ClCG03G000990 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G000990
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	serine/arginine-rich splicing factor SR45a-like
Location	CG_Chr03: 1007879 .. 1011346 (+)
RNA-Seq Expression	ClCG03G000990
Synteny	ClCG03G000990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGCTTTCGTACGCAAATTCTCTTTCTAACGCGTCTTACATCTATTATGCGAGCCTGAGAGCGATCGATGCAGTGAATCTCCGTTCTGTAGGCCGCCGTGATTGAGTGAGAATTGAGAAGAACGCTCGGGTTACCTTTAGCTTTGATTTGAGTTTTGCATTCACTGGTTTGTACGGTAAGTTCTCTCTCTGTCTTTCAATTGATGGGTTTTTCATGTATTTTTGTTGTCTGAGATGAAATGTTCGGGTTCTGATCTTCATTTCCGGAAGAATTAGGTTTGGGTTATTTCTTCGATTGTTGTTTCTGTTATTAGCATGTGCATGTGACGCGAGTGGAGTATTTTCTGTAATTTTCTTGGAAATTTTAGGTGAAATTTGAAAGTTGCATGTCTTTTCGTGTCTGAGATGATATGTTCAGGGTTCTGATCGACATGCGCGATTGATTCTGCTCTATATGATGTTTATGGCAAGAATTATGTTCTGCTTATTAAGCCGATTGTTTTTACTCTATGATTACCATAATAACGGGATGCAAATGGAGGATTTCTTTATTATTTTCTTGGAAATGTTCTTGTTAAATTAGGATCTGACTGGAGAAGATGATATTAACGATATTTGTTTTTCATTGGAAGTCATGGATCTTATATTATTTTTAGGTTAAATTGCAAATTTGGTCCAGTTGGTGGAAAGTTAGAATTTAGTCTTTATAAATAGAATTTAGGTAAATTTAGCCCCTTTGATCGGTAGAAACCCTTTTATGAAATTTTATGCTTTGAAATTTTTATGAAGCATGAGGACGATTTATTTGGTTTTATCCGATCAAAAGGACCAAATTCTAACTTTTTTCGACACCAAATTTGCAATTTATCAAAAGCTTGATAAATACTCAATTGATAGTTGCTTGAGTTCTGTTCAAGACGATATTCATACCTAATAATACTGTTATCATTTTGGCTTTTGTTGAGTCTTGTGCTTTTCTGTTGTAAACTCCCGTTGAATTTAGTTTTTCTTGTCTGGTCTGGTTGCAGATGTCATACTCCCGAAGGTCTAGGTATTCCCGCTCCCCATCATACAAACGATCAGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCGAGGTAACTTCTTGCTGAGGAAGCATGTGCTTGTTTGGTTTTCCCACTTCTCTAAATCATACGTACATATGCCTTTATTCTTATTTTGCGGATTCTCAATTTGTTTTTCAGGAGCCCTTCAAGTGACGTTGAAAATCCTGGGAACAACTTGTATGTCACTGGTTTGTCACCTAGAATAACAAGAAGAGAACTTGAGAAGCATTTTTCTGCTGAGGGAACAGTACGTTCCTGTTCTCTTATTTTCTTTAAACTTCTTATTTTCTTGGCTTGTATTCTTAGTGGCCGTGTTTGTATTTTGTCTTCTGTGTTGGTGATTTAAATTATGCACTATTTTCAATTCATGTATGAATTTTTCTATATTTCAGGTGCTAGATGTTCATCTTGTGGCCGATCCATTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTATTGATGAGGCAGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGTAAAAGTTTCACCAAGTATTTTTTTCAAAGACTTGGGATGTTTCCCATTATTACTCATCTTGTTCTTTAACCTCAAATATTTACGGGATCTCTGGATGGTTTGTTGTTAGAGATTTGAGTATTTTTGCTTCTTTGCACTTGAAGTTTTTTTGGCAGCAGGTTAGCTGTATGTAGCAGCTCTTCATCAAACTCAAACTACAACTTAACAAACAAAACAAACACATGAAGTCTCAGAACACTGGGGTTGTATGCCCTGCATTTCTCTCTATTTCTGCCAATTGGATTATATGTTATTTAAGTATTTTAGCTTTTTTCTTTTTCCTTCTAATTTTGACTCTAGACACCATCACTTGCACCCCTGCTGGTACTTCTCTTAGATGGACGATTGTGAGTCGTCGTCTCATTTTTCTATCTTTAATTGTTTGATAGGCTCGAAGGCGGAGAGGTAGAACTCCAACTCCTGGGAGGTATCTTGGACTTAGAACAGTTCATGGTGAGGTTTTAATCTTATGTTTGGCTTATTGCTGTGAAGTATCTTGATATCTCTGTCTAATCTTCATCATTCTAACAGTGAGGCGTAGGTCGCGTAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCATATAGGAGAAGCTTTAGCCGCTCTACTCATTATTCATCTGACCGTAGCAGGAGTAGGTCCCATTCCCTTGACCGACGCCGTAGATCATACGGTTCCCCTTATCAGTATAGATCGTACTCTTATAGTCGACGTAGATATGATTCTCCAGACTACAGGCATTATAAGTCATATTCTCGATCCCGCTCACCGTATCATAGGTGTGGTCGTGATAAGTCATACTCACCTTATGACAGTTATTCCCCTTATCCTTACTATAGAAGGCACAGTTATCGGTCAGTTTCTCGGAGCCTGTCACCAGAGGCAAGGATTTCTCATAGACATTATTCCAGGAGTTATTCTCCTGGGCCTAGGAGAAGAACATTGAGGAGTTACTCTCGCAGCCCCTCCCTGGAATCGAGGAGAAGTTATTCACGTAGTATTTCCCCTAAACGAAGCAGGAGATCATGGAGCAGCTATTCATACAGCATTTCTCCTGAAAGAAGCAGGAGCTCAAGGAGTCGCTCTCCCAGCAATACCCCGAGACAGCATAGCTACAAGAGAGGGTATTCTGGTAGGAGTCGATCGAGAAGTGGAAGTGTGAGTTCAAGGTCCGTTAGCGCTGCTTGATTCACTGATCTACTTCCCTTGCTACATTCTCATGGTGATGAATGTTTGGAATTTTTAATGGGAACCAATCAGCTGCAGTTCAGTCAGTCTTTTGTGAATAACGATGTAAAAACCAAGCCCCTGGACGGGGGATGCCTTTGTGTTTGAGAATGGTGCTTGTGGAATAATTCATTCACTGTGAGGGGAAACGGCCGGGGATATTTGCTCTAAACTCATCTTGAAGCAGCTGTTAAGTTTCCAATTTAGTTGTGAAAAGTTCGGTTTAATTTGTAATTTTGATTCAAACTCACTCTTGGGTTGGACGTTGTGATTGTGACTATCTTATATGAACCTTAAAGATTCCGAACATCTGAGGTCTGGTCTAGCTCATTTGGAATTTCGTTTTTCTTTAAGTTGTCCTGACCTTTAACTTTAAGGGATTATTTGAAAGATTGAGCTTAGCTTGTAAACCATAATTCATCCAACATTCTGGGCAGTACCAATCTTCTGCCTGATTTGTTTTCCCTTAGTATTGCAAGTTCAAACTCAAAGTGATCGTCATATGGTTTGAAGAGATGTCTAGAATATTTATTTTATAAGTAACTTCATATAATTTTAATTTACC

mRNA sequence

TTTGGCTTTCGTACGCAAATTCTCTTTCTAACGCGTCTTACATCTATTATGCGAGCCTGAGAGCGATCGATGCAGTGAATCTCCGTTCTGTAGGCCGCCGTGATTGAGTGAGAATTGAGAAGAACGCTCGGGTTACCTTTAGCTTTGATTTGAGTTTTGCATTCACTGGTTTGTACGATGTCATACTCCCGAAGGTCTAGGTATTCCCGCTCCCCATCATACAAACGATCAGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCGAGGAGCCCTTCAAGTGACGTTGAAAATCCTGGGAACAACTTGTATGTCACTGGTTTGTCACCTAGAATAACAAGAAGAGAACTTGAGAAGCATTTTTCTGCTGAGGGAACAGTGCTAGATGTTCATCTTGTGGCCGATCCATTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTATTGATGAGGCAGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGCTCGAAGGCGGAGAGGTAGAACTCCAACTCCTGGGAGGTATCTTGGACTTAGAACAGTTCATGTGAGGCGTAGGTCGCGTAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCATATAGGAGAAGCTTTAGCCGCTCTACTCATTATTCATCTGACCGTAGCAGGAGTAGGTCCCATTCCCTTGACCGACGCCGTAGATCATACGGTTCCCCTTATCAGTATAGATCGTACTCTTATAGTCGACGTAGATATGATTCTCCAGACTACAGGCATTATAAGTCATATTCTCGATCCCGCTCACCGTATCATAGGTGTGGTCGTGATAAGTCATACTCACCTTATGACAGTTATTCCCCTTATCCTTACTATAGAAGGCACAGTTATCGGTCAGTTTCTCGGAGCCTGTCACCAGAGGCAAGGATTTCTCATAGACATTATTCCAGGAGTTATTCTCCTGGGCCTAGGAGAAGAACATTGAGGAGTTACTCTCGCAGCCCCTCCCTGGAATCGAGGAGAAGTTATTCACGTAGTATTTCCCCTAAACGAAGCAGGAGATCATGGAGCAGCTATTCATACAGCATTTCTCCTGAAAGAAGCAGGAGCTCAAGGAGTCGCTCTCCCAGCAATACCCCGAGACAGCATAGCTACAAGAGAGGGTATTCTGGTAGGAGTCGATCGAGAAGTGGAAGTGTGAGTTCAAGGTCCGTTAGCGCTGCTTGATTCACTGATCTACTTCCCTTGCTACATTCTCATGGTGATGAATGTTTGGAATTTTTAATGGGAACCAATCAGCTGCAGTTCAGTCAGTCTTTTGTGAATAACGATGTAAAAACCAAGCCCCTGGACGGGGGATGCCTTTGTGTTTGAGAATGGTGCTTGTGGAATAATTCATTCACTGTGAGGGGAAACGGCCGGGGATATTTGCTCTAAACTCATCTTGAAGCAGCTGTTAAGTTTCCAATTTAGTTGTGAAAAGTTCGGTTTAATTTGTAATTTTGATTCAAACTCACTCTTGGGTTGGACGTTGTGATTGTGACTATCTTATATGAACCTTAAAGATTCCGAACATCTGAGGTCTGGTCTAGCTCATTTGGAATTTCGTTTTTCTTTAAGTTGTCCTGACCTTTAACTTTAAGGGATTATTTGAAAGATTGAGCTTAGCTTGTAAACCATAATTCATCCAACATTCTGGGCAGTACCAATCTTCTGCCTGATTTGTTTTCCCTTAGTATTGCAAGTTCAAACTCAAAGTGATCGTCATATGGTTTGAAGAGATGTCTAGAATATTTATTTTATAAGTAACTTCATATAATTTTAATTTACC

Coding sequence (CDS)

ATGTCATACTCCCGAAGGTCTAGGTATTCCCGCTCCCCATCATACAAACGATCAGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCGAGGAGCCCTTCAAGTGACGTTGAAAATCCTGGGAACAACTTGTATGTCACTGGTTTGTCACCTAGAATAACAAGAAGAGAACTTGAGAAGCATTTTTCTGCTGAGGGAACAGTGCTAGATGTTCATCTTGTGGCCGATCCATTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTATTGATGAGGCAGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGCTCGAAGGCGGAGAGGTAGAACTCCAACTCCTGGGAGGTATCTTGGACTTAGAACAGTTCATGTGAGGCGTAGGTCGCGTAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCATATAGGAGAAGCTTTAGCCGCTCTACTCATTATTCATCTGACCGTAGCAGGAGTAGGTCCCATTCCCTTGACCGACGCCGTAGATCATACGGTTCCCCTTATCAGTATAGATCGTACTCTTATAGTCGACGTAGATATGATTCTCCAGACTACAGGCATTATAAGTCATATTCTCGATCCCGCTCACCGTATCATAGGTGTGGTCGTGATAAGTCATACTCACCTTATGACAGTTATTCCCCTTATCCTTACTATAGAAGGCACAGTTATCGGTCAGTTTCTCGGAGCCTGTCACCAGAGGCAAGGATTTCTCATAGACATTATTCCAGGAGTTATTCTCCTGGGCCTAGGAGAAGAACATTGAGGAGTTACTCTCGCAGCCCCTCCCTGGAATCGAGGAGAAGTTATTCACGTAGTATTTCCCCTAAACGAAGCAGGAGATCATGGAGCAGCTATTCATACAGCATTTCTCCTGAAAGAAGCAGGAGCTCAAGGAGTCGCTCTCCCAGCAATACCCCGAGACAGCATAGCTACAAGAGAGGGTATTCTGGTAGGAGTCGATCGAGAAGTGGAAGTGTGAGTTCAAGGTCCGTTAGCGCTGCTTGA

Protein sequence

MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLDRRRRSYGSPYQYRSYSYSRRRYDSPDYRHYKSYSRSRSPYHRCGRDKSYSPYDSYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLESRRSYSRSISPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRSGSVSSRSVSAA

Homology

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BLAST of ClCG03G000990 vs. NCBI nr
Match: XP_038894517.1 (serine/arginine-rich splicing factor SR45a isoform X1 [Benincasa hispida])

HSP 1 Score: 546.2 bits (1406), Expect = 2.1e-151
Identity = 319/359 (88.86%), Postives = 329/359 (91.64%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MS SRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSCSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DPLTRESRGFGFITMSS DEA+NCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPLTRESRGFGFITMSSNDEADNCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLD 180
           RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRS SRST YSS+RSRSRSHS+D
Sbjct: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTDYSSNRSRSRSHSVD 180

Query: 181 RRRRSYGSPYQYRSYSYSRRRYDSPDYRHYKSYSRSRSPYHRCGRDKSYSPYDSYSPYPY 240
           R RRSYGS Y YRSYSYSRRRYDSPD R +KSYSRSRSPY R  RD+SYSPYD YSP PY
Sbjct: 181 RHRRSYGSSYNYRSYSYSRRRYDSPDCRRHKSYSRSRSPYRRRHRDRSYSPYDDYSPDPY 240

Query: 241 YRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTL-RSYSRSPSLESRRSYSRSISPK 300
           YRRH YRSVSRSLSP+ARIS RHYSRSYSP PRRRTL RSYSRS S ESRRSYSRSISP+
Sbjct: 241 YRRHRYRSVSRSLSPKARISSRHYSRSYSPEPRRRTLRRSYSRSLSWESRRSYSRSISPE 300

Query: 301 RSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSYKRGYS-GRSRSRSGSVSSRSVSAA 358
           RSRRSWSSYSYS+SPERSRSSRSRS SNT R+HSYK   S  RSRSRS SV+SRSVS A
Sbjct: 301 RSRRSWSSYSYSVSPERSRSSRSRSRSNTSRRHSYKLYESRRRSRSRSRSVTSRSVSPA 359

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BLAST of ClCG03G000990 vs. NCBI nr
Match: XP_008457405.1 (PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo])

HSP 1 Score: 527.7 bits (1358), Expect = 7.7e-146
Identity = 313/370 (84.59%), Postives = 329/370 (88.92%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHL+ADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLD 180
           RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRS SRSTHYSSDRSRSRS S++
Sbjct: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSIN 180

Query: 181 RRRRSYGSPYQYRSYSYSRRRYDSP----------DYRHYKSYSRSRSPYHRCGRDKSYS 240
           R RRSYGSPY  RSYSYSRRRYDSP           YRH++SYSRS SPY R  RD+SYS
Sbjct: 181 RHRRSYGSPYHRRSYSYSRRRYDSPYYRRRYDSPDYYRHHRSYSRSSSPYRRWSRDRSYS 240

Query: 241 PYDSYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLESRR 300
           PYD YSP PYYRRH YRSVSRSLSP++R + RHYSRSYSP PRRRTLR+YS SPS ESRR
Sbjct: 241 PYDYYSPDPYYRRHRYRSVSRSLSPKSR-NGRHYSRSYSPEPRRRTLRNYSHSPSRESRR 300

Query: 301 SYSRSISPKRSRRSWSS-YSYSISPERSRSSRSRSPSNTPRQH--SYKRGYSGRSRSRSG 358
           SYSRSISP+RSRRS SS YS SISPER RS RSRS S+TPR+H  + KRGYS RSRSRS 
Sbjct: 301 SYSRSISPERSRRSGSSVYSSSISPERGRSLRSRSCSHTPRRHESTRKRGYSSRSRSRSQ 360

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BLAST of ClCG03G000990 vs. NCBI nr
Match: XP_004145262.1 (serine/arginine-rich splicing factor SR45a [Cucumis sativus] >KGN65784.1 hypothetical protein Csa_023227 [Cucumis sativus])

HSP 1 Score: 514.6 bits (1324), Expect = 6.8e-142
Identity = 308/369 (83.47%), Postives = 323/369 (87.53%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLD 180
           RRGRTPTPGRYLGLRTVH RRRSRSYSSRRSPSYSPYRRS SRSTH SSDRSRSRS S+D
Sbjct: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSID 180

Query: 181 RRRRSYGSPYQYRSYSYSRRRYDSPD----------YRHYKSYSRSRSPYHRCGRDKSYS 240
           + RR+YGSPY  RSYSYSRRRYDSPD          YRH+KSYSRSRSPY R  RD+SYS
Sbjct: 181 QHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS 240

Query: 241 PYDSYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLESRR 300
           P D YSP PYYRRH YRSVSRSLSP++R S RHYSRSYSP PRRRTLR++ RSPS E   
Sbjct: 241 PCDHYSPDPYYRRHRYRSVSRSLSPKSRNS-RHYSRSYSPEPRRRTLRNHYRSPSQE-LS 300

Query: 301 SYSRSISPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQH--SYKRGYSGRSRSRSGS 358
           SYSRSISP+RSR   S YS SISPER RSSRSRS S+TPR+H  + KRGYS RSRSRS S
Sbjct: 301 SYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSRSQS 360

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BLAST of ClCG03G000990 vs. NCBI nr
Match: KAG6607292.1 (Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 453.0 bits (1164), Expect = 2.4e-123
Identity = 284/361 (78.67%), Postives = 302/361 (83.66%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 33  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 92

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSS DEAE CIKYLNRSVLEGR+ITVEKARR
Sbjct: 93  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 152

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLD 180
           RRGRTPTPGRY GLRTV VRRRSRSYSSRRSPSYSPY RS S S++YSSDRSRSRSHS +
Sbjct: 153 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 212

Query: 181 RRRRSYGSPYQYRSYS-YSRRRYDSPDYRHYKSYSRSRSPYHRC---GRDKSYSPYDSYS 240
           RRRRS  SPY YRSYS YS RRYDSP YR ++SYSRS SP  R      D+SYSPYD  S
Sbjct: 213 RRRRSNDSPYHYRSYSPYSGRRYDSPYYRRHRSYSRSHSPCSRLPTRRHDRSYSPYDYCS 272

Query: 241 PYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLESRRSYSRSI 300
           P PYYRRH  RSVSRS+SP+AR+S R YSRSYSP  RR   RSYSRS      RSYSRS+
Sbjct: 273 PDPYYRRHRDRSVSRSVSPKARVSSRRYSRSYSPRHRRSASRSYSRS------RSYSRSL 332

Query: 301 SPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRSGSVSSRSVSA 358
           SP+RSRR + S+S+SISPER RSSRSRS S+TPR H  + GYSG     SGSV+SRSVS 
Sbjct: 333 SPERSRR-FRSHSHSISPER-RSSRSRSRSHTPRHHK-RGGYSG----GSGSVASRSVSP 380

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BLAST of ClCG03G000990 vs. NCBI nr
Match: XP_023525006.1 (serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 446.0 bits (1146), Expect = 3.0e-121
Identity = 283/361 (78.39%), Postives = 299/361 (82.83%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRREL K
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSS DEAE CIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLD 180
           RRGRTPTPGRY GLRTV VRRRSRSYSSRRSPSYSPY RS S S++YSSDRSRSRSHS D
Sbjct: 121 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPD 180

Query: 181 RRRRSYGSPYQYRSYS-YSRRRYDSPDYRHYKSYSRSRSPYHRC---GRDKSYSPYDSYS 240
           RRRRS  SPY+YRSYS YS RRYDSP YRH++SYSRS SP  R     RD+SYSPYD  S
Sbjct: 181 RRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSPYDYCS 240

Query: 241 PYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLESRRSYSRSI 300
           P PYYRRH   S+SRS+SP+AR+S R YSRSYSP   R   RSYSRS      RSYSRSI
Sbjct: 241 PDPYYRRHRDGSISRSVSPKARVSSRRYSRSYSPRHCRSASRSYSRS------RSYSRSI 300

Query: 301 SPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRSGSVSSRSVSA 358
           SP+RSRRS   +S+SI+PER RSSRSRS S+TP  H  + GYSG     SGSV SRSVS 
Sbjct: 301 SPERSRRS-GRHSHSIAPER-RSSRSRSCSSTPGCHK-RGGYSG----GSGSVVSRSVSP 348

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BLAST of ClCG03G000990 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 9.1e-57
Identity = 195/364 (53.57%), Postives = 219/364 (60.16%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 120
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S+ +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 121 ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSH 180
           ARRRRGRTPTPG+YLGLRT   R +S SYS RRS S S      SRS  YSSDR RS S 
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSCSR-----SRSRSYSSDRGRSYSP 210

Query: 181 SLDRRRRSYG-SPYQYRSYSYSRRRYDSPDYRHYKSYSRSRSPYH-RCGRDKSYS-PYDS 240
           S  RR RS   SP+  R   YS  R  SPD R+ +   RS SPY+ R  R +SYS    +
Sbjct: 211 SYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRDRSYSPYYRRRDRSRSYSRNCRA 270

Query: 241 YSPYPYYRRHSYRSVSRSLSPEARISHRHYS-------RSYSPGPRRRTLRSYS-RSPSL 300
               PYY R  YRS SRS SP  R   R  S       RSYSP  + R  RSYS  S   
Sbjct: 271 RDRSPYYMRR-YRSRSRSYSPRYRARDRSCSPYYRGRDRSYSPHYQGRD-RSYSPESRYY 330

Query: 301 ESRRSYSRSISPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRS 351
              RS S S+SP        S S SISP + R           RQ S     S RS S S
Sbjct: 331 RRHRSVSGSVSP-----GGRSMSRSISPRKGRKESRSKSRRHDRQSSMCHSRSARS-STS 381

[Close]

BLAST of ClCG03G000990 vs. ExPASy Swiss-Prot
Match: Q10422 (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-15
Identity = 69/221 (31.22%), Postives = 115/221 (52.04%), Query Frame = 0


Query: 20  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLT 79
           + S +  +   +S     EN GN+L+V+G++ R+   EL++ FS  GTV  V ++ +P+T
Sbjct: 79  NESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVT 138

Query: 80  RESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHV 139
           + SRGFGF++ S+++EA + I  LN     GR++ V+KA+R R  +PTPG+Y+G      
Sbjct: 139 KASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDR--- 198

Query: 140 RRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLDRRRRSYGSPYQYRSYSY-- 199
           RR SR + S            + R+ +   D +R R+     R +   SP  YR   Y  
Sbjct: 199 RRNSRDFPSNNKDG------GYRRNNYRDRDSNRYRNSYRPSRPQREHSPGNYRKERYNV 258

Query: 200 -SRRRYDSPDYRHYKSYSRSRSPYHRCGRDKSYSPYDSYSP 238
            SR R +    RH+   S + + +H     ++ +P +   P
Sbjct: 259 DSRPRRE----RHFHGRSFAHAEHHSVPNMRNDTPGNEALP 286

[Close]

BLAST of ClCG03G000990 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-11
Identity = 80/205 (39.02%), Postives = 102/205 (49.76%), Query Frame = 0


Query: 33  PSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS 92
           P  DVE    +L V  L+ R +   L + F   G V DV++  D  T+ESRGF F+    
Sbjct: 6   PPPDVEGM-TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 65

Query: 93  IDEAENCIKYLNRSVLEGRIITVEKARRRR-------GRTPTPGRY----LGLRTVHVRR 152
             +AE+ +  ++ +VL+GR + V+ AR  R        R P P RY     G R+   RR
Sbjct: 66  KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRR 125

Query: 153 ----RSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLDRRRRSYGSPYQYRSYSY 212
               RSRS S  RS S S Y RS SRS   S  RS S+S S  R +    S  + RS S 
Sbjct: 126 RRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSR 185

Query: 213 SRRRYDSP---DYRHYKSYSRSRSP 220
           SR R  SP     R  KS SRS+SP
Sbjct: 186 SRSRSRSPPPVSKRESKSRSRSKSP 209

[Close]

BLAST of ClCG03G000990 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-11
Identity = 80/205 (39.02%), Postives = 102/205 (49.76%), Query Frame = 0


Query: 33  PSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS 92
           P  DVE    +L V  L+ R +   L + F   G V DV++  D  T+ESRGF F+    
Sbjct: 6   PPPDVEGM-TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 65

Query: 93  IDEAENCIKYLNRSVLEGRIITVEKARRRR-------GRTPTPGRY----LGLRTVHVRR 152
             +AE+ +  ++ +VL+GR + V+ AR  R        R P P RY     G R+   RR
Sbjct: 66  KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRR 125

Query: 153 ----RSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLDRRRRSYGSPYQYRSYSY 212
               RSRS S  RS S S Y RS SRS   S  RS S+S S  R +    S  + RS S 
Sbjct: 126 RRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSR 185

Query: 213 SRRRYDSP---DYRHYKSYSRSRSP 220
           SR R  SP     R  KS SRS+SP
Sbjct: 186 SRSRSRSPPPVSKRESKSRSRSKSP 209

[Close]

BLAST of ClCG03G000990 vs. ExPASy Swiss-Prot
Match: Q62093 (Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV=4)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-11
Identity = 80/205 (39.02%), Postives = 102/205 (49.76%), Query Frame = 0


Query: 33  PSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS 92
           P  DVE    +L V  L+ R +   L + F   G V DV++  D  T+ESRGF F+    
Sbjct: 6   PPPDVEGM-TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 65

Query: 93  IDEAENCIKYLNRSVLEGRIITVEKARRRR-------GRTPTPGRY----LGLRTVHVRR 152
             +AE+ +  ++ +VL+GR + V+ AR  R        R P P RY     G R+   RR
Sbjct: 66  KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRR 125

Query: 153 ----RSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLDRRRRSYGSPYQYRSYSY 212
               RSRS S  RS S S Y RS SRS   S  RS S+S S  R +    S  + RS S 
Sbjct: 126 RRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSR 185

Query: 213 SRRRYDSP---DYRHYKSYSRSRSP 220
           SR R  SP     R  KS SRS+SP
Sbjct: 186 SRSRSRSPPPVSKRESKSRSRSKSP 209

[Close]

BLAST of ClCG03G000990 vs. ExPASy TrEMBL
Match: A0A1S3C508 (serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC103497100 PE=4 SV=1)

HSP 1 Score: 527.7 bits (1358), Expect = 3.7e-146
Identity = 313/370 (84.59%), Postives = 329/370 (88.92%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHL+ADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLD 180
           RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRS SRSTHYSSDRSRSRS S++
Sbjct: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSIN 180

Query: 181 RRRRSYGSPYQYRSYSYSRRRYDSP----------DYRHYKSYSRSRSPYHRCGRDKSYS 240
           R RRSYGSPY  RSYSYSRRRYDSP           YRH++SYSRS SPY R  RD+SYS
Sbjct: 181 RHRRSYGSPYHRRSYSYSRRRYDSPYYRRRYDSPDYYRHHRSYSRSSSPYRRWSRDRSYS 240

Query: 241 PYDSYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLESRR 300
           PYD YSP PYYRRH YRSVSRSLSP++R + RHYSRSYSP PRRRTLR+YS SPS ESRR
Sbjct: 241 PYDYYSPDPYYRRHRYRSVSRSLSPKSR-NGRHYSRSYSPEPRRRTLRNYSHSPSRESRR 300

Query: 301 SYSRSISPKRSRRSWSS-YSYSISPERSRSSRSRSPSNTPRQH--SYKRGYSGRSRSRSG 358
           SYSRSISP+RSRRS SS YS SISPER RS RSRS S+TPR+H  + KRGYS RSRSRS 
Sbjct: 301 SYSRSISPERSRRSGSSVYSSSISPERGRSLRSRSCSHTPRRHESTRKRGYSSRSRSRSQ 360

[Close]

BLAST of ClCG03G000990 vs. ExPASy TrEMBL
Match: A0A0A0LXJ6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G528490 PE=4 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 3.3e-142
Identity = 308/369 (83.47%), Postives = 323/369 (87.53%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLD 180
           RRGRTPTPGRYLGLRTVH RRRSRSYSSRRSPSYSPYRRS SRSTH SSDRSRSRS S+D
Sbjct: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSID 180

Query: 181 RRRRSYGSPYQYRSYSYSRRRYDSPD----------YRHYKSYSRSRSPYHRCGRDKSYS 240
           + RR+YGSPY  RSYSYSRRRYDSPD          YRH+KSYSRSRSPY R  RD+SYS
Sbjct: 181 QHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS 240

Query: 241 PYDSYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLESRR 300
           P D YSP PYYRRH YRSVSRSLSP++R S RHYSRSYSP PRRRTLR++ RSPS E   
Sbjct: 241 PCDHYSPDPYYRRHRYRSVSRSLSPKSRNS-RHYSRSYSPEPRRRTLRNHYRSPSQE-LS 300

Query: 301 SYSRSISPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQH--SYKRGYSGRSRSRSGS 358
           SYSRSISP+RSR   S YS SISPER RSSRSRS S+TPR+H  + KRGYS RSRSRS S
Sbjct: 301 SYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSRSQS 360

[Close]

BLAST of ClCG03G000990 vs. ExPASy TrEMBL
Match: A0A6J1GBJ2 (serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.9e-121
Identity = 282/361 (78.12%), Postives = 302/361 (83.66%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSS DEAE CIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLD 180
           RRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S S++YSSDRSRSRSHS +
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 181 RRRRSYGSPYQYRSYS-YSRRRYDSPDYRHYKSYSRSRSPYHRC---GRDKSYSPYDSYS 240
           RRRRS  SPY+YRSYS YSRRRYDSP YR ++SYSRS SP  R     RD+SYSPYD  S
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSPYDYCS 240

Query: 241 PYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLESRRSYSRSI 300
           P  YYRRH  RSVSRS+SP+AR+S R YS SYSP  RR   RS+SRS      RSYSRS+
Sbjct: 241 PDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRRSASRSHSRS------RSYSRSL 300

Query: 301 SPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRSGSVSSRSVSA 358
           SP+RSRR + S+S+SISPER RSSRSRS S+TPR H  + GYSG     SGSV+SRSVS 
Sbjct: 301 SPERSRR-FRSHSHSISPER-RSSRSRSRSHTPRHHK-RGGYSG----GSGSVASRSVSP 348

[Close]

BLAST of ClCG03G000990 vs. ExPASy TrEMBL
Match: A0A6J1GAS3 (serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 7.1e-121
Identity = 281/361 (77.84%), Postives = 301/361 (83.38%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSS DEAE CIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLD 180
           RRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S S++YSSDRSRSRSHS +
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 181 RRRRSYGSPYQYRSYS-YSRRRYDSPDYRHYKSYSRSRSPYHRC---GRDKSYSPYDSYS 240
           RRRRS  SPY+YRSYS YSRRRYDSP YR ++SYSRS SP  R      D+SYSPYD  S
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRLPTRRHDRSYSPYDYCS 240

Query: 241 PYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLESRRSYSRSI 300
           P  YYRRH  RSVSRS+SP+AR+S R YS SYSP  RR   RS+SRS      RSYSRS+
Sbjct: 241 PDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRRSASRSHSRS------RSYSRSL 300

Query: 301 SPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRSGSVSSRSVSA 358
           SP+RSRR + S+S+SISPER RSSRSRS S+TPR H  + GYSG     SGSV+SRSVS 
Sbjct: 301 SPERSRR-FRSHSHSISPER-RSSRSRSRSHTPRHHK-RGGYSG----GSGSVASRSVSP 348

[Close]

BLAST of ClCG03G000990 vs. ExPASy TrEMBL
Match: A0A6J1GBG9 (serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 2.3e-119
Identity = 283/380 (74.47%), Postives = 303/380 (79.74%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSS DEAE CIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLD 180
           RRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S S++YSSDRSRSRSHS +
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 181 RRRRSYGSPYQYRSYS-YSRRRYDSPDYRHYKSYSRSRSPYHR----------------C 240
           RRRRS  SPY+YRSYS YSRRRYDSP YR ++SYSRS SP  R                C
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPC 240

Query: 241 G------RDKSYSPYDSYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTL 300
                  RD+SYSPYD  SP  YYRRH  RSVSRS+SP+AR+S R YS SYSP  RR   
Sbjct: 241 SRSPTRRRDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRRSAS 300

Query: 301 RSYSRSPSLESRRSYSRSISPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSYKRG 358
           RS+SRS      RSYSRS+SP+RSRR + S+S+SISPER RSSRSRS S+TPR H  + G
Sbjct: 301 RSHSRS------RSYSRSLSPERSRR-FRSHSHSISPER-RSSRSRSRSHTPRHHK-RGG 360

[Close]

BLAST of ClCG03G000990 vs. TAIR 10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 222.2 bits (565), Expect = 6.5e-58
Identity = 195/364 (53.57%), Postives = 219/364 (60.16%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 120
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S+ +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 121 ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSH 180
           ARRRRGRTPTPG+YLGLRT   R +S SYS RRS S S      SRS  YSSDR RS S 
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSCSR-----SRSRSYSSDRGRSYSP 210

Query: 181 SLDRRRRSYG-SPYQYRSYSYSRRRYDSPDYRHYKSYSRSRSPYH-RCGRDKSYS-PYDS 240
           S  RR RS   SP+  R   YS  R  SPD R+ +   RS SPY+ R  R +SYS    +
Sbjct: 211 SYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRDRSYSPYYRRRDRSRSYSRNCRA 270

Query: 241 YSPYPYYRRHSYRSVSRSLSPEARISHRHYS-------RSYSPGPRRRTLRSYS-RSPSL 300
               PYY R  YRS SRS SP  R   R  S       RSYSP  + R  RSYS  S   
Sbjct: 271 RDRSPYYMRR-YRSRSRSYSPRYRARDRSCSPYYRGRDRSYSPHYQGRD-RSYSPESRYY 330

Query: 301 ESRRSYSRSISPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRS 351
              RS S S+SP        S S SISP + R           RQ S     S RS S S
Sbjct: 331 RRHRSVSGSVSP-----GGRSMSRSISPRKGRKESRSKSRRHDRQSSMCHSRSARS-STS 381

[Close]

BLAST of ClCG03G000990 vs. TAIR 10
Match: AT4G35785.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 146.7 bits (369), Expect = 3.5e-35
Identity = 108/214 (50.47%), Postives = 127/214 (59.35%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKH 61
           S SR    SRS S  R VS S SR RSRSRS  S+VENPG  LYVTGLS R+T ++LE H
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAH 90

Query: 62  FSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARRR 121
           F+ EG V    LV +P TR SRGF F+TMSS+ +AE CIKYLN+SVLEGR ITVE++RR+
Sbjct: 91  FAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERSRRK 150

Query: 122 RGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLDR 181
           R RTPTPG YLGL++     R    S  R      YR   S    YS      R     R
Sbjct: 151 RPRTPTPGHYLGLKSSRDSDREGRSSRGRHYDRDDYRDRRSPRRDYS-----PRDERRSR 210

Query: 182 RRRSYGSPYQYRSYSYSRRRYDSPDYRHYKSYSR 216
           R RSY SP+       S RR +  + R+    SR
Sbjct: 211 RDRSY-SPHGRSPERRSERRSERSERRYEPRGSR 238

[Close]

BLAST of ClCG03G000990 vs. TAIR 10
Match: AT1G07350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 143.7 bits (361), Expect = 2.9e-34
Identity = 81/120 (67.50%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 1   MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 60

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S+ +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 61  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 120

[Close]

BLAST of ClCG03G000990 vs. TAIR 10
Match: AT4G35785.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 142.1 bits (357), Expect = 8.5e-34
Identity = 108/215 (50.23%), Postives = 127/215 (59.07%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRITRRELEK 61
           S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE 
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 62  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 121
           HF+ EG V    LV +P TR SRGF F+TMSS+ +AE CIKYLN+SVLEGR ITVE++RR
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERSRR 150

Query: 122 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLD 181
           +R RTPTPG YLGL++     R    S  R      YR   S    YS      R     
Sbjct: 151 KRPRTPTPGHYLGLKSSRDSDREGRSSRGRHYDRDDYRDRRSPRRDYS-----PRDERRS 210

Query: 182 RRRRSYGSPYQYRSYSYSRRRYDSPDYRHYKSYSR 216
           RR RSY SP+       S RR +  + R+    SR
Sbjct: 211 RRDRSY-SPHGRSPERRSERRSERSERRYEPRGSR 239

[Close]

BLAST of ClCG03G000990 vs. TAIR 10
Match: AT4G35785.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-28
Identity = 73/117 (62.39%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRITRRELEK 61
           S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE 
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 62  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           HF+ EG V    LV +P TR SRGF F+TMSS+ +AE CIKYLN+SVLEGR ITVE+
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 147

The following BLAST results are available for this feature:

BLAST of ClCG03G000990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894517.1	2.1e-151	88.86	serine/arginine-rich splicing factor SR45a isoform X1 [Benincasa hispida]	[more]
XP_008457405.1	7.7e-146	84.59	PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo]	[more]
XP_004145262.1	6.8e-142	83.47	serine/arginine-rich splicing factor SR45a [Cucumis sativus] >KGN65784.1 hypothe...	[more]
KAG6607292.1	2.4e-123	78.67	Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subs...	[more]
XP_023525006.1	3.0e-121	78.39	serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita pepo subsp...	[more]

BLAST of ClCG03G000990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	9.1e-57	53.57	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q10422	3.0e-15	31.22	Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (stra...	[more]
Q3MHR5	2.0e-11	39.02	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	2.0e-11	39.02	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]
Q62093	2.0e-11	39.02	Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV...	[more]

BLAST of ClCG03G000990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C508	3.7e-146	84.59	serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LXJ6	3.3e-142	83.47	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G528490 PE=4 SV...	[more]
A0A6J1GBJ2	1.9e-121	78.12	serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata...	[more]
A0A6J1GAS3	7.1e-121	77.84	serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita moschata...	[more]
A0A6J1GBG9	2.3e-119	74.47	serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita moschata...	[more]

BLAST of ClCG03G000990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07350.1	6.5e-58	53.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.1	3.5e-35	50.47	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G07350.2	2.9e-34	67.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.2	8.5e-34	50.23	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.3	1.8e-28	62.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 43..116 e-value: 8.7E-23 score: 91.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 44..113 e-value: 7.9E-15 score: 54.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 42..120 score: 16.960629
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..126 e-value: 5.8E-27 score: 96.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..237
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..357
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 272..357
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 9..254
None	No IPR available	PANTHER	PTHR15241:SF351	SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1	coord: 9..254
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 30..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G000990.1	ClCG03G000990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding