFKLAKLFDPETSWDK 105
           MKDGKS+K+NSQLQ QNGHLPPFKLAKLFDPETSWDK
Sbjct: 1   MKDGKSMKVNSQLQ-QNGHLPPFKLAKLFDPETSWDK 36

BLAST of ClCG03G001410 vs. TAIR 10
Match: AT5G59410.1 (Rab5-interacting family protein )

HSP 1 Score: 54.3 bits (129), Expect = 9.0e-08
Identity = 26/40 (65.00%), Postives = 28/40 (70.00%), Query Frame = 0

Query: 68  MKDGKSIKLN---SQLQHQNGHLPPFKLAKLFDPETSWDK 105
           MK+ KS KLN    Q  HQN HL P KLAKLFDP+ SWDK
Sbjct: 1   MKESKSAKLNQLQQQENHQNAHLSPSKLAKLFDPDASWDK 40

BLAST of ClCG03G001410 vs. TAIR 10
Match: AT2G29020.1 (Rab5-interacting family protein )

HSP 1 Score: 48.1 bits (113), Expect = 6.4e-06
Identity = 24/43 (55.81%), Postives = 27/43 (62.79%), Query Frame = 0

Query: 68  MKDGKSIKLNS------QLQHQNGHLPPFKLAKLFDPETSWDK 105
           MK+GKS K +S      Q+ HQN HL  F  AKLFD E SWDK
Sbjct: 1   MKEGKSSKSSSQQEQHEQIYHQNSHLGSFNFAKLFDSEASWDK 43

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038895585.11.6e-1194.59respirasome Complex Assembly Factor 1-like isoform X2 [Benincasa hispida][more]
XP_038895583.11.6e-1194.59respirasome Complex Assembly Factor 1-like isoform X1 [Benincasa hispida] >XP_03... [more]
KAA0067751.14.8e-1189.19Rab5-interacting [Cucumis melo var. makuwa] >TYJ97393.1 Rab5-interacting [Cucumi... [more]
XP_008457469.14.8e-1189.19PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo][more]
XP_022998338.16.2e-1191.89uncharacterized protein C20orf24 homolog [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VQ842.3e-1189.19Rab5-interacting OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002... [more]
A0A1S3C6922.3e-1189.19uncharacterized protein C20orf24 homolog OS=Cucumis melo OX=3656 GN=LOC103497150... [more]
A0A6J1KGG23.0e-1191.89uncharacterized protein C20orf24 homolog OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
A0A6J1G9S83.0e-1191.89uncharacterized protein C20orf24 homolog OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A0A0LY229.7e-1091.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G523070 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G59410.19.0e-0865.00Rab5-interacting family protein [more]
AT2G29020.16.4e-0655.81Rab5-interacting family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G001410.2ClCG03G001410.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006996 organelle organization
cellular_component GO:0016021 integral component of membrane