ClCG03G000770 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G000770
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	nudC domain-containing protein 2
Location	CG_Chr03: 789378 .. 792114 (-)
RNA-Seq Expression	ClCG03G000770
Synteny	ClCG03G000770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGAAGAGCTTCTGTGAAATTCGCGGGAAAGGGAAGAAGCAAACCCTAAAGGTGGGATGGCAGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTTCACAACGGTTTTCTCTTCATCCTCTGCAATTTGATCTTCTCACTTTTCAATTTCAATCAATGAATTCATCGTTGTACGAGTTTTTTGATCTCTGTGCTCGCTTGCACGTGGTTTTTCAGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCCAAGCAATTCTACTGCAAGATTCAGTCTAGGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATGTCGGTATCTTTCGCATTTTTATACATTTTATTTTGGAATTTTGATCTATTGCTTTGTTTATGATTGTACCAATTGCTTTCAATCATTCATTTTCAGCACGAGCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACACTAGGTGATTGTAAATTCTCTCTTCAATGACTAAAATGGAATTTTGGGTGTAATGTTTTTACACCAAATAAACTTCATGGGACTGAATTCAGCTGGATGCTTCAGAAAAACATAATTATTAAATCAGCCAGATTGTTGGTGTCTCTTTTGTGATGTACCTATTTTGTTTATTTTGTATGGCAGAGGATGACATAATGCATATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAACTTGATCCTTACTCCTCTGATCTTGAGCAGAAGCGTCTTATGCTCCAGAGGTTTCAAGAGGAGGTCAGCTTTTTTTATACTCTATATGTTTGATGTATTTTAGATGATATGCTCATGTTTTTGTGCTTTCCATTTTTCTGTTGATTTATGTACTCTTTGTTTCTTTTCTTGAGCATTTTTATCATTCTTATTCAGAGATCAATAGTTTCAAGTTATCCAAATCGACTTTCATCCTATCAGGCTAGGATCATGGGGGATTCATTATTTGAGTTCTATTGAGTAAATAGTTATTGAGATGTTATGATAACTGCTTGATGTTGTATCTGGAATGAGACTAATGTGCCTTGTCATAAATATGAGACAGTGAGAAAGCTAATGTGTCTGGAAAATCACGACATTAATCCACTCTGTTACAGTTCCCCATGAGAAAAACATGGAAGGATTCCTATAAAATGTTAACAAGTTGATGTCTTTACAATCTAAACTTTTGGTGGACTGTTCGGTAGCTGCAGTGACAACTGTTTGAAAGCACCACCCCCCGTGTATGAGATGCCCCATCCTCCTCCTCTCGTTTCTTCTCTAGACTCAAACATGAGATCTACAACTTTATCTTAACCAATGTTTAGGTAGATGAAACATATCTTCCAAATTTTGCAATCGATAAGAGAGGGCTTTGGCCAAACACCATGGGGGGACTTGTAGGGAATTGGTTCAATCCATGGTGGTCACCTACCTAAGATTCAATATTTTATGAGTCATCTTGGCAACCAAACACTCATGGATTCATTATAAAAAAAAGAAAGAAGAAAAAAGAAAACCATAGAGCGGTCCTGGTCTATTTCTTCTCATTGGAGGCATTTCTTAAAAAGTTAATTAGGTGCACTGCACCCAACAAGTGGTAGAAAAAACCCCAACTCAATAGGCTAACTCTTTGTTCAAGTGATGTCCCCACAGTACCACCTCTCCTTTAGAAAAAAATCTTCCTTCAGGACACTCCCATGATAACTTGAACTTGTGATGAGCTCTTGTACCAACTAACGTAGGATGGTTGAGCCAATGTTTCAAAAGTGGCAGTTGATACGAGAGAGCTCTGTTATTCATATTTCATATAATGTCACGAAAGGTAGTTCATTAGTTTTGGATGAGGGTGTTGTAGGATTCTTGTTAGTTATTGAATTTTGATTGGGTGCTGTTATGCCTTTGTTTTTTATATCCCCAAGTGGCAGTGTTGTTATGCCTTTGTTTGTCTTGCTATTTAAAAGTAATGACATTTTAGAAATATACAATCATGTTCCTTTTCCTACCAAATTTCAGAAGTCCTGAGTCAAGTTTCAGTTATGTAATAAAATCTTGAAATTTAATCTGCACAAATTATTTCTTTGCAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGACCTTCATGGGGGGAATTCACTTAGGTTGACGAATATGGTGTGGCATTTATAACTTGCATGGTTGTGACATTCAGTAAATAATGTAGATTTTCTACTGGTCTTGATTTATTCAAATCCCTGTAATGACCGCGATTTGTGAGAAGAATATGTACCGAGTCTATGTGCAATCGCTGTAATGAAGTGAAAATATATAGGTGATATAAATTTAACTACCAACATTTTGTATTTTAACCTTCTATTTGGTTTGATATAAACAAGAGTTCCACATTTGATAGCAGGTGTCAGGTCATCATTCTCTATATATTTGTCTACCCAAATCTCATTCCCAGTAAAATAGAGAATGGACCTCTTTAAGTTTAAGTTCTCCTTGGCCAACCAAATTAATGTTCCCAAATATGATGTGATCCTGTTTAGGTTTCTAGTTCATGTGTAACAGCTCATGCTGAATGCCCAAAGTGGGTGGATGAAAACATTTGGCTGATGGGGCCTATCTTGTTGGCGTTGGCTGCCATTTCCTGA

mRNA sequence

AAAAAAGAAGAGCTTCTGTGAAATTCGCGGGAAAGGGAAGAAGCAAACCCTAAAGGTGGGATGGCAGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTTCACAACGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCCAAGCAATTCTACTGCAAGATTCAGTCTAGGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATCACGAGCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACACTAGAGGATGACATAATGCATATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAACTTGATCCTTACTCCTCTGATCTTGAGCAGAAGCGTCTTATGCTCCAGAGGTTTCAAGAGGAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGACCTTCATGGGGGGAATTCACTTAGCTCATGCTGAATGCCCAAAGTGGGTGGATGAAAACATTTGGCTGATGGGGCCTATCTTGTTGGCGTTGGCTGCCATTTCCTGA

Coding sequence (CDS)

ATGGCAGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTTCACAACGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCCAAGCAATTCTACTGCAAGATTCAGTCTAGGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATCACGAGCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACACTAGAGGATGACATAATGCATATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAACTTGATCCTTACTCCTCTGATCTTGAGCAGAAGCGTCTTATGCTCCAGAGGTTTCAAGAGGAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGACCTTCATGGGGGGAATTCACTTAGCTCATGCTGAATGCCCAAAGTGGGTGGATGAAAACATTTGGCTGATGGGGCCTATCTTGTTGGCGTTGGCTGCCATTTCCTGA

Protein sequence

MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKGNPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQKRLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIHLAHAECPKWVDENIWLMGPILLALAAIS

Homology

[Close]

BLAST of ClCG03G000770 vs. NCBI nr
Match: XP_038894388.1 (nudC domain-containing protein 2 [Benincasa hispida])

HSP 1 Score: 332.4 bits (851), Expect = 2.5e-87
Identity = 153/157 (97.45%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLE+VNIYINLPPNVHSKQFYCKIQSRHVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEDVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPP+LNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYS+DLEQK
Sbjct: 61  NPPFLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIHL 158
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI L
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIRL 157

[Close]

BLAST of ClCG03G000770 vs. NCBI nr
Match: XP_008457374.1 (PREDICTED: nudC domain-containing protein 2 [Cucumis melo] >KAA0031818.1 nudC domain-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 332.0 bits (850), Expect = 3.2e-87
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQSRHVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 156
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 155

[Close]

BLAST of ClCG03G000770 vs. NCBI nr
Match: KAG6607306.1 (NudC domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86
Identity = 151/156 (96.79%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVN+YINLPPNVHSKQFYCKIQSRHVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNMYINLPPNVHSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNHELTCPVKTDSSFWTLED IMHITLQKRDKGQTWASPIQGQGQLDPYS+DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDGIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIH 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIH
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIH 156

[Close]

BLAST of ClCG03G000770 vs. NCBI nr
Match: XP_004151457.1 (nudC domain-containing protein 2 [Cucumis sativus] >KGN65805.1 hypothetical protein Csa_023350 [Cucumis sativus])

HSP 1 Score: 329.3 bits (843), Expect = 2.1e-86
Identity = 152/155 (98.06%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNV+SKQFYCKIQSRHVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 156
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 155

[Close]

BLAST of ClCG03G000770 vs. NCBI nr
Match: XP_023523271.1 (nudC domain-containing protein 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 329.3 bits (843), Expect = 2.1e-86
Identity = 151/156 (96.79%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYL+HELTCPVKTDSSFWTLED IMHITLQKRDKGQTWASPIQGQGQLDPYS+DLEQK
Sbjct: 61  NPPYLDHELTCPVKTDSSFWTLEDGIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIH 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIH
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIH 156

[Close]

BLAST of ClCG03G000770 vs. ExPASy Swiss-Prot
Match: Q8WVJ2 (NudC domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NUDCD2 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.1e-21
Identity = 56/140 (40.00%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 8   EKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKGNPPYLNH 67
           E+R   +  G    +W QTLEEV I + +PP   ++   C +QSRHV + + G    L  
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSV-GGREILKG 65

Query: 68  ELTCPVKTDSSFWTLEDDIM---HITLQKRDKGQTWASPIQGQGQLDPYSSDLEQKRLML 127
           +L      D   WTLED  M    +T  KRD    W S ++ +   DP+  D  Q++L L
Sbjct: 66  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 125

Query: 128 QRFQEENPGFDFSQAQFSGN 145
           +RFQ+ENPGFDFS A+ SGN
Sbjct: 126 ERFQKENPGFDFSGAEISGN 144

[Close]

BLAST of ClCG03G000770 vs. ExPASy Swiss-Prot
Match: Q9CQ48 (NudC domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nudcd2 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.1e-21
Identity = 56/140 (40.00%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 8   EKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKGNPPYLNH 67
           E+R   +  G    +W QTLEEV I + +PP   ++   C +QSRHV + + G    L  
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAV-GGREILKG 65

Query: 68  ELTCPVKTDSSFWTLEDDIM---HITLQKRDKGQTWASPIQGQGQLDPYSSDLEQKRLML 127
           +L      D   WTLED  M    +T  KRD    W S ++ +   DP+  D  Q++L L
Sbjct: 66  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 125

Query: 128 QRFQEENPGFDFSQAQFSGN 145
           +RFQ+ENPGFDFS A+ SGN
Sbjct: 126 ERFQKENPGFDFSGAEISGN 144

[Close]

BLAST of ClCG03G000770 vs. ExPASy Swiss-Prot
Match: Q5M823 (NudC domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Nudcd2 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.2e-21
Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = 0


Query: 22  EWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKGNPPYLNHELTCPVKTDSSFWT 81
           +W QTLEEV I + +PP   ++   C +QSRHV + + G    L  +L      D   WT
Sbjct: 20  QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAV-GGREILKGKLFDSTIADEGTWT 79

Query: 82  LEDDIM---HITLQKRDKGQTWASPIQGQGQLDPYSSDLEQKRLMLQRFQEENPGFDFSQ 141
           LED  M    +T  KRD    W S ++ +   DP+  D  Q++L L+RFQ+ENPGFDFS 
Sbjct: 80  LEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSG 139

Query: 142 AQFSGN 145
           A+ SGN
Sbjct: 140 AEISGN 144

[Close]

BLAST of ClCG03G000770 vs. ExPASy Swiss-Prot
Match: Q9STN7 (Protein BOBBER 2 OS=Arabidopsis thaliana OX=3702 GN=BOB2 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13
Identity = 46/158 (29.11%), Postives = 75/158 (47.47%), Query Frame = 0


Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKGNPPYLNHELTCPVKTDSSFW 80
           + W Q L+EV I I +P    S+   C+I+   ++VG+KG    ++ E    VK D  FW
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195

Query: 81  TLEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPYS---------- 140
            +ED  ++ + L K+D+ + W   ++G+               G LDP +          
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMMFD 255

Query: 141 ----------SDLEQKRLMLQRFQEENPGFDFSQAQFS 143
                     SD  +K+ ML++F  +NPG DFS A+F+
Sbjct: 256 QRQKQMGLPRSDEIEKKDMLKKFMAQNPGMDFSNAKFN 293

[Close]

BLAST of ClCG03G000770 vs. ExPASy Swiss-Prot
Match: Q9LV09 (Protein BOBBER 1 OS=Arabidopsis thaliana OX=3702 GN=BOB1 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 44/158 (27.85%), Postives = 75/158 (47.47%), Query Frame = 0


Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKGNPPYLNHELTCPVKTDSSFW 80
           + W Q L+EV + I +P    ++   C+I+   ++VG+KG  P ++ EL   VK D  +W
Sbjct: 147 YSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDDCYW 206

Query: 81  TLEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPY----------- 140
            +ED  ++ I L K D+ + W   ++G+               G LDP            
Sbjct: 207 NIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKLGDLDPETRSTVEKMMFD 266

Query: 141 ---------SSDLEQKRLMLQRFQEENPGFDFSQAQFS 143
                    +S+  QK+ +L++F  E+P  DFS A+F+
Sbjct: 267 QRQKQMGLPTSEELQKQEILKKFMSEHPEMDFSNAKFN 304

[Close]

BLAST of ClCG03G000770 vs. ExPASy TrEMBL
Match: A0A5A7SMF6 (NudC domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00610 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.6e-87
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQSRHVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 156
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 155

[Close]

BLAST of ClCG03G000770 vs. ExPASy TrEMBL
Match: A0A1S3C618 (nudC domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103497082 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.6e-87
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQSRHVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 156
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 155

[Close]

BLAST of ClCG03G000770 vs. ExPASy TrEMBL
Match: A0A0A0LV57 (CS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G530660 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.0e-86
Identity = 152/155 (98.06%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNV+SKQFYCKIQSRHVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 156
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 155

[Close]

BLAST of ClCG03G000770 vs. ExPASy TrEMBL
Match: A0A6J1GA51 (nudC domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111452345 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.7e-86
Identity = 150/156 (96.15%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVN+YINLPPNVHSKQFYCKIQSRHVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNMYINLPPNVHSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNHELTCPVKTDSSFWTLED IMHITLQKRDKGQTWASPIQGQG+LDPYS+DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDGIMHITLQKRDKGQTWASPIQGQGRLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIH 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIH
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIH 156

[Close]

BLAST of ClCG03G000770 vs. ExPASy TrEMBL
Match: A0A6J1I2V0 (nudC domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111469416 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.2e-86
Identity = 151/157 (96.18%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIHL 158
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGI L
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRL 157

[Close]

BLAST of ClCG03G000770 vs. TAIR 10
Match: AT5G58740.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 305.4 bits (781), Expect = 3.0e-83
Identity = 137/155 (88.39%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60
           MAEKLAPEKRH F+HNGQKVFEWDQTLEEVN+YI LPPNVH K F+CKIQS+H+EVGIKG
Sbjct: 1   MAEKLAPEKRHDFIHNGQKVFEWDQTLEEVNMYITLPPNVHPKSFHCKIQSKHIEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNH+L+ PVKTD SFWTLEDDIMHITLQKR+KGQTWASPI GQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHDLSAPVKTDCSFWTLEDDIMHITLQKREKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 156
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGI
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGI 155

[Close]

BLAST of ClCG03G000770 vs. TAIR 10
Match: AT4G27890.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-14
Identity = 46/158 (29.11%), Postives = 75/158 (47.47%), Query Frame = 0


Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKGNPPYLNHELTCPVKTDSSFW 80
           + W Q L+EV I I +P    S+   C+I+   ++VG+KG    ++ E    VK D  FW
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195

Query: 81  TLEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPYS---------- 140
            +ED  ++ + L K+D+ + W   ++G+               G LDP +          
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMMFD 255

Query: 141 ----------SDLEQKRLMLQRFQEENPGFDFSQAQFS 143
                     SD  +K+ ML++F  +NPG DFS A+F+
Sbjct: 256 QRQKQMGLPRSDEIEKKDMLKKFMAQNPGMDFSNAKFN 293

[Close]

BLAST of ClCG03G000770 vs. TAIR 10
Match: AT5G53400.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 8.6e-14
Identity = 44/158 (27.85%), Postives = 75/158 (47.47%), Query Frame = 0


Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEVGIKGNPPYLNHELTCPVKTDSSFW 80
           + W Q L+EV + I +P    ++   C+I+   ++VG+KG  P ++ EL   VK D  +W
Sbjct: 147 YSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDDCYW 206

Query: 81  TLEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPY----------- 140
            +ED  ++ I L K D+ + W   ++G+               G LDP            
Sbjct: 207 NIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKLGDLDPETRSTVEKMMFD 266

Query: 141 ---------SSDLEQKRLMLQRFQEENPGFDFSQAQFS 143
                    +S+  QK+ +L++F  E+P  DFS A+F+
Sbjct: 267 QRQKQMGLPTSEELQKQEILKKFMSEHPEMDFSNAKFN 304

The following BLAST results are available for this feature:

BLAST of ClCG03G000770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894388.1	2.5e-87	97.45	nudC domain-containing protein 2 [Benincasa hispida]	[more]
XP_008457374.1	3.2e-87	99.35	PREDICTED: nudC domain-containing protein 2 [Cucumis melo] >KAA0031818.1 nudC do...	[more]
KAG6607306.1	1.2e-86	96.79	NudC domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_004151457.1	2.1e-86	98.06	nudC domain-containing protein 2 [Cucumis sativus] >KGN65805.1 hypothetical prot...	[more]
XP_023523271.1	2.1e-86	96.79	nudC domain-containing protein 2-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of ClCG03G000770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WVJ2	4.1e-21	40.00	NudC domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NUDCD2 PE=1 SV=1	[more]
Q9CQ48	4.1e-21	40.00	NudC domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nudcd2 PE=1 SV=1	[more]
Q5M823	9.2e-21	42.06	NudC domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Nudcd2 PE=2 SV...	[more]
Q9STN7	1.4e-13	29.11	Protein BOBBER 2 OS=Arabidopsis thaliana OX=3702 GN=BOB2 PE=2 SV=1	[more]
Q9LV09	1.2e-12	27.85	Protein BOBBER 1 OS=Arabidopsis thaliana OX=3702 GN=BOB1 PE=1 SV=1	[more]

BLAST of ClCG03G000770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMF6	1.6e-87	99.35	NudC domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3C618	1.6e-87	99.35	nudC domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103497082 PE=4 SV...	[more]
A0A0A0LV57	1.0e-86	98.06	CS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G530660 PE=4 SV=...	[more]
A0A6J1GA51	1.7e-86	96.15	nudC domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111452...	[more]
A0A6J1I2V0	2.2e-86	96.18	nudC domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC11146941...	[more]

BLAST of ClCG03G000770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58740.1	3.0e-83	88.39	HSP20-like chaperones superfamily protein	[more]
AT4G27890.1	1.0e-14	29.11	HSP20-like chaperones superfamily protein	[more]
AT5G53400.1	8.6e-14	27.85	HSP20-like chaperones superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007052	CS domain	PFAM	PF04969	CS	coord: 21..93 e-value: 2.5E-17 score: 63.7
IPR007052	CS domain	PROSITE	PS51203	CS	coord: 16..104 score: 15.932606
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 16..102 e-value: 5.7E-22 score: 80.1
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 9..114
None	No IPR available	GENE3D	1.20.5.740	Single helix bin	coord: 103..131 e-value: 1.2E-5 score: 27.0
None	No IPR available	PANTHER	PTHR12356:SF18	HSP20-LIKE CHAPERONES SUPERFAMILY PROTEIN	coord: 2..148
None	No IPR available	CDD	cd06467	p23_NUDC_like	coord: 21..104 e-value: 6.53692E-35 score: 116.108
IPR037898	NudC family	PANTHER	PTHR12356	NUCLEAR MOVEMENT PROTEIN NUDC	coord: 2..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G000770.2	ClCG03G000770.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0051082	unfolded protein binding