ClCG03G000670 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G000670
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Protein PSY3
Location	CG_Chr03: 659754 .. 660315 (+)
RNA-Seq Expression	ClCG03G000670
Synteny	ClCG03G000670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATCTTCACTTCACATCCCCCATTACCAATCTTTCAAACAAAGCCAAACGAACAACAACATGGATTATTTCAAAGCTCGCTTCGCTCTCTTCTTTTTGCTCTCGTTTGCCCTCGTTACTTCAGCTTGGATCATGCCCCATTCAGGTACACAAACCACCATCTTTTGTGTAACTTGTGTTTTGAATAGTATAGAAAAATAAAATCTAATATCATGTCAGATAAACAAGGCACAACGATTGCAATAAATGACTACACTGATCCGGGAGCTAATCCAAGACATGATCCAAACCAGCAGCCACCACCACCGCCATCACTTTCCAAGGTTAATGATGTCGATAGCCATGTTAGCACAAATCCCTGACAAAATCTGCTTGCCAGAGGAGGAGGATTTGTTGGCAAACAACGTCAGCAAGGAAGCTTAAACAAAGAATTAATGATGTGCATGGAACCAATAATAGTAGAATAAATATTATAGTATTGATGTAAATAATTCCATTTGTGTGGTGAGAATGGAATAATATATGTTATCAAATTGATGTAATGAATGCTGAAAATAGTAT

mRNA sequence

TTTATCTTCACTTCACATCCCCCATTACCAATCTTTCAAACAAAGCCAAACGAACAACAACATGGATTATTTCAAAGCTCGCTTCGCTCTCTTCTTTTTGCTCTCGTTTGCCCTCGTTACTTCAGCTTGGATCATGCCCCATTCAGATAAACAAGGCACAACGATTGCAATAAATGACTACACTGATCCGGGAGCTAATCCAAGACATGATCCAAACCAGCAGCCACCACCACCGCCATCACTTTCCAAGGTTAATGATGTCGATAGCCATGTTAGCACAAATCCCTGACAAAATCTGCTTGCCAGAGGAGGAGGATTTGTTGGCAAACAACGTCAGCAAGGAAGCTTAAACAAAGAATTAATGATGTGCATGGAACCAATAATAGTAGAATAAATATTATAGTATTGATGTAAATAATTCCATTTGTGTGGTGAGAATGGAATAATATATGTTATCAAATTGATGTAATGAATGCTGAAAATAGTAT

Coding sequence (CDS)

ATGGATTATTTCAAAGCTCGCTTCGCTCTCTTCTTTTTGCTCTCGTTTGCCCTCGTTACTTCAGCTTGGATCATGCCCCATTCAGATAAACAAGGCACAACGATTGCAATAAATGACTACACTGATCCGGGAGCTAATCCAAGACATGATCCAAACCAGCAGCCACCACCACCGCCATCACTTTCCAAGGTTAATGATGTCGATAGCCATGTTAGCACAAATCCCTGA

Protein sequence

MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPPSLSKVNDVDSHVSTNP

Homology

[Close]

BLAST of ClCG03G000670 vs. NCBI nr
Match: XP_038895781.1 (circumsporozoite protein-like [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 1  MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQP 56
          M+YFKAR   F LLSFAL+T A I PHS+ Q  TI INDY DPGANPRHDPNQ P
Sbjct: 1  MNYFKARLTFFLLLSFALITLARITPHSESQNNTITINDYADPGANPRHDPNQPP 55

[Close]

BLAST of ClCG03G000670 vs. NCBI nr
Match: KGN65816.1 (hypothetical protein Csa_023196 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 6.9e-12
Identity = 46/76 (60.53%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 1  MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPPS 60
          MDY KAR ALF LLSFAL TSA I+PHS+ Q  T  +NDY+DPGANPRHDP   PPP   
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDP--FPPPLEH 60

Query: 61 LSKVNDV-DSHVSTNP 76
            +VN V   H++ NP
Sbjct: 61 SFEVNAVRGRHITKNP 74

[Close]

BLAST of ClCG03G000670 vs. NCBI nr
Match: KAA0031838.1 (hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 6.9e-12
Identity = 47/77 (61.04%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 1  MDYFKAR-FALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPP 60
          M+YFKAR  ALF LLSFALVTSA IMPHS+ Q     INDY DPGANPRHDP    PPPP
Sbjct: 1  MNYFKARLIALFLLLSFALVTSARIMPHSENQEAAYMINDYPDPGANPRHDPF---PPPP 60

Query: 61 SLSKVNDVDSH-VSTNP 76
             +++ V  H +  NP
Sbjct: 61 QQFEISVVKDHDIKKNP 74

[Close]

BLAST of ClCG03G000670 vs. NCBI nr
Match: KAA0031836.1 (Protein PSY3 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 4.4e-11
Identity = 43/70 (61.43%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1  MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPPS 60
          MDY KAR ALF LLSF LVTSA I+PHS+ Q     INDY DPGANPRHDP    PPP  
Sbjct: 1  MDYSKARLALFLLLSFVLVTSARIIPHSENQEAAYMINDYPDPGANPRHDPF---PPPSQ 60

Query: 61 LSKVNDVDSH 71
            +V+ V  H
Sbjct: 61 QFEVSVVKGH 67

[Close]

BLAST of ClCG03G000670 vs. NCBI nr
Match: KAA0031837.1 (hypothetical protein E6C27_scaffold848G00870 [Cucumis melo var. makuwa] >TYJ97300.1 hypothetical protein E5676_scaffold194G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-10
Identity = 43/76 (56.58%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 1  MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPPS 60
          MDY K R AL  LLSFA+VT A I+PHS+ Q     INDY DPGANPRHDP    PPPP 
Sbjct: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPF---PPPPQ 60

Query: 61 LSKVNDVD-SHVSTNP 76
            +V+ V   H+  NP
Sbjct: 61 QFEVSVVKVQHIRKNP 73

[Close]

BLAST of ClCG03G000670 vs. ExPASy TrEMBL
Match: A0A5A7SMH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00880 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.3e-12
Identity = 47/77 (61.04%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 1  MDYFKAR-FALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPP 60
          M+YFKAR  ALF LLSFALVTSA IMPHS+ Q     INDY DPGANPRHDP    PPPP
Sbjct: 1  MNYFKARLIALFLLLSFALVTSARIMPHSENQEAAYMINDYPDPGANPRHDPF---PPPP 60

Query: 61 SLSKVNDVDSH-VSTNP 76
             +++ V  H +  NP
Sbjct: 61 QQFEISVVKDHDIKKNP 74

[Close]

BLAST of ClCG03G000670 vs. ExPASy TrEMBL
Match: A0A0A0M0T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.3e-12
Identity = 46/76 (60.53%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 1  MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPPS 60
          MDY KAR ALF LLSFAL TSA I+PHS+ Q  T  +NDY+DPGANPRHDP   PPP   
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDP--FPPPLEH 60

Query: 61 LSKVNDV-DSHVSTNP 76
            +VN V   H++ NP
Sbjct: 61 SFEVNAVRGRHITKNP 74

[Close]

BLAST of ClCG03G000670 vs. ExPASy TrEMBL
Match: A0A5A7SPC6 (Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.2e-11
Identity = 43/70 (61.43%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1  MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPPS 60
          MDY KAR ALF LLSF LVTSA I+PHS+ Q     INDY DPGANPRHDP    PPP  
Sbjct: 1  MDYSKARLALFLLLSFVLVTSARIIPHSENQEAAYMINDYPDPGANPRHDPF---PPPSQ 60

Query: 61 LSKVNDVDSH 71
            +V+ V  H
Sbjct: 61 QFEVSVVKGH 67

[Close]

BLAST of ClCG03G000670 vs. ExPASy TrEMBL
Match: A0A0A0LV67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.3e-11
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 1  MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPPS 60
          MDY KAR +L  LLSF LVTSA I+PHS+ Q     INDY DPGANPRH+P   PPPP  
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNP--FPPPPRH 60

Query: 61 LSKVNDV-DSHVSTNP 76
          L +++ V D  ++ NP
Sbjct: 61 LFEISVVKDGDITKNP 74

[Close]

BLAST of ClCG03G000670 vs. ExPASy TrEMBL
Match: A0A5D3BBU7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00970 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.2e-11
Identity = 43/76 (56.58%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 1  MDYFKARFALFFLLSFALVTSAWIMPHSDKQGTTIAINDYTDPGANPRHDPNQQPPPPPS 60
          MDY K R AL  LLSFA+VT A I+PHS+ Q     INDY DPGANPRHDP    PPPP 
Sbjct: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPF---PPPPQ 60

Query: 61 LSKVNDVD-SHVSTNP 76
            +V+ V   H+  NP
Sbjct: 61 QFEVSVVKVQHIRKNP 73

The following BLAST results are available for this feature:

BLAST of ClCG03G000670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895781.1	1.4e-12	70.91	circumsporozoite protein-like [Benincasa hispida]	[more]
KGN65816.1	6.9e-12	60.53	hypothetical protein Csa_023196 [Cucumis sativus]	[more]
KAA0031838.1	6.9e-12	61.04	hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa]	[more]
KAA0031836.1	4.4e-11	61.43	Protein PSY3 [Cucumis melo var. makuwa]	[more]
KAA0031837.1	1.7e-10	56.58	hypothetical protein E6C27_scaffold848G00870 [Cucumis melo var. makuwa] >TYJ9730...	[more]

BLAST of ClCG03G000670 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G000670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH7	3.3e-12	61.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0M0T8	3.3e-12	60.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1	[more]
A0A5A7SPC6	2.2e-11	61.43	Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 P...	[more]
A0A0A0LV67	6.3e-11	56.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1	[more]
A0A5D3BBU7	8.2e-11	56.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of ClCG03G000670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G000670.1	ClCG03G000670.1	mRNA