ClCG03G001060 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G001060
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRibulose bisphosphate carboxylase large chain
LocationCG_Chr03: 1065450 .. 1066920 (+)
RNA-Seq ExpressionClCG03G001060
SyntenyClCG03G001060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAACAATAGTTCCACAGTGGATTCATCTTATACAAGTAAATAACAACAACACTGATATGAGGGAACTTCTTGGATGAAGAAAAAAAAAAAGATCAAATTCCATGTAAATTTAAGCCTAGAGTGAAGTATCAGGGGGTTTGTTATTTTTATTTATCTATTTATTATTATTATTATTATTATTATTATTTGAGAAGAGCTATTTCTTTTCTTTGATAGCAAAATTGCAGTTTCTTATCCACTATTTGGTCCCTTTCTTTAGATCAGTCTTGAGTTGCTTACGACTGCACACTAAACTAGAACTAACTTCTCCCAAAGACTCTAAAATGTTCCTCGTACTACATGATGTATAAAAGATTTTCCACCACTTGTTCAAATAGGCCTCATCATTGACGTACTTCTACAAGTTGGCACCTTGATCTTTCTCTACGTAAAAATTGATTTTTTGGAACGTTTATCTTATTTTAATGCTTTTTTCATATGAATAAATAAGATTTTTTTTTTTTTTTAATTTTAAAATTTTTTCTTTTCATATATAGCAAAATGAACTAACGATAAATTGAACAAATATGGTCGCCCTCTATTGGGATGTACTATTAAACCAAAATTGGGATTATCCACTAAGAATTATGGTAGAGCAGTTTATGAATGTCTACGCGGTGGACTTGATTTTACCAAAGATGATGAAAACGTGAATTCCCAACCATTTATGCGTTGGAGAGACCGTTTCCTATTTTGTGTGGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAGGGACATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATGATGAAAAGGGCTGTATTTGCCCGAGAATTGGGAGTTCCTATCGTAATGCATGACTACTTAACAGGTGGATTCACTGCAAATACTAGCTTGGCTCATTATTGCCGAGATAATGGTCTATTATTTACAAATATAGCAAAATGAAAAAAATAGTCTATCACTGCCTAATAGACACTAATCGATTGATAGTGATTGATGATAGTAGTCTCTTACTCTCTATTAGTAATAGTAGTCTATACTTGTTTATCAGTTTGAAAAAGTTTTTTTTTATTTTTTATTTGAAAATATTTTAAACAATTTTGCAATCTAAAACAATTACCTCTAAAAATATTGAATAATTATTAATACTACTTTAATATTTTTTATATGATTATTTAATTTCAATTTATATTTACAAAATGGGCAAAACAAACACAAACACTTAACTCCTAGACATTAATTATCTTTACCAAAACGAACTTAGCTTCGCAGTAATTGACATGATTTTCCATCCAAGAGGTGAGAGGTTCAATCCCCATTCCCCCAATTGTTGTACTAAAAAAAGACATTATCTTGATATCCAAATACAGATATGATCCAACAAGATTCGTAAGCCCTTGACCCAACTATGATAGCTTTATTATAGTTTTTTTTAGTACATTATGTGA

mRNA sequence

ATGCGAACAATAGTTCCACAGTGGATTCATCTTATACAATATGGTCGCCCTCTATTGGGATGTACTATTAAACCAAAATTGGGATTATCCACTAAGAATTATGGTAGAGCAGTTTATGAATGTCTACGCGGTGGACTTGATTTTACCAAAGATGATGAAAACGTGAATTCCCAACCATTTATGCGTTGGAGAGACCGTTTCCTATTTTGTGTGGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAGGGACATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATGATGAAAAGGGCTGTATTTGCCCGAGAATTGGGAGTTCCTATCTACATTATGTGA

Coding sequence (CDS)

ATGCGAACAATAGTTCCACAGTGGATTCATCTTATACAATATGGTCGCCCTCTATTGGGATGTACTATTAAACCAAAATTGGGATTATCCACTAAGAATTATGGTAGAGCAGTTTATGAATGTCTACGCGGTGGACTTGATTTTACCAAAGATGATGAAAACGTGAATTCCCAACCATTTATGCGTTGGAGAGACCGTTTCCTATTTTGTGTGGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAGGGACATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATGATGAAAAGGGCTGTATTTGCCCGAGAATTGGGAGTTCCTATCTACATTATGTGA

Protein sequence

MRTIVPQWIHLIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPIYIM
Homology
[Close]
BLAST of ClCG03G001060 vs. NCBI nr
Match: AAP88014.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Ecballium elaterium])

HSP 1 Score: 214.5 bits (545), Expect = 4.7e-52
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 11  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 70
           L QYGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC
Sbjct: 162 LNQYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 221

Query: 71  VEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 114
            EAIYKSQAETGEIKGHYLNATAGTCEEMMKRA+FARELGVPI
Sbjct: 222 AEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPI 264

[Close]
BLAST of ClCG03G001060 vs. NCBI nr
Match: AHI48854.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Bruguiera cylindrica] >AHI48856.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Bruguiera parviflora] >AIH06986.1 ulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Bruguiera cylindrica] >AIH06988.1 ulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Bruguiera parviflora])

HSP 1 Score: 213.8 bits (543), Expect = 8.0e-52
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 11  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 70
           L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC
Sbjct: 153 LNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 212

Query: 71  VEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 114
           VEAIYK+QAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI
Sbjct: 213 VEAIYKAQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 255

[Close]
BLAST of ClCG03G001060 vs. NCBI nr
Match: XP_042528805.1 (ribulose bisphosphate carboxylase large chain-like [Dipodomys spectabilis])

HSP 1 Score: 213.8 bits (543), Expect = 8.0e-52
Identity = 97/105 (92.38%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 9   IHLIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFL 68
           + +I+YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTK+DENVNSQPFMRWRDRFL
Sbjct: 6   VRIIKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKNDENVNSQPFMRWRDRFL 65

Query: 69  FCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 114
           FC EAIYK+QAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI
Sbjct: 66  FCAEAIYKAQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 110

[Close]
BLAST of ClCG03G001060 vs. NCBI nr
Match: YP_009476306.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Fraxinus excelsior] >YP_009575772.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Fraxinus mandshurica] >QCQ20610.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Phaseolus vulgaris] >QFK68960.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Phoebe zhennan] >AVM38796.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Fraxinus excelsior] >QBJ06763.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Fraxinus mandshurica])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 11  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 70
           L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC
Sbjct: 169 LNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 228

Query: 71  VEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 114
            EAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI
Sbjct: 229 AEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 271

[Close]
BLAST of ClCG03G001060 vs. NCBI nr
Match: CAJ86723.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Athanasia trifurcata])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 11  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 70
           L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC
Sbjct: 142 LNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 201

Query: 71  VEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 114
            EAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI
Sbjct: 202 AEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 244

[Close]
BLAST of ClCG03G001060 vs. ExPASy Swiss-Prot
Match: Q09X09 (Ribulose bisphosphate carboxylase large chain OS=Morus indica OX=248361 GN=rbcL PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-54
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 11  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 70
           L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC
Sbjct: 162 LNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 221

Query: 71  VEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 114
            EAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI
Sbjct: 222 AEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 264

[Close]
BLAST of ClCG03G001060 vs. ExPASy Swiss-Prot
Match: Q32625 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Morus rubra OX=32202 GN=rbcL PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-54
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 11  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 70
           L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC
Sbjct: 152 LNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 211

Query: 71  VEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 114
            EAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI
Sbjct: 212 AEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 254

[Close]
BLAST of ClCG03G001060 vs. ExPASy Swiss-Prot
Match: P36485 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Salvia divinorum OX=28513 GN=rbcL PE=3 SV=2)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-54
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 11  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 70
           L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC
Sbjct: 153 LNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 212

Query: 71  VEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 114
            EAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI
Sbjct: 213 AEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 255

[Close]
BLAST of ClCG03G001060 vs. ExPASy Swiss-Prot
Match: P28455 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Sedum rubrotinctum OX=3785 GN=rbcL PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-54
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 11  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 70
           L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC
Sbjct: 152 LNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 211

Query: 71  VEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 114
            EAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI
Sbjct: 212 AEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 254

[Close]
BLAST of ClCG03G001060 vs. ExPASy Swiss-Prot
Match: P48686 (Ribulose bisphosphate carboxylase large chain OS=Brassica oleracea OX=3712 GN=rbcL PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.8e-54
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 11  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 70
           L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC
Sbjct: 162 LNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 221

Query: 71  VEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 114
            EAIYKSQAETGEIKGHYLNATAGTCEEMMKRA+FARELGVPI
Sbjct: 222 AEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPI 264

[Close]
BLAST of ClCG03G001060 vs. ExPASy TrEMBL
Match: Q7YKF7 (Ribulose bisphosphate carboxylase large chain OS=Ecballium elaterium OX=3679 GN=rbcL PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.3e-52
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 11  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 70
           L QYGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC
Sbjct: 162 LNQYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 221

Query: 71  VEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 114
            EAIYKSQAETGEIKGHYLNATAGTCEEMMKRA+FARELGVPI
Sbjct: 222 AEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPI 264

[Close]
BLAST of ClCG03G001060 vs. ExPASy TrEMBL
Match: A0A0B4L8W1 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Bruguiera parviflora OX=106618 GN=rbcl PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.9e-52
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 11  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 70
           L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC
Sbjct: 153 LNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 212

Query: 71  VEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 114
           VEAIYK+QAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI
Sbjct: 213 VEAIYKAQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 255

[Close]
BLAST of ClCG03G001060 vs. ExPASy TrEMBL
Match: A0A0B4L8F2 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Bruguiera cylindrica OX=106616 GN=rbcl PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.9e-52
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 11  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 70
           L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC
Sbjct: 153 LNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 212

Query: 71  VEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 114
           VEAIYK+QAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI
Sbjct: 213 VEAIYKAQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 255

[Close]
BLAST of ClCG03G001060 vs. ExPASy TrEMBL
Match: Q8SLM7 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cornus suecica OX=164435 GN=rbcL PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.1e-52
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 11  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 70
           L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC
Sbjct: 144 LNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 203

Query: 71  VEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 114
            EAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI
Sbjct: 204 AEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 246

[Close]
BLAST of ClCG03G001060 vs. ExPASy TrEMBL
Match: C4MXK3 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Chuquiraga morenonis OX=516720 GN=rbcL PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.1e-52
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 11  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 70
           L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC
Sbjct: 148 LNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 207

Query: 71  VEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 114
            EAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI
Sbjct: 208 AEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 250

[Close]
BLAST of ClCG03G001060 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 211.8 bits (538), Expect = 2.8e-55
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 11  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 70
           L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC
Sbjct: 162 LNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC 221

Query: 71  VEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI 114
            EAIYKSQAETGEIKGHYLNATAGTCEEM+KRAVFARELGVPI
Sbjct: 222 AEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPI 264

[Close]
BLAST of ClCG03G001060 vs. TAIR 10
Match: ATMG00280.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 167.5 bits (423), Expect = 6.1e-42
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 32  KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNA 91
           KNYGRAVYECLRGGL FTKDDENVNSQPFMRWRDRFLFC EA+YK+QAETG IKGHYLNA
Sbjct: 15  KNYGRAVYECLRGGLYFTKDDENVNSQPFMRWRDRFLFCAEAVYKAQAETGGIKGHYLNA 74

Query: 92  TAGTCEEMMKRAVFARELGVPI 114
           TAGTCEEM+KRAVFARELGVPI
Sbjct: 75  TAGTCEEMIKRAVFARELGVPI 96

[Close]
BLAST of ClCG03G001060 vs. TAIR 10
Match: AT2G07732.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 165.6 bits (418), Expect = 2.3e-41
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0 

Query: 32  KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNA 91
           KNYGRAVYECLRGGL FTKDDENVNSQPFMRWRDRFLFC EA+YK+QAETG IKGHYLNA
Sbjct: 15  KNYGRAVYECLRGGLYFTKDDENVNSQPFMRWRDRFLFCAEAVYKAQAETGGIKGHYLNA 74

Query: 92  TAGTCEEMMKRAVFARELGVPI 114
           T GTCEEM+KRAVFARELGVPI
Sbjct: 75  TPGTCEEMIKRAVFARELGVPI 96

The following BLAST results are available for this feature:
BLAST of ClCG03G001060 vs. NCBI nr
Match NameE-valueIdentityDescription
AAP88014.14.7e-5296.12ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Ecballium elateri... [more]
AHI48854.18.0e-5296.12ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Bruguier... [more]
XP_042528805.18.0e-5292.38ribulose bisphosphate carboxylase large chain-like [Dipodomys spectabilis][more]
YP_009476306.11.0e-5196.12ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Fraxinus excelsio... [more]
CAJ86723.11.0e-5196.12ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Athanasi... [more]
BLAST of ClCG03G001060 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q09X091.4e-5496.12Ribulose bisphosphate carboxylase large chain OS=Morus indica OX=248361 GN=rbcL ... [more]
Q326251.4e-5496.12Ribulose bisphosphate carboxylase large chain (Fragment) OS=Morus rubra OX=32202... [more]
P364851.4e-5496.12Ribulose bisphosphate carboxylase large chain (Fragment) OS=Salvia divinorum OX=... [more]
P284551.4e-5496.12Ribulose bisphosphate carboxylase large chain (Fragment) OS=Sedum rubrotinctum O... [more]
P486861.8e-5495.15Ribulose bisphosphate carboxylase large chain OS=Brassica oleracea OX=3712 GN=rb... [more]
BLAST of ClCG03G001060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Q7YKF72.3e-5296.12Ribulose bisphosphate carboxylase large chain OS=Ecballium elaterium OX=3679 GN=... [more]
A0A0B4L8W13.9e-5296.12Ribulose bisphosphate carboxylase large chain (Fragment) OS=Bruguiera parviflora... [more]
A0A0B4L8F23.9e-5296.12Ribulose bisphosphate carboxylase large chain (Fragment) OS=Bruguiera cylindrica... [more]
Q8SLM75.1e-5296.12Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cornus suecica OX=16... [more]
C4MXK35.1e-5296.12Ribulose bisphosphate carboxylase large chain (Fragment) OS=Chuquiraga morenonis... [more]
BLAST of ClCG03G001060 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00490.12.8e-5595.15ribulose-bisphosphate carboxylases [more]
ATMG00280.16.1e-4292.68Ribulose bisphosphate carboxylase large chain, catalytic domain [more]
AT2G07732.12.3e-4191.46Ribulose bisphosphate carboxylase large chain, catalytic domain [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyGENE3D3.20.20.110coord: 4..116
e-value: 8.9E-50
score: 171.7
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilySUPERFAMILY51649RuBisCo, C-terminal domaincoord: 13..114
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalPFAMPF00016RuBisCO_largecoord: 4..114
e-value: 2.8E-45
score: 154.8
NoneNo IPR availablePANTHERPTHR42704:SF6RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAINcoord: 11..114
IPR033966RuBisCOPANTHERPTHR42704RIBULOSE BISPHOSPHATE CARBOXYLASEcoord: 11..114
IPR020878Ribulose bisphosphate carboxylase, large chain, active sitePROSITEPS00157RUBISCO_LARGEcoord: 45..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G001060.2ClCG03G001060.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0015977 carbon fixation
cellular_component GO:0009507 chloroplast
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity