ClCG03G000140 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G000140
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	U2 small nuclear ribonucleoprotein B
Location	CG_Chr03: 182685 .. 186364 (-)
RNA-Seq Expression	ClCG03G000140
Synteny	ClCG03G000140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATCGGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTGACTCATTCTTAGCTTTTCGCTTAACCTTACTCTATTCCTTCCGTAAACGTCTTTTCTTCTGTTCGTTAAGTGTACAACTTAGTATAATTCAAGTGATCTCCGGCACATTTTATCTTTGTCATTTCGCCGTGGGCTCTCAAAATTCATGCTACTGTCGGTTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGTTATTTTGGCGAAGGTCGGTTTGTTTTTGTTACATTATTTGATATTTCTGATGATGCCCAACTATCATAGTTGAAATTTTGTTTTTAGGGTGAAGGAGCTGCTAGCTTGAAATTTTAGTTTGGATTTGGAGACGGCTACTTGCTTTACCCGTTCCCGTAGCATTTGGGATTTTGCTTACTATTTTGGTTGCTTAGTGTTCAGTTTTTGACAATATTACATCACGTGTGGAGGGGAGGGGGTTATTTGAACCTACGTCCTTTTAGTGTTCAGATTTCGATGGTATACTAATTTTCTCCCCCTTGGACAGAGTTGAAGAGATCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGCGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGGTTGGTCTTTAGCTGATCACATTTTCTGAACTTGCTTTTCATAGTCTTTTCATGGCCTTTCATCTATGGATTTTTCTAGTGCACTTTGAATTTTGTTGGGTAACTGTGGACAGTTCGCTTGTCAACGGGATTGGATCCTAATTGTGCTTCAATGAGTGTTATGTGGAGAGCGTCAAGTGAATATCTATACACAATCACACTCAATTATGCTCAATATTGTGCCAATTTAGCTGCTTCGCATGTCCGAAATAACGTCTTAATTTTGAGTAATTTCAATGGATAGAACTTTTAGGGGTAATAATTGTGTGAATACCAACATTTTTAAAGAATTGCAAATATAACAAAATTTATCAGTGATAGACTCTATCGTTGATAGACTGTTACCAACGATATGGGCTATCACTAATAGACTCTGAGAGTTGGATTTAAAATTTCCTATATCTGCAAATTTTTTTAAATTGTGTATATTTGCTTATACTTTGGACCTGATTTCTATATTTGGAACTGCCTCCTTAATTTTATTGGATATGTTGGTTTGTATATTGGTTATGTGCCTGATTTGAGCATTTTGAGATCTTTCTTTGTAACTCCAGTATATCGGACATCTCTTTTTTCAATGAATGTCATCTGTCATGAATTACAAAGCAGTGCTTAGAATGTTGTTGCCGTCAGATCTTCGGTCTTTATTGTAACTTGGACAAAGGGAGTTCATTTCTCCTTGTTCTAATGTGGGTATAATAAAGGGCCTAGAGGGAATAAGTTCAATCCATGATAGGGCACCTACTTGGGGTAATACCCTACGAGTTTTTTTTTGACATGTTGTAAGGTCAAATGGGTTATAGTCGAGATGTACACAAACTGACCCAAATACTTGCACATATCAAAAAAAGGAAAAAACAAACATGTCTGGAGATGTAACCATGATTCTGTTAGGAAGAAACAAGTTTACTATTATTTTTTTCCCTTTTAAATTTCACTCTTTTTTTTTTTGTTTCATCTTGGAACTTTGTGTACCATCTTCATCATACAACTTATTCTGATGTTTAATATGATGATGCCTTTCTGTTGACCATCTCAAAAATATAAAGTTGACTTTTGTTGTTTCTTTTGCAGAGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGGTGATTGTAACTGTATATTATCTTTAAGTTAGTAGATCGACAGTATATTTTTACTATGGTTTTTTGAAATGGTTCACATAACCTCTCATTTTCTTATTGCATTGCTTTTGAAATATCTCAAGGGTTTTAAACTGGTTTATGTTCCTGATTATCTTATTATTTGCTTATCCAGCTGAAAAAAAGCGACGTGCTGAAGAAGCACACCAATCTGCGATGCCCAACGGAACAACTGCTGAGAATGGAGGTTCAAATGTAAGTTTATCTCCACCCTTATTTTATTTTTTGTGATGTAAAATGTTTGTTTTCCTTCTTCATATGAGCTGTATCGTATTAATTGTTTTCACGGGAAGTGGTCCCAAACATAAACTGTGTGAGTCTTGTTTGGATGGCGTGGTTCTCTGGTTAATTGTTTGTTTCTTCACATCTGTTAGAAAGTCATTGATGTCTATTCCAATTAGATTTCACCTTAGTGCCCCTTAGATCAGGCAATGTTAACCAACACTTTTCCATAATTATTTTTGCTAAGAAAGCCTCTTCGTTGTGTGTCATTTTTGCAGGCCACATTCCGTCATGCAAATCCAAGTGCTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGACGATGTTCAATCCTCCATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAACTCGAGCTTTGTTCTACTGTTATCTTTTTGGAATGTGCAGCAGGTTTATGTTAACGTCACCGCACATAAATGAGTCGTGAGTTTTTATGTAAAGTTCAGATATTCTTCCCCTCCTTCCAACGCCATAAAAGAGAAAGAAATAAGAAAACATAGGGAGGTAGCCCACTGGTTCGGAAGAGGAGGATATCACACCAAGGGACTCGATGAGTTTTGCCGGCTGTGCTAATTCCAGTTTCCAGGGGTAGCAAGAGAAAGTTTTACGTTAGGTTGTCAAAAAGGAAACAGAAAGAACTAATCAAAGACTTTTTTTTTTTGTTTTTTTCTTTAAATGTGTTCATGTACTTGTTGTAGTAGTGGATAACTAGCTTTTGAAAAGAGAACGGGGAGCTGAAATTTCGGAGACAATGTTGATTAGACTTTTGCATGAATATTTTCGTCCTTGAACAATGAAGTGTTGATAATCATTTCTGTCA

mRNA sequence

ATGTTATCGGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTGACTCATTCTTAGCTTTTCGCTTAACCTTACTCTATTCCTTCCGTAAACGTCTTTTCTTCTGTTCGATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGCGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGAGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAAAAAGCGACGTGCTGAAGAAGCACACCAATCTGCGATGCCCAACGGAACAACTGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGTGCTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGACGATGTTCAATCCTCCATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAACTCGAGCTTTGTTCTACTGTTATCTTTTTGGAATGTGCAGCAGGTTTATGTTAACGTCACCGCACATAAATGAGTCGTGAGTTTTTATGTAAAGTTCAGATATTCTTCCCCTCCTTCCAACGCCATAAAAGAGAAAGAAATAAGAAAACATAGGGAGGTAGCCCACTGGTTCGGAAGAGGAGGATATCACACCAAGGGACTCGATGAGTTTTGCCGGCTGTGCTAATTCCAGTTTCCAGGGGTAGCAAGAGAAAGTTTTACGTTAGGTTGTCAAAAAGGAAACAGAAAGAACTAATCAAAGACTTTTTTTTTTTGTTTTTTTCTTTAAATGTGTTCATGTACTTGTTGTAGTAGTGGATAACTAGCTTTTGAAAAGAGAACGGGGAGCTGAAATTTCGGAGACAATGTTGATTAGACTTTTGCATGAATATTTTCGTCCTTGAACAATGAAGTGTTGATAATCATTTCTGTCA

Coding sequence (CDS)

ATGTTATCGGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTGACTCATTCTTAGCTTTTCGCTTAACCTTACTCTATTCCTTCCGTAAACGTCTTTTCTTCTGTTCGATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGCGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGAGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAAAAAGCGACGTGCTGAAGAAGCACACCAATCTGCGATGCCCAACGGAACAACTGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGTGCTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGACGATGTTCAATCCTCCATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Protein sequence

MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

Homology

[Close]

BLAST of ClCG03G000140 vs. NCBI nr
Match: XP_008457301.1 (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo] >KAA0059982.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo var. makuwa] >TYJ97241.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 405.2 bits (1040), Expect = 3.9e-109
Identity = 218/239 (91.21%), Postives = 220/239 (92.05%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           MLSGDIPPNQTIYIKNLNEKVKKE    L   L  L+S   R     ILDVVALKTPRLR
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEE---LKRSLYALFSQYGR-----ILDVVALKTPRLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADG+FVPREKKKKQEE
Sbjct: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMM 180
           KAEKKRRAEEAHQSAMPNGTT ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMM
Sbjct: 121 KAEKKRRAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMM 180

Query: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of ClCG03G000140 vs. NCBI nr
Match: XP_004137370.1 (U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus] >KGN63915.1 hypothetical protein Csa_013411 [Cucumis sativus])

HSP 1 Score: 404.4 bits (1038), Expect = 6.6e-109
Identity = 217/239 (90.79%), Postives = 219/239 (91.63%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           MLSGDIPPNQTIYIKNLNEKVKKE    L   L  L+S   R     ILDVVALKTPRLR
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEE---LKRSLYALFSQYGR-----ILDVVALKTPRLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDC+AKADGSFVPREKKKKQEE
Sbjct: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMM 180
           KAEKKRRAEE HQSAMPNGTT ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMM
Sbjct: 121 KAEKKRRAEETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMM 180

Query: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of ClCG03G000140 vs. NCBI nr
Match: XP_038893561.1 (U2 small nuclear ribonucleoprotein B'' 2 [Benincasa hispida])

HSP 1 Score: 400.2 bits (1027), Expect = 1.2e-107
Identity = 218/239 (91.21%), Postives = 220/239 (92.05%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           MLSGDIPPNQTIYIKNLNEKVKKE    L   L  L+S   R     ILDVVALKTPRLR
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEE---LKRSLYALFSQYGR-----ILDVVALKTPRLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE
Sbjct: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMM 180
           KAEKKRRAEEAHQSAMPNGTT  NGGSNATFRHANP+AAEATPNNILFIENLPHETSSMM
Sbjct: 121 KAEKKRRAEEAHQSAMPNGTTG-NGGSNATFRHANPNAAEATPNNILFIENLPHETSSMM 180

Query: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 230

[Close]

BLAST of ClCG03G000140 vs. NCBI nr
Match: XP_022949507.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima] >KAG6607350.1 U2 small nuclear ribonucleoprotein B'', partial [Cucurbita argyrosperma subsp. sororia] >KAG7037025.1 U2 small nuclear ribonucleoprotein B'' [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 397.9 bits (1021), Expect = 6.2e-107
Identity = 214/239 (89.54%), Postives = 217/239 (90.79%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           ML GDIPPNQTIYIKNLNEKVKKE    L   L  L+S   R     ILDVVALKTPRLR
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEE---LKRSLYALFSQYGR-----ILDVVALKTPRLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE
Sbjct: 61  GQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMM 180
           KAE+KRR EE HQSAMPNG TAENGGSNATFRHANPSA EATPNNILFIENLPHETSSMM
Sbjct: 121 KAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMM 180

Query: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of ClCG03G000140 vs. NCBI nr
Match: XP_023525708.1 (U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525709.1 U2 small nuclear ribonucleoprotein B'' 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.7 bits (1018), Expect = 1.4e-106
Identity = 213/239 (89.12%), Postives = 217/239 (90.79%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           ML GDIPPNQTIYIKNLNEKVKKE    L   L  L+S   R     ILDVVALKTPRLR
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEE---LKRSLYALFSQYGR-----ILDVVALKTPRLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE
Sbjct: 61  GQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMM 180
           KAE+KRR +E HQSAMPNG TAENGGSNATFRHANPSA EATPNNILFIENLPHETSSMM
Sbjct: 121 KAERKRRTDETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMM 180

Query: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of ClCG03G000140 vs. ExPASy Swiss-Prot
Match: Q8H1S6 (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.4e-82
Identity = 168/240 (70.00%), Postives = 194/240 (80.83%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           ML+ DIPPNQ+IYIK++NEK+KKE    L   L  L+S      F  +LDVVALKTP+LR
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEE---LKRSLYCLFS-----QFGRLLDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV F+EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V KA+GSFVP+EKK KQEE
Sbjct: 61  GQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHETSSM 180
           K E+KR AEE  Q +MPNG T +NG     F+   PS  +   PNNILFI NLP ET+SM
Sbjct: 121 KVERKRHAEETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSM 180

Query: 181 MLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           MLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 MLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of ClCG03G000140 vs. ExPASy Swiss-Prot
Match: O22922 (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 8.2e-78
Identity = 160/243 (65.84%), Postives = 193/243 (79.42%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           ML+ DIPPNQ+IYI+NLNE++KKE    L   L  L+S      F  ILDVVALKTP+LR
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEE---LKRSLYCLFS-----QFGRILDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV FSEVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+G+FVP++KK+KQEE
Sbjct: 61  GQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEE 120

Query: 121 KAEKKRRAEEAHQSA---MPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHET 180
           K E+KR   +   +A     NG +A NG    +F+   PS  E   PNNILFI+NLPHET
Sbjct: 121 KVERKREDSQRPNTANGPSANGPSANNGVPAPSFQ---PSGQETMPPNNILFIQNLPHET 180

Query: 181 SSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISF 240
           +SMMLQ+LF+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISF
Sbjct: 181 TSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISF 232

[Close]

BLAST of ClCG03G000140 vs. ExPASy Swiss-Prot
Match: B8AM21 (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.6e-76
Identity = 162/241 (67.22%), Postives = 182/241 (75.52%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           MLSGDIPPNQT+Y++NLNEKVKKE      + L   Y          ILDVVALKTP+LR
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYG--------RILDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV FSE+TAA+NA R +Q F FY K MR+QYAKTKSDC+A  DGS  P+EK+KKQEE
Sbjct: 61  GQAWVVFSEITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEE 120

Query: 121 K-AEKKRRAEEAHQSAMPNGTTAENG-GSNATFRHANPSAAEATPNNILFIENLPHETSS 180
           K AEKKRRAEEA QS  PN     NG G  A+          A PNNILFI+NLP ET+S
Sbjct: 121 KAAEKKRRAEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTS 180

Query: 181 MMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAK 240
           MMLQ+LFQQYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AK
Sbjct: 181 MMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAK 232

[Close]

BLAST of ClCG03G000140 vs. ExPASy Swiss-Prot
Match: Q10MR0 (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 5.9e-76
Identity = 161/241 (66.80%), Postives = 182/241 (75.52%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           MLSGDIPPNQT+Y++NLNEKVKKE      + L   Y          ILDVVALKTP+LR
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYG--------RILDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV FSE+TAA+NA R +Q F FY K MR+QYAKT+SDC+A  DGS  P+EK+KKQEE
Sbjct: 61  GQAWVVFSEITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEE 120

Query: 121 K-AEKKRRAEEAHQSAMPNGTTAENG-GSNATFRHANPSAAEATPNNILFIENLPHETSS 180
           K AEKKRRAEEA QS  PN     NG G  A+          A PNNILFI+NLP ET+S
Sbjct: 121 KAAEKKRRAEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTS 180

Query: 181 MMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAK 240
           MMLQ+LFQQYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AK
Sbjct: 181 MMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAK 232

[Close]

BLAST of ClCG03G000140 vs. ExPASy Swiss-Prot
Match: A2Y0J7 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 8.0e-57
Identity = 130/242 (53.72%), Postives = 165/242 (68.18%), Query Frame = 0


Query: 7   PPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLRGQAWVA 66
           PPN TIYI NLNEK+K E    L   L  ++S      F  ILDV+A KT + +GQAWV 
Sbjct: 20  PPNVTIYINNLNEKIKLEE---LKKSLRAVFS-----QFGKILDVLAFKTLKHKGQAWVV 79

Query: 67  FSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKR 126
           F +V +A+ A++ MQ+FPF+ KPMRIQYAKTKSD +AKADG+FVPRE++K+ +EK EKK+
Sbjct: 80  FEDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQ 139

Query: 127 RAEEAHQ-SAMPNGTTAENGGSNATFRHANPSAAE--------ATPNNILFIENLPHETS 186
           + E+ H  S +  G  A  G   A      P A            PNNILF++NLPHET+
Sbjct: 140 KREQHHDVSQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETT 199

Query: 187 SMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFA 240
            MMLQ+LF QYPGF+EVRM+EAKPGIAFVE+ D+ Q++ AM  LQGFKI   + M IS+A
Sbjct: 200 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYA 253

[Close]

BLAST of ClCG03G000140 vs. ExPASy TrEMBL
Match: A0A5D3BF51 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00310 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.9e-109
Identity = 218/239 (91.21%), Postives = 220/239 (92.05%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           MLSGDIPPNQTIYIKNLNEKVKKE    L   L  L+S   R     ILDVVALKTPRLR
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEE---LKRSLYALFSQYGR-----ILDVVALKTPRLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADG+FVPREKKKKQEE
Sbjct: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMM 180
           KAEKKRRAEEAHQSAMPNGTT ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMM
Sbjct: 121 KAEKKRRAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMM 180

Query: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of ClCG03G000140 vs. ExPASy TrEMBL
Match: A0A1S3C564 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC103497024 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.9e-109
Identity = 218/239 (91.21%), Postives = 220/239 (92.05%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           MLSGDIPPNQTIYIKNLNEKVKKE    L   L  L+S   R     ILDVVALKTPRLR
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEE---LKRSLYALFSQYGR-----ILDVVALKTPRLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADG+FVPREKKKKQEE
Sbjct: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMM 180
           KAEKKRRAEEAHQSAMPNGTT ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMM
Sbjct: 121 KAEKKRRAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMM 180

Query: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of ClCG03G000140 vs. ExPASy TrEMBL
Match: A0A0A0LPT7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.2e-109
Identity = 217/239 (90.79%), Postives = 219/239 (91.63%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           MLSGDIPPNQTIYIKNLNEKVKKE    L   L  L+S   R     ILDVVALKTPRLR
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEE---LKRSLYALFSQYGR-----ILDVVALKTPRLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDC+AKADGSFVPREKKKKQEE
Sbjct: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMM 180
           KAEKKRRAEE HQSAMPNGTT ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMM
Sbjct: 121 KAEKKRRAEETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMM 180

Query: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of ClCG03G000140 vs. ExPASy TrEMBL
Match: A0A6J1KA04 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita maxima OX=3661 GN=LOC111493013 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 3.0e-107
Identity = 214/239 (89.54%), Postives = 217/239 (90.79%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           ML GDIPPNQTIYIKNLNEKVKKE    L   L  L+S   R     ILDVVALKTPRLR
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEE---LKRSLYALFSQYGR-----ILDVVALKTPRLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE
Sbjct: 61  GQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMM 180
           KAE+KRR EE HQSAMPNG TAENGGSNATFRHANPSA EATPNNILFIENLPHETSSMM
Sbjct: 121 KAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMM 180

Query: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of ClCG03G000140 vs. ExPASy TrEMBL
Match: A0A6J1GC84 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita moschata OX=3662 GN=LOC111452834 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 3.0e-107
Identity = 214/239 (89.54%), Postives = 217/239 (90.79%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           ML GDIPPNQTIYIKNLNEKVKKE    L   L  L+S   R     ILDVVALKTPRLR
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEE---LKRSLYALFSQYGR-----ILDVVALKTPRLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE
Sbjct: 61  GQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMM 180
           KAE+KRR EE HQSAMPNG TAENGGSNATFRHANPSA EATPNNILFIENLPHETSSMM
Sbjct: 121 KAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMM 180

Query: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of ClCG03G000140 vs. TAIR 10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 307.4 bits (786), Expect = 1.0e-83
Identity = 168/240 (70.00%), Postives = 194/240 (80.83%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           ML+ DIPPNQ+IYIK++NEK+KKE    L   L  L+S      F  +LDVVALKTP+LR
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEE---LKRSLYCLFS-----QFGRLLDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV F+EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V KA+GSFVP+EKK KQEE
Sbjct: 61  GQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHETSSM 180
           K E+KR AEE  Q +MPNG T +NG     F+   PS  +   PNNILFI NLP ET+SM
Sbjct: 121 KVERKRHAEETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSM 180

Query: 181 MLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           MLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 MLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of ClCG03G000140 vs. TAIR 10
Match: AT1G06960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 303.5 bits (776), Expect = 1.5e-82
Identity = 167/240 (69.58%), Postives = 192/240 (80.00%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           ML+ DIPPNQ+IYIK++NEK+KKE    L   L  L+S      F  +LDVVALKTP+LR
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEE---LKRSLYCLFS-----QFGRLLDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV F+EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V KA+GSFVP+EKK KQEE
Sbjct: 61  GQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHETSSM 180
           K E+KR AEE  Q +MPNG T +NG          PS  +   PNNILFI NLP ET+SM
Sbjct: 121 KVERKRHAEETQQPSMPNGATTQNGMPPP----FQPSGQDTMPPNNILFIHNLPIETNSM 180

Query: 181 MLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           MLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 MLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228

[Close]

BLAST of ClCG03G000140 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 291.6 bits (745), Expect = 5.8e-79
Identity = 160/243 (65.84%), Postives = 193/243 (79.42%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           ML+ DIPPNQ+IYI+NLNE++KKE    L   L  L+S      F  ILDVVALKTP+LR
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEE---LKRSLYCLFS-----QFGRILDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV FSEVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+G+FVP++KK+KQEE
Sbjct: 61  GQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEE 120

Query: 121 KAEKKRRAEEAHQSA---MPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHET 180
           K E+KR   +   +A     NG +A NG    +F+   PS  E   PNNILFI+NLPHET
Sbjct: 121 KVERKREDSQRPNTANGPSANGPSANNGVPAPSFQ---PSGQETMPPNNILFIQNLPHET 180

Query: 181 SSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISF 240
           +SMMLQ+LF+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISF
Sbjct: 181 TSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISF 232

[Close]

BLAST of ClCG03G000140 vs. TAIR 10
Match: AT1G06960.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 277.7 bits (709), Expect = 8.7e-75
Identity = 148/201 (73.63%), Postives = 168/201 (83.58%), Query Frame = 0


Query: 40  RKRLFFCSILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKS 99
           R R  F  +LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFY+KPMRIQYAK+KS
Sbjct: 3   RSRKKFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKS 62

Query: 100 DCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAA 159
           D V KA+GSFVP+EKK KQEEK E+KR AEE  Q +MPNG T +NG     F+   PS  
Sbjct: 63  DYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQQPSMPNGATTQNGMPVPPFQ---PSGQ 122

Query: 160 EA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAM 219
           +   PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAM
Sbjct: 123 DTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAM 182

Query: 220 QALQGFKIDPQHPMAISFAKK 240
           QALQGFKI PQ+PM +SFAKK
Sbjct: 183 QALQGFKITPQNPMVVSFAKK 200

[Close]

BLAST of ClCG03G000140 vs. TAIR 10
Match: AT2G47580.1 (spliceosomal protein U1A )

HSP 1 Score: 218.0 bits (554), Expect = 8.2e-57
Identity = 131/247 (53.04%), Postives = 166/247 (67.21%), Query Frame = 0


Query: 5   DIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLRGQAW 64
           ++ PNQTIYI NLNEKVK +    L   L  ++S      F  IL+++A KT + +GQAW
Sbjct: 13  EVSPNQTIYINNLNEKVKLDE---LKKSLNAVFS-----QFGKILEILAFKTFKHKGQAW 72

Query: 65  VAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEK 124
           V F    +AS A+ +M NFPFY+K MRIQYAKTKSD VAKADG+FVPREK+K+ EEK   
Sbjct: 73  VVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGG 132

Query: 125 KRRAEEAH---------QSAMPNGTTAENGGSNATF---RHANPSAAEATPNNILFIENL 184
           K++ ++ H          SA P    A    S   +      N   A A PNNILF++NL
Sbjct: 133 KKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNL 192

Query: 185 PHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM 240
           PHET+ M+LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M
Sbjct: 193 PHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQM 250

The following BLAST results are available for this feature:

BLAST of ClCG03G000140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457301.1	3.9e-109	91.21	PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo] >KAA0059...	[more]
XP_004137370.1	6.6e-109	90.79	U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus] >KGN63915.1 hypotheti...	[more]
XP_038893561.1	1.2e-107	91.21	U2 small nuclear ribonucleoprotein B'' 2 [Benincasa hispida]	[more]
XP_022949507.1	6.2e-107	89.54	U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346...	[more]
XP_023525708.1	1.4e-106	89.12	U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. ...	[more]

BLAST of ClCG03G000140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H1S6	1.4e-82	70.00	U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
O22922	8.2e-78	65.84	U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ...	[more]
B8AM21	2.6e-76	67.22	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN...	[more]
Q10MR0	5.9e-76	66.80	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
A2Y0J7	8.0e-57	53.72	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O...	[more]

BLAST of ClCG03G000140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BF51	1.9e-109	91.21	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C564	1.9e-109	91.21	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LPT7	3.2e-109	90.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1	[more]
A0A6J1KA04	3.0e-107	89.54	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1GC84	3.0e-107	89.54	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of ClCG03G000140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06960.1	1.0e-83	70.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.2	1.5e-82	69.58	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G30260.1	5.8e-79	65.84	U2 small nuclear ribonucleoprotein B	[more]
AT1G06960.3	8.7e-75	73.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G47580.1	8.2e-57	53.04	spliceosomal protein U1A	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..132
None	No IPR available	PANTHER	PTHR10501:SF13	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 4..239
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 4..239
None	No IPR available	CDD	cd12247	RRM2_U1A_like	coord: 163..235 e-value: 8.2055E-38 score: 124.989
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 11..96 e-value: 9.11036E-35 score: 117.244
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 11..93 e-value: 0.0014 score: 27.9 coord: 166..235 e-value: 3.6E-10 score: 49.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 167..227 e-value: 3.0E-12 score: 46.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 10..97 score: 9.79736
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 165..239 score: 13.293717
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 154..239 e-value: 4.6E-22 score: 79.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..117 e-value: 4.2E-20 score: 73.8
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..227

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G000140.1	ClCG03G000140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005686	U2 snRNP
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding